Wall clock time and date at job start Tue Mar 31 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99955 * 2 1 4 4 H 1.07998 * 120.00241 * 204.89300 * 3 2 1 5 5 C 1.38813 * 119.99655 * 24.90659 * 3 2 1 6 6 N 1.31617 * 120.00293 * 5.56523 * 5 3 2 7 7 Si 1.86803 * 119.99882 * 185.56973 * 5 3 2 8 8 H 1.48508 * 109.47038 * 59.99483 * 7 5 3 9 9 H 1.48501 * 109.47259 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46807 * 300.00113 * 7 5 3 11 11 C 1.46500 * 120.00111 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47017 * 270.00034 * 11 2 1 13 13 O 1.42894 * 109.47446 * 64.99491 * 12 11 2 14 14 C 1.42907 * 114.00111 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47258 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47177 * 64.99996 * 15 14 13 17 17 C 1.46502 * 120.00131 * 89.99848 * 16 15 14 18 18 C 1.34774 * 120.00134 * 270.00264 * 16 15 14 19 19 O 1.21275 * 120.00248 * 3.22833 * 18 16 15 20 20 C 1.50708 * 120.00196 * 183.23158 * 18 16 15 21 21 C 1.52995 * 109.46863 * 290.32177 * 20 18 16 22 22 C 1.52999 * 109.47062 * 179.97438 * 21 20 18 23 23 C 1.52996 * 109.47185 * 359.97438 * 22 21 20 24 24 C 1.53001 * 109.46900 * 60.00247 * 23 22 21 25 25 C 1.52990 * 109.47343 * 170.31750 * 20 18 16 26 26 C 1.53003 * 109.47317 * 300.00237 * 23 22 21 27 27 C 1.52998 * 109.46824 * 50.31885 * 20 18 16 28 28 H 1.09000 * 109.46606 * 275.01728 * 1 2 3 29 29 H 1.08993 * 109.47040 * 35.01249 * 1 2 3 30 30 H 1.08998 * 109.47317 * 155.02078 * 1 2 3 31 31 H 0.96999 * 120.00267 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47280 * 149.99527 * 11 2 1 33 33 H 1.09006 * 109.47035 * 29.99689 * 11 2 1 34 34 H 1.09002 * 109.46631 * 304.99277 * 12 11 2 35 35 H 1.09001 * 109.47005 * 185.00111 * 12 11 2 36 36 H 1.09000 * 109.46554 * 60.00023 * 14 13 12 37 37 H 1.08999 * 109.47028 * 300.00517 * 14 13 12 38 38 H 1.08995 * 109.47080 * 185.00186 * 15 14 13 39 39 H 1.09000 * 109.47063 * 305.00301 * 15 14 13 40 40 H 1.09002 * 109.46698 * 84.19327 * 17 16 15 41 41 H 1.08992 * 109.47212 * 204.19381 * 17 16 15 42 42 H 1.09000 * 109.46858 * 324.19811 * 17 16 15 43 43 H 1.09007 * 109.47136 * 299.99855 * 21 20 18 44 44 H 1.08996 * 109.47663 * 59.99687 * 21 20 18 45 45 H 1.09006 * 109.47199 * 239.99526 * 22 21 20 46 46 H 1.09003 * 109.47137 * 119.99725 * 22 21 20 47 47 H 1.08996 * 109.47473 * 180.02562 * 23 22 21 48 48 H 1.09003 * 109.46915 * 180.02562 * 24 23 22 49 49 H 1.09003 * 109.47215 * 59.99867 * 24 23 22 50 50 H 1.09000 * 109.47517 * 300.00521 * 25 20 18 51 51 H 1.09010 * 109.47226 * 59.99841 * 25 20 18 52 52 H 1.08995 * 109.47146 * 179.97438 * 26 23 22 53 53 H 1.08994 * 109.47283 * 299.99916 * 26 23 22 54 54 H 1.09005 * 109.46981 * 299.99642 * 27 20 18 55 55 H 1.08998 * 109.47481 * 60.00100 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1545 1.2294 -0.3937 5 6 1.5524 2.3321 0.5063 6 7 0.3728 2.2586 1.0854 7 14 2.4228 3.9790 0.3655 8 1 2.6523 4.2967 -1.0669 9 1 1.5809 5.0378 0.9782 10 1 3.7269 3.9116 1.0727 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 8 1.2062 -1.9943 2.0806 14 6 1.3326 -2.4189 3.4392 15 6 -0.0563 -2.6933 4.0192 16 7 -0.6649 -3.8245 3.3148 17 6 -0.4593 -5.1895 3.8055 18 6 -1.4139 -3.6094 2.2152 19 8 -1.5362 -2.4861 1.7748 20 6 -2.0998 -4.7650 1.5327 21 6 -1.0520 -5.6568 0.8638 22 6 -1.7481 -6.8303 0.1715 23 6 -3.2600 -6.7210 0.3795 24 6 -3.7631 -5.4053 -0.2177 25 6 -3.0662 -4.2311 0.4737 26 6 -3.5725 -6.7540 1.8769 27 6 -2.8773 -5.5800 2.5681 28 1 -0.3632 0.0899 1.0238 29 1 -0.3633 0.8416 -0.5896 30 1 -0.3634 -0.9315 -0.4340 31 1 -0.0444 3.0595 1.4396 32 1 3.1499 -1.1382 -0.5144 33 1 1.6084 -2.0282 -0.5147 34 1 2.9644 -0.9139 1.9810 35 1 3.0733 -2.6070 1.4426 36 1 1.8214 -1.6368 4.0202 37 1 1.9300 -3.3297 3.4812 38 1 0.0331 -2.9309 5.0792 39 1 -0.6824 -1.8095 3.8965 40 1 -1.1843 -5.4065 4.5900 41 1 -0.5902 -5.8943 2.9845 42 1 0.5497 -5.2829 4.2072 43 1 -0.4980 -5.0761 0.1262 44 1 -0.3634 -6.0372 1.6183 45 1 -1.3899 -7.7677 0.5972 46 1 -1.5252 -6.8070 -0.8952 47 1 -3.7559 -7.5572 -0.1133 48 1 -4.8401 -5.3273 -0.0692 49 1 -3.5404 -5.3818 -1.2845 50 1 -3.8127 -3.5956 0.9503 51 1 -2.5123 -3.6503 -0.2640 52 1 -4.6495 -6.6757 2.0250 53 1 -3.2141 -7.6913 2.3023 54 1 -2.1886 -5.9605 3.3226 55 1 -3.6237 -4.9447 3.0448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316768140.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:24 Heat of formation + Delta-G solvation = -66.344959 kcal Electronic energy + Delta-G solvation = -32711.692168 eV Core-core repulsion = 28748.997549 eV Total energy + Delta-G solvation = -3962.694619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.32363 -39.74401 -38.75125 -37.22513 -36.43940 -33.60570 -32.98125 -31.85201 -31.79292 -30.80496 -29.42425 -27.83158 -27.65299 -24.95239 -24.54591 -23.61909 -23.48711 -22.71987 -22.16186 -20.35874 -18.78966 -18.38530 -17.60379 -17.37629 -17.23831 -17.00608 -16.77175 -16.63244 -16.25577 -16.02019 -15.49726 -15.19910 -15.06120 -14.85047 -14.25986 -14.01853 -13.78062 -13.72890 -13.68469 -13.53398 -13.14012 -13.01258 -12.94471 -12.89791 -12.82578 -12.80150 -12.69995 -12.61937 -12.52473 -12.47379 -12.28403 -12.12570 -12.05645 -11.80667 -11.67829 -11.33822 -11.29335 -10.74897 -10.62830 -10.53273 -10.34813 -10.19205 -9.49087 -8.72010 -7.76737 -5.29853 1.42546 1.47141 1.53612 1.88655 2.16203 2.50879 2.99854 3.34401 3.47007 3.61150 3.63226 3.74524 4.10254 4.14090 4.16903 4.18548 4.27759 4.33857 4.39571 4.41603 4.43003 4.43657 4.47492 4.48425 4.52356 4.53373 4.55596 4.59218 4.66034 4.70013 4.74318 4.90267 4.91675 4.96120 4.98383 5.12875 5.13935 5.17568 5.18454 5.27895 5.34942 5.37796 5.41192 5.42175 5.46552 5.50955 5.51854 5.63371 5.69986 5.92667 6.34629 6.55490 6.62903 7.17511 7.48902 7.89671 8.39867 9.25776 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.003261 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.933221 B = 8584.777871 C = 9122.577863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.222 3.778 2 N -0.612 5.612 3 C -0.270 4.270 4 H 0.075 0.925 5 C -0.056 4.056 6 N -0.938 5.938 7 Si 0.975 3.025 8 H -0.276 1.276 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.378 6.378 14 C 0.042 3.958 15 C 0.124 3.876 16 N -0.613 5.613 17 C 0.052 3.948 18 C 0.505 3.495 19 O -0.561 6.561 20 C -0.060 4.060 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.094 4.094 26 C -0.105 4.105 27 C -0.125 4.125 28 H 0.001 0.999 29 H 0.000 1.000 30 H -0.003 1.003 31 H 0.244 0.756 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.042 0.958 51 H 0.033 0.967 52 H 0.066 0.934 53 H 0.091 0.909 54 H 0.108 0.892 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -27.500 6.592 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.335 5.335 3 C -0.400 4.400 4 H 0.093 0.907 5 C -0.251 4.251 6 N -0.584 5.584 7 Si 0.802 3.198 8 H -0.201 1.201 9 H -0.222 1.222 10 H -0.197 1.197 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.297 6.297 14 C -0.036 4.036 15 C 0.001 3.999 16 N -0.347 5.347 17 C -0.089 4.089 18 C 0.293 3.707 19 O -0.437 6.437 20 C -0.064 4.064 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.103 4.103 24 C -0.148 4.148 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.162 4.162 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.085 0.915 53 H 0.109 0.891 54 H 0.126 0.874 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.785 -26.761 6.321 27.911 hybrid contribution 0.514 2.062 0.089 2.127 sum -4.270 -24.699 6.410 25.872 Atomic orbital electron populations 1.20032 0.82701 0.92779 0.96802 1.44035 1.01906 1.01498 1.86083 1.19591 0.99587 0.87237 1.33561 0.90711 1.26005 0.98119 1.02381 0.98561 1.70356 1.17530 1.27656 1.42872 0.85243 0.77692 0.78969 0.77886 1.20142 1.22208 1.19750 1.21010 0.96174 0.87063 0.93246 1.23156 0.86028 0.97170 0.96328 1.88178 1.29333 1.87375 1.24804 1.22990 0.98126 0.98214 0.84304 1.21410 0.92186 0.89670 0.96626 1.47772 1.50611 1.08249 1.28022 1.22704 1.03135 0.81488 1.01534 1.21284 0.78663 0.90454 0.80278 1.90833 1.62127 1.26871 1.63880 1.20588 0.96249 0.93181 0.96355 1.21746 0.96625 0.96505 0.99850 1.21550 0.94714 0.97636 1.00439 1.21092 0.95826 0.96866 0.96542 1.21589 0.99810 0.94028 0.99325 1.21291 0.97267 0.97737 0.96966 1.21532 1.00458 0.98045 0.94206 1.22104 0.99747 0.97058 0.97285 0.98101 0.98092 0.98500 0.94693 0.91001 0.93928 0.96234 0.92344 0.94170 0.91641 0.85498 0.93694 0.90195 0.87934 0.89923 0.94464 0.88833 0.88972 0.92128 0.88923 0.91225 0.92081 0.93945 0.94833 0.91535 0.89080 0.87405 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.22 13.69 8.60 127.77 1.10 14.79 16 2 N -0.61 -35.44 2.89 -726.93 -2.10 -37.54 16 3 C -0.27 -16.25 9.67 84.03 0.81 -15.43 16 4 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 5 C -0.06 -3.42 5.24 84.86 0.44 -2.98 16 6 N -0.94 -61.82 10.45 21.65 0.23 -61.60 16 7 Si 0.97 48.30 29.56 68.60 2.03 50.33 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.15 7.07 6.11 86.38 0.53 7.59 16 12 C 0.05 2.21 6.28 71.98 0.45 2.67 16 13 O -0.38 -16.80 8.55 -138.10 -1.18 -17.98 16 14 C 0.04 1.37 6.28 71.98 0.45 1.83 16 15 C 0.12 3.67 5.88 86.38 0.51 4.17 16 16 N -0.61 -16.05 2.85 -846.77 -2.41 -18.47 16 17 C 0.05 0.71 8.46 127.77 1.08 1.80 16 18 C 0.50 16.95 6.14 87.66 0.54 17.48 16 19 O -0.56 -26.56 14.63 7.87 0.12 -26.45 16 20 C -0.06 -1.48 0.49 -52.93 -0.03 -1.50 16 21 C -0.11 -2.23 4.75 30.59 0.15 -2.08 16 22 C -0.11 -1.49 5.71 30.59 0.17 -1.31 16 23 C -0.09 -1.15 3.19 -10.79 -0.03 -1.19 16 24 C -0.11 -2.17 5.71 30.61 0.17 -2.00 16 25 C -0.09 -2.70 4.34 30.61 0.13 -2.57 16 26 C -0.11 -1.22 5.71 30.58 0.17 -1.05 16 27 C -0.12 -2.06 4.56 30.58 0.14 -1.92 16 28 H 0.00 0.04 7.35 -2.39 -0.02 0.02 16 29 H 0.00 0.02 7.26 -2.39 -0.02 0.01 16 30 H 0.00 -0.21 7.84 -2.39 -0.02 -0.23 16 31 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.07 3.03 8.04 -2.39 -0.02 3.01 16 33 H 0.04 1.94 7.86 -2.38 -0.02 1.92 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.13 2.49 8.07 -2.39 -0.02 2.48 16 39 H 0.04 1.77 7.47 -2.39 -0.02 1.75 16 40 H 0.08 0.76 7.22 -2.39 -0.02 0.74 16 41 H 0.10 1.21 2.87 -2.39 -0.01 1.20 16 42 H 0.08 0.86 8.11 -2.39 -0.02 0.85 16 43 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.09 1.48 5.11 -2.39 -0.01 1.47 16 45 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.03 1.19 7.99 -2.38 -0.02 1.17 16 52 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.11 1.25 3.76 -2.38 -0.01 1.25 16 55 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -86.05 406.43 4.31 -81.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.84 Total: 11.66 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.79 Total: 18.30 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.29 Total: -117.60 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.07 Total: -44.43 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -86.05 4.31 -81.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316768140.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -86.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds