Wall clock time and date at job start Tue Mar 31 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00186 * 2 1 4 4 C 1.50700 * 119.99832 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47387 * 4.99014 * 4 2 1 6 6 C 1.53003 * 109.46841 * 244.99275 * 4 2 1 7 7 C 1.50708 * 109.47065 * 173.17250 * 6 4 2 8 8 O 1.21281 * 119.99844 * 1.91955 * 7 6 4 9 9 N 1.34773 * 119.99890 * 181.91300 * 7 6 4 10 10 C 1.46930 * 120.63213 * 4.06615 * 9 7 6 11 11 C 1.53189 * 108.77853 * 126.40909 * 10 9 7 12 12 C 1.53040 * 109.30957 * 54.63479 * 11 10 9 13 13 C 1.53079 * 109.65934 * 298.69771 * 12 11 10 14 14 C 1.46924 * 120.62924 * 184.08230 * 9 7 6 15 15 H 1.08999 * 109.58807 * 113.65993 * 14 9 7 16 16 C 1.53002 * 109.58839 * 353.37761 * 14 9 7 17 17 N 1.46498 * 109.47244 * 180.20317 * 16 14 9 18 18 C 1.46497 * 120.00128 * 275.32647 * 17 16 14 19 19 C 1.36940 * 119.99785 * 95.32646 * 17 16 14 20 20 H 1.08008 * 119.99591 * 221.85181 * 19 17 16 21 21 C 1.38807 * 120.00289 * 41.84868 * 19 17 16 22 22 N 1.31616 * 120.00098 * 20.08808 * 21 19 17 23 23 Si 1.86803 * 120.00213 * 200.08920 * 21 19 17 24 24 H 1.48506 * 109.47006 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47212 * 119.99573 * 23 21 19 26 26 H 1.48496 * 109.47367 * 240.00346 * 23 21 19 27 27 O 1.42901 * 109.47326 * 124.99608 * 4 2 1 28 28 C 1.42896 * 113.99811 * 274.11917 * 27 4 2 29 29 C 1.53007 * 109.47102 * 184.88244 * 28 27 4 30 30 H 1.08004 * 120.00164 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99865 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47512 * 270.00360 * 3 2 1 33 33 H 1.08999 * 109.47071 * 30.00478 * 3 2 1 34 34 H 1.09007 * 109.47285 * 150.00214 * 3 2 1 35 35 H 1.09005 * 109.47100 * 53.17713 * 6 4 2 36 36 H 1.08996 * 109.47359 * 293.17665 * 6 4 2 37 37 H 1.08997 * 109.58551 * 246.19864 * 10 9 7 38 38 H 1.09000 * 109.58734 * 6.47725 * 10 9 7 39 39 H 1.09001 * 109.49877 * 174.58655 * 11 10 9 40 40 H 1.09000 * 109.49917 * 294.65481 * 11 10 9 41 41 H 1.08996 * 109.46521 * 58.65734 * 12 11 10 42 42 H 1.09006 * 109.46204 * 178.63177 * 12 11 10 43 43 H 1.09003 * 109.38986 * 301.27986 * 13 12 11 44 44 H 1.09001 * 109.62101 * 181.17116 * 13 12 11 45 45 H 1.08997 * 109.47078 * 60.19837 * 16 14 9 46 46 H 1.09004 * 109.46897 * 300.20438 * 16 14 9 47 47 H 1.09006 * 109.46938 * 274.94577 * 18 17 16 48 48 H 1.09004 * 109.47079 * 34.94635 * 18 17 16 49 49 H 1.09001 * 109.47412 * 154.94665 * 18 17 16 50 50 H 0.97001 * 119.99881 * 5.80008 * 22 21 19 51 51 H 1.09001 * 109.47442 * 304.87791 * 28 27 4 52 52 H 1.09001 * 109.47554 * 64.88093 * 28 27 4 53 53 H 1.09003 * 109.47317 * 175.07389 * 29 28 27 54 54 H 1.09002 * 109.46699 * 295.06955 * 29 28 27 55 55 H 1.08998 * 109.46859 * 55.06777 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1316 -0.0903 6 6 2.8465 -1.4424 1.3067 7 6 3.4640 -2.8153 1.3806 8 8 3.3234 -3.5936 0.4612 9 7 4.1723 -3.1779 2.4683 10 6 4.2772 -2.2803 3.6268 11 6 3.8453 -3.0437 4.8827 12 6 4.6713 -4.3263 5.0045 13 6 4.4195 -5.2186 3.7864 14 6 4.8547 -4.4781 2.5179 15 1 5.9336 -4.3241 2.5367 16 6 4.4758 -5.3036 1.2866 17 7 5.1537 -6.6011 1.3412 18 6 6.5247 -6.7329 0.8421 19 6 4.5056 -7.6909 1.8586 20 1 5.0326 -8.3744 2.5080 21 6 3.1717 -7.9171 1.5486 22 7 2.6383 -7.3532 0.4856 23 14 2.1333 -9.0217 2.6400 24 1 2.9628 -9.5295 3.7624 25 1 0.9879 -8.2471 3.1815 26 1 1.6242 -10.1671 1.8438 27 8 2.9708 -1.3309 -1.1043 28 6 2.3874 -1.7888 -2.3257 29 6 3.4706 -1.8908 -3.4015 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2452 1.6198 -1.0277 33 1 1.4745 2.0647 0.5139 34 1 3.0160 1.1747 0.5138 35 1 2.1716 -1.3017 2.1510 36 1 3.6326 -0.6882 1.3403 37 1 5.3089 -1.9469 3.7385 38 1 3.6282 -1.4170 3.4801 39 1 4.0094 -2.4204 5.7618 40 1 2.7877 -3.2972 4.8087 41 1 5.7303 -4.0730 5.0538 42 1 4.3829 -4.8594 5.9105 43 1 3.3571 -5.4541 3.7238 44 1 4.9921 -6.1410 3.8838 45 1 4.7804 -4.7721 0.3851 46 1 3.3968 -5.4576 1.2705 47 1 6.5046 -6.9071 -0.2337 48 1 7.0772 -5.8169 1.0517 49 1 7.0124 -7.5727 1.3371 50 1 3.1960 -6.8487 -0.1271 51 1 1.9379 -2.7693 -2.1686 52 1 1.6201 -1.0849 -2.6483 53 1 3.0439 -2.3224 -4.3070 54 1 3.8592 -0.8964 -3.6212 55 1 4.2803 -2.5262 -3.0427 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316802107.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:04 Heat of formation + Delta-G solvation = -57.620162 kcal Electronic energy + Delta-G solvation = -32570.643052 eV Core-core repulsion = 28608.326768 eV Total energy + Delta-G solvation = -3962.316283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58214 -39.71554 -38.22249 -37.46200 -36.10980 -33.93226 -33.50733 -32.73397 -32.11442 -30.76465 -28.24116 -28.11870 -27.38868 -25.93643 -24.88752 -23.79737 -23.71319 -22.10968 -21.67177 -19.98995 -19.63395 -19.24195 -17.95874 -17.58620 -17.03292 -16.64669 -16.44692 -15.91387 -15.75538 -15.63891 -15.43985 -15.26274 -15.15316 -14.88348 -14.81164 -14.40116 -14.30634 -14.09452 -13.99661 -13.75256 -13.43657 -13.23929 -13.17954 -12.93889 -12.85614 -12.78221 -12.67871 -12.62569 -12.47763 -12.28863 -11.96602 -11.92608 -11.91629 -11.86260 -11.78512 -11.51927 -11.38212 -11.30137 -10.50698 -10.48208 -10.20143 -10.05643 -9.39701 -8.78263 -8.04177 -5.55793 1.17769 1.50613 1.59902 1.75109 1.79384 2.08522 2.63600 2.75929 3.28717 3.50217 3.72450 3.87155 3.91238 3.92647 3.99100 4.03989 4.10719 4.15605 4.23612 4.30449 4.38399 4.39525 4.42973 4.45827 4.57827 4.63148 4.66390 4.73149 4.74297 4.75652 4.83677 4.84360 4.89481 4.93975 4.94335 4.98000 5.02887 5.04292 5.08537 5.16618 5.18275 5.18481 5.28912 5.37725 5.49593 5.61355 5.63715 5.81463 5.88562 5.95493 6.31289 6.42262 6.60984 7.16623 7.40613 7.82593 8.29766 9.01090 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.004249 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.242152 B = 6588.659763 C = 7511.154278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C -0.106 4.106 4 C 0.139 3.861 5 H 0.040 0.960 6 C -0.120 4.120 7 C 0.493 3.507 8 O -0.560 6.560 9 N -0.612 5.612 10 C 0.101 3.899 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.102 4.102 14 C 0.138 3.862 15 H 0.054 0.946 16 C 0.174 3.826 17 N -0.622 5.622 18 C 0.126 3.874 19 C -0.348 4.348 20 H 0.040 0.960 21 C -0.065 4.065 22 N -0.932 5.932 23 Si 1.110 2.890 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.289 1.289 27 O -0.382 6.382 28 C 0.064 3.936 29 C -0.142 4.142 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.055 0.945 47 H -0.014 1.014 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.252 0.748 51 H 0.020 0.980 52 H 0.061 0.939 53 H 0.083 0.917 54 H 0.075 0.925 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 21.233 5.977 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.081 3.919 5 H 0.058 0.942 6 C -0.159 4.159 7 C 0.282 3.718 8 O -0.437 6.437 9 N -0.346 5.346 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.141 4.141 14 C 0.033 3.967 15 H 0.072 0.928 16 C 0.049 3.951 17 N -0.348 5.348 18 C -0.019 4.019 19 C -0.479 4.479 20 H 0.058 0.942 21 C -0.264 4.264 22 N -0.572 5.572 23 Si 0.935 3.065 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.216 1.216 27 O -0.301 6.301 28 C -0.012 4.012 29 C -0.199 4.199 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.005 0.995 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.039 0.961 52 H 0.079 0.921 53 H 0.102 0.898 54 H 0.094 0.906 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.687 20.290 5.742 21.155 hybrid contribution 1.331 -0.413 -0.889 1.653 sum -0.356 19.877 4.853 20.464 Atomic orbital electron populations 1.23947 0.94911 1.02783 0.99918 1.22245 0.95700 0.96039 1.01383 1.20736 1.00225 0.92885 1.02408 1.20807 0.90563 0.94133 0.86437 0.94227 1.21835 1.02029 0.93731 0.98334 1.21333 0.78600 0.90134 0.81733 1.90855 1.59798 1.53553 1.39522 1.48414 1.51049 1.18136 1.17014 1.22072 1.03413 0.92514 0.83991 1.21910 0.99485 0.96743 0.98503 1.21561 1.00764 0.96236 0.96700 1.21607 0.99543 0.98511 0.94418 1.21754 0.94607 0.82522 0.97823 0.92847 1.21223 0.97765 0.83371 0.92763 1.44395 1.12816 1.05892 1.71724 1.21084 0.86860 0.98945 0.95016 1.19937 0.97280 1.05298 1.25339 0.94220 1.27305 0.98983 1.01520 0.98550 1.70767 1.39805 1.35414 1.11204 0.82963 0.74635 0.74445 0.74497 1.19048 1.21607 1.21583 1.87846 1.37626 1.86543 1.18108 1.22408 0.96701 0.97046 0.85089 1.21691 0.98305 1.02755 0.97196 0.89430 0.85654 0.91692 0.90052 0.91446 0.85409 0.85878 0.89824 0.87076 0.87199 0.92896 0.91034 0.91173 0.95625 0.92326 0.96104 0.92660 0.99545 0.94053 0.93709 0.93806 0.96110 0.92131 0.89782 0.90643 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 13.91 67.78 0.94 -2.39 16 2 C -0.15 -3.17 4.95 -16.49 -0.08 -3.25 16 3 C -0.11 -1.66 9.84 71.23 0.70 -0.96 16 4 C 0.14 3.96 1.85 29.85 0.06 4.02 16 5 H 0.04 1.38 7.20 -2.39 -0.02 1.37 16 6 C -0.12 -3.05 3.60 29.85 0.11 -2.94 16 7 C 0.49 18.31 7.51 87.66 0.66 18.97 16 8 O -0.56 -27.48 10.84 9.74 0.11 -27.38 16 9 N -0.61 -20.67 2.97 -795.02 -2.36 -23.04 16 10 C 0.10 2.15 6.33 86.36 0.55 2.69 16 11 C -0.13 -2.68 6.08 30.67 0.19 -2.50 16 12 C -0.12 -3.09 5.88 30.63 0.18 -2.91 16 13 C -0.10 -4.06 4.68 30.68 0.14 -3.92 16 14 C 0.14 5.75 3.19 44.98 0.14 5.89 16 15 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 16 C 0.17 9.26 2.57 86.38 0.22 9.48 16 17 N -0.62 -34.37 2.25 -726.92 -1.63 -36.01 16 18 C 0.13 6.04 10.72 127.77 1.37 7.41 16 19 C -0.35 -20.52 7.82 84.03 0.66 -19.86 16 20 H 0.04 2.35 7.91 -2.91 -0.02 2.32 16 21 C -0.07 -3.95 4.89 84.86 0.42 -3.53 16 22 N -0.93 -61.82 12.36 21.65 0.27 -61.55 16 23 Si 1.11 53.88 29.96 68.60 2.06 55.93 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 O -0.38 -12.39 9.16 -136.21 -1.25 -13.64 16 28 C 0.06 1.96 6.48 71.98 0.47 2.43 16 29 C -0.14 -3.85 10.28 71.98 0.74 -3.11 16 30 H 0.09 1.82 7.84 -2.91 -0.02 1.80 16 31 H 0.13 1.70 8.04 -2.91 -0.02 1.68 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.07 1.01 7.06 -2.38 -0.02 1.00 16 35 H 0.13 2.49 7.42 -2.38 -0.02 2.47 16 36 H 0.12 2.50 7.25 -2.39 -0.02 2.48 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.63 5.93 -2.39 -0.01 1.62 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 2.62 6.98 -2.39 -0.02 2.60 16 45 H 0.02 1.20 6.38 -2.39 -0.02 1.19 16 46 H 0.06 3.43 4.69 -2.39 -0.01 3.42 16 47 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 48 H 0.04 1.75 8.09 -2.38 -0.02 1.73 16 49 H 0.04 2.02 8.00 -2.39 -0.02 2.00 16 50 H 0.25 17.68 7.03 -92.71 -0.65 17.02 16 51 H 0.02 0.76 7.98 -2.39 -0.02 0.74 16 52 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 53 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 54 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 55 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -80.99 421.13 5.58 -75.41 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.94 Total: 24.75 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.46 Total: 5.52 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.73 Total: -120.60 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.14 Total: -41.01 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 2.06 Total: 55.93 kcal Total: -80.99 5.58 -75.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316802107.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.787 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds