Wall clock time and date at job start Tue Mar 31 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00190 * 2 1 4 4 H 1.07998 * 119.99963 * 323.08628 * 3 2 1 5 5 C 1.38809 * 120.00116 * 143.09252 * 3 2 1 6 6 N 1.31618 * 119.99993 * 156.12436 * 5 3 2 7 7 Si 1.86800 * 120.00060 * 336.12830 * 5 3 2 8 8 H 1.48506 * 109.47066 * 95.29652 * 7 5 3 9 9 H 1.48495 * 109.46995 * 215.29694 * 7 5 3 10 10 H 1.48504 * 109.46979 * 335.29698 * 7 5 3 11 11 C 1.46500 * 119.99717 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47122 * 96.00081 * 11 2 1 13 13 H 1.08992 * 109.58708 * 58.89031 * 12 11 2 14 14 C 1.53195 * 109.58392 * 298.46313 * 12 11 2 15 15 C 1.53033 * 109.31203 * 185.57945 * 14 12 11 16 16 C 1.53042 * 109.54173 * 61.36573 * 15 14 12 17 17 C 1.53625 * 109.23868 * 298.51189 * 16 15 14 18 18 N 1.46921 * 108.54470 * 54.85280 * 17 16 15 19 19 C 1.34786 * 120.63039 * 126.36849 * 18 17 16 20 20 O 1.21283 * 119.99871 * 184.70545 * 19 18 17 21 21 C 1.50704 * 119.99882 * 4.70351 * 19 18 17 22 22 C 1.52996 * 109.46879 * 182.51997 * 21 19 18 23 23 C 1.53007 * 109.46680 * 176.15844 * 22 21 19 24 24 H 1.08993 * 109.48126 * 55.00757 * 23 22 21 25 25 C 1.53093 * 109.47825 * 175.02546 * 23 22 21 26 26 C 1.53178 * 109.16473 * 177.58136 * 25 23 22 27 27 C 1.53175 * 109.04338 * 303.04120 * 26 25 23 28 28 C 1.53091 * 109.16804 * 56.97204 * 27 26 25 29 29 O 1.42902 * 109.48330 * 294.97759 * 23 22 21 30 30 H 1.09005 * 109.46715 * 272.43649 * 1 2 3 31 31 H 1.09003 * 109.46938 * 32.43599 * 1 2 3 32 32 H 1.08993 * 109.46868 * 152.43640 * 1 2 3 33 33 H 0.96997 * 120.00118 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.47658 * 335.99935 * 11 2 1 35 35 H 1.09008 * 109.47222 * 215.99606 * 11 2 1 36 36 H 1.09001 * 109.49675 * 305.52585 * 14 12 11 37 37 H 1.08999 * 109.49686 * 65.62562 * 14 12 11 38 38 H 1.09004 * 109.46345 * 181.38566 * 15 14 12 39 39 H 1.09002 * 109.46474 * 301.34503 * 15 14 12 40 40 H 1.08996 * 109.49908 * 58.58500 * 16 15 14 41 41 H 1.09005 * 109.50144 * 178.65258 * 16 15 14 42 42 H 1.09001 * 109.74256 * 295.11622 * 17 16 15 43 43 H 1.09007 * 109.66622 * 174.55073 * 17 16 15 44 44 H 1.09000 * 109.46690 * 62.52397 * 21 19 18 45 45 H 1.08997 * 109.46966 * 302.52889 * 21 19 18 46 46 H 1.09004 * 109.47211 * 56.16774 * 22 21 19 47 47 H 1.08991 * 109.47483 * 296.16241 * 22 21 19 48 48 H 1.08998 * 109.52663 * 297.50309 * 25 23 22 49 49 H 1.09005 * 109.52300 * 57.68650 * 25 23 22 50 50 H 1.08997 * 109.54337 * 183.16461 * 26 25 23 51 51 H 1.09005 * 109.52865 * 62.90468 * 26 25 23 52 52 H 1.09000 * 109.52220 * 297.06282 * 27 26 25 53 53 H 1.09008 * 109.57142 * 176.91121 * 27 26 25 54 54 H 1.08996 * 109.48267 * 182.41164 * 28 27 26 55 55 H 1.08997 * 109.47717 * 62.37098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7722 2.0275 -0.5617 5 6 3.3292 1.3063 0.7219 6 7 4.2188 2.2150 0.3823 7 14 3.6540 0.1788 2.1753 8 1 4.4680 -0.9808 1.7300 9 1 4.3902 0.9258 3.2265 10 1 2.3620 -0.3052 2.7248 11 6 2.1975 -1.2688 0.0006 12 6 2.5831 -1.6357 -1.4339 13 1 3.1983 -0.8438 -1.8608 14 6 1.3161 -1.8163 -2.2760 15 6 1.7018 -2.3177 -3.6694 16 6 2.3998 -3.6744 -3.5502 17 6 3.6839 -3.5120 -2.7226 18 7 3.3350 -2.8980 -1.4343 19 6 3.7026 -3.4787 -0.2748 20 8 3.3361 -3.0088 0.7816 21 6 4.5688 -4.7118 -0.2911 22 6 4.7856 -5.2016 1.1420 23 6 5.5843 -6.5064 1.1196 24 1 6.5116 -6.3555 0.5671 25 6 5.9082 -6.9314 2.5542 26 6 6.6549 -8.2686 2.5262 27 6 5.7977 -9.3043 1.7922 28 6 5.4783 -8.7876 0.3870 29 8 4.8118 -7.5272 0.4845 30 1 -0.3633 0.0437 1.0268 31 1 -0.3633 0.8674 -0.5512 32 1 -0.3633 -0.9110 -0.4755 33 1 5.0429 2.2994 0.8869 34 1 1.5662 -2.0526 0.4189 35 1 3.0993 -1.1675 0.6046 36 1 0.6609 -2.5433 -1.7962 37 1 0.7982 -0.8611 -2.3634 38 1 0.8041 -2.4236 -4.2787 39 1 2.3767 -1.6022 -4.1390 40 1 1.7345 -4.3840 -3.0584 41 1 2.6529 -4.0421 -4.5447 42 1 4.3863 -2.8705 -3.2548 43 1 4.1360 -4.4890 -2.5513 44 1 5.5316 -4.4734 -0.7431 45 1 4.0781 -5.4928 -0.8719 46 1 3.8198 -5.3750 1.6168 47 1 5.3367 -4.4478 1.7042 48 1 6.5345 -6.1742 3.0259 49 1 4.9825 -7.0431 3.1189 50 1 6.8392 -8.6048 3.5465 51 1 7.6040 -8.1451 2.0044 52 1 4.8697 -9.4641 2.3413 53 1 6.3441 -10.2448 1.7191 54 1 4.8328 -9.5014 -0.1248 55 1 6.4043 -8.6666 -0.1750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316804556.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:32 Heat of formation + Delta-G solvation = -81.909346 kcal Electronic energy + Delta-G solvation = -31931.817649 eV Core-core repulsion = 27968.448108 eV Total energy + Delta-G solvation = -3963.369541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61357 -40.34848 -38.55404 -37.43653 -35.06603 -34.53628 -33.94613 -33.72869 -32.38910 -30.84775 -28.66262 -27.71760 -26.79155 -25.52812 -24.78837 -23.74849 -22.89525 -22.29481 -21.58806 -21.16292 -19.78205 -19.03101 -17.70541 -17.42710 -17.34098 -17.05230 -16.68713 -16.43704 -15.75823 -15.56167 -15.40162 -15.33445 -15.15675 -14.92441 -14.82914 -14.68630 -14.57618 -14.20436 -14.13255 -13.78344 -13.61799 -13.59570 -13.12707 -13.09154 -12.98028 -12.74937 -12.71889 -12.43546 -12.23415 -12.11925 -12.08809 -11.93287 -11.85792 -11.82408 -11.60309 -11.57055 -11.48615 -11.37122 -11.17306 -10.67403 -10.34944 -10.17827 -9.45870 -8.72034 -8.25753 -5.59179 1.31133 1.38059 1.51018 1.71226 2.04657 2.40062 2.84349 3.02243 3.45613 3.58470 3.73125 3.86944 3.92900 3.95114 3.95487 4.03914 4.06062 4.12868 4.16404 4.28950 4.33264 4.39627 4.43507 4.49506 4.58013 4.61227 4.64251 4.67419 4.71897 4.75430 4.84573 4.87714 4.90769 4.93121 4.97540 5.01200 5.05162 5.07730 5.08964 5.13155 5.14364 5.18555 5.20430 5.26714 5.27337 5.32328 5.39758 5.49518 5.73105 5.91400 6.11877 6.34762 6.55375 6.96559 7.29561 7.64042 8.06740 8.93002 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003626 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.766450 B = 7720.481946 C = 9272.775851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.629 5.629 3 C -0.254 4.254 4 H 0.051 0.949 5 C -0.007 4.007 6 N -0.939 5.939 7 Si 0.938 3.062 8 H -0.273 1.273 9 H -0.312 1.312 10 H -0.287 1.287 11 C 0.154 3.846 12 C 0.134 3.866 13 H 0.042 0.958 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.124 4.124 17 C 0.099 3.901 18 N -0.610 5.610 19 C 0.492 3.508 20 O -0.577 6.577 21 C -0.122 4.122 22 C -0.095 4.095 23 C 0.099 3.901 24 H 0.074 0.926 25 C -0.155 4.155 26 C -0.121 4.121 27 C -0.156 4.156 28 C 0.054 3.946 29 O -0.396 6.396 30 H 0.003 0.997 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.060 0.940 53 H 0.090 0.910 54 H 0.104 0.896 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -27.068 -6.987 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.355 5.355 3 C -0.384 4.384 4 H 0.069 0.931 5 C -0.204 4.204 6 N -0.583 5.583 7 Si 0.770 3.230 8 H -0.200 1.200 9 H -0.242 1.242 10 H -0.213 1.213 11 C 0.030 3.970 12 C 0.028 3.972 13 H 0.060 0.940 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.023 4.023 18 N -0.343 5.343 19 C 0.282 3.718 20 O -0.457 6.457 21 C -0.161 4.161 22 C -0.133 4.133 23 C 0.042 3.958 24 H 0.092 0.908 25 C -0.192 4.192 26 C -0.158 4.158 27 C -0.193 4.193 28 C -0.022 4.022 29 O -0.316 6.316 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.109 0.891 54 H 0.122 0.878 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.704 -26.732 -6.483 27.755 hybrid contribution 0.411 0.420 1.324 1.449 sum 4.115 -26.312 -5.158 27.127 Atomic orbital electron populations 1.21221 0.82871 1.00244 0.97889 1.44575 1.02271 1.02033 1.86665 1.18720 1.04849 0.91484 1.23318 0.93117 1.25828 0.97193 0.97820 0.99547 1.69977 1.08585 1.38920 1.40862 0.85975 0.77524 0.78050 0.81435 1.19982 1.24160 1.21267 1.21721 0.96148 0.85390 0.93748 1.21748 0.92913 0.83970 0.98556 0.94021 1.21783 0.95872 1.01063 0.96253 1.21531 1.01229 0.97405 0.95273 1.21954 0.96113 0.96876 1.01259 1.22179 0.98013 0.99536 0.82552 1.48447 1.55138 1.23599 1.07162 1.21577 0.80861 0.86239 0.83077 1.90770 1.57192 1.64940 1.32822 1.21655 1.00424 0.94294 0.99732 1.21316 1.00893 0.95171 0.95943 1.22027 0.93973 0.86789 0.93036 0.90822 1.22220 1.01144 0.98815 0.97069 1.21597 0.98645 0.94005 1.01566 1.22193 1.00608 0.99555 0.96962 1.22754 0.98274 0.84776 0.96371 1.87917 1.43643 1.20491 1.79515 0.97857 0.93723 0.92225 0.92925 0.93706 0.92709 0.92420 0.91904 0.90113 0.92424 0.91471 0.87719 0.91066 0.86867 0.87130 0.86282 0.92545 0.91502 0.90734 0.92347 0.90942 0.90840 0.92134 0.89102 0.87799 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.25 9.72 127.77 1.24 6.50 16 2 N -0.63 -32.75 2.15 -726.92 -1.56 -34.31 16 3 C -0.25 -15.34 9.88 84.03 0.83 -14.51 16 4 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 5 C -0.01 -0.43 5.31 84.86 0.45 0.02 16 6 N -0.94 -61.20 13.97 21.65 0.30 -60.90 16 7 Si 0.94 53.73 25.02 68.60 1.72 55.44 16 8 H -0.27 -15.60 6.06 99.48 0.60 -15.00 16 9 H -0.31 -17.65 7.11 99.48 0.71 -16.94 16 10 H -0.29 -16.79 7.11 99.48 0.71 -16.09 16 11 C 0.15 7.58 2.58 86.38 0.22 7.80 16 12 C 0.13 5.43 3.15 44.98 0.14 5.57 16 13 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -3.63 4.17 30.67 0.13 -3.51 16 15 C -0.12 -2.76 5.88 30.62 0.18 -2.58 16 16 C -0.12 -2.26 6.10 30.82 0.19 -2.08 16 17 C 0.10 2.10 6.36 86.51 0.55 2.65 16 18 N -0.61 -20.03 2.97 -794.17 -2.36 -22.39 16 19 C 0.49 17.29 7.61 87.66 0.67 17.96 16 20 O -0.58 -26.21 10.67 -3.04 -0.03 -26.25 16 21 C -0.12 -2.91 4.09 29.85 0.12 -2.79 16 22 C -0.10 -2.44 4.23 30.60 0.13 -2.31 16 23 C 0.10 1.91 2.64 30.63 0.08 1.99 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 C -0.15 -2.79 5.42 30.69 0.17 -2.62 16 26 C -0.12 -1.60 6.03 30.71 0.19 -1.41 16 27 C -0.16 -1.87 6.14 30.68 0.19 -1.68 16 28 C 0.05 0.71 6.84 72.01 0.49 1.20 16 29 O -0.40 -7.74 9.88 -148.98 -1.47 -9.21 16 30 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.04 1.83 8.06 -2.39 -0.02 1.81 16 32 H 0.06 2.18 6.87 -2.39 -0.02 2.17 16 33 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 34 H 0.04 2.21 6.99 -2.39 -0.02 2.20 16 35 H 0.06 3.03 1.44 -2.38 0.00 3.03 16 36 H 0.06 1.84 8.06 -2.39 -0.02 1.82 16 37 H 0.06 2.26 6.94 -2.39 -0.02 2.24 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 1.69 5.92 -2.38 -0.01 1.68 16 44 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.12 2.33 6.94 -2.39 -0.02 2.31 16 46 H 0.06 1.69 8.03 -2.38 -0.02 1.67 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 54 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -79.45 403.24 3.29 -76.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.73 Total: 11.25 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.97 Total: 10.21 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -3.62 Total: -117.60 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.50 Total: -35.46 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 1.72 Total: 55.44 kcal Total: -79.45 3.29 -76.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316804556.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.750 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds