Wall clock time and date at job start Tue Mar 31 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99713 * 2 1 4 4 H 1.09002 * 109.47699 * 11.99972 * 3 2 1 5 5 C 1.50697 * 109.47336 * 132.00397 * 3 2 1 6 6 O 1.21283 * 119.99825 * 8.76793 * 5 3 2 7 7 N 1.34773 * 120.00186 * 188.77035 * 5 3 2 8 8 C 1.46503 * 120.00414 * 5.10698 * 7 5 3 9 9 C 1.46501 * 119.99868 * 185.10614 * 7 5 3 10 10 C 1.53350 * 109.41769 * 240.12580 * 9 7 5 11 11 C 1.53197 * 109.14711 * 178.67704 * 10 9 7 12 12 N 1.46929 * 108.89258 * 54.57988 * 11 10 9 13 13 C 1.36940 * 120.62861 * 126.30167 * 12 11 10 14 14 H 1.08003 * 119.99736 * 331.08235 * 13 12 11 15 15 C 1.38810 * 120.00071 * 151.08525 * 13 12 11 16 16 N 1.31620 * 119.99647 * 345.26866 * 15 13 12 17 17 Si 1.86795 * 119.99940 * 165.26486 * 15 13 12 18 18 H 1.48496 * 109.47365 * 90.00099 * 17 15 13 19 19 H 1.48509 * 109.47009 * 209.99958 * 17 15 13 20 20 H 1.48503 * 109.47345 * 329.99978 * 17 15 13 21 21 C 1.46923 * 118.73556 * 306.31583 * 12 11 10 22 22 C 1.53046 * 109.45933 * 120.00381 * 9 7 5 23 23 C 1.53004 * 109.47142 * 252.00091 * 3 2 1 24 24 C 1.53001 * 109.47062 * 65.64023 * 23 3 2 25 25 C 1.52998 * 109.47356 * 180.02562 * 24 23 3 26 26 C 1.53005 * 109.46915 * 60.00028 * 25 24 23 27 27 C 1.52995 * 109.47369 * 300.00094 * 26 25 24 28 28 C 1.53000 * 109.46859 * 305.64446 * 23 3 2 29 29 H 1.09001 * 109.47674 * 299.71663 * 1 2 3 30 30 H 1.09008 * 109.47154 * 59.71465 * 1 2 3 31 31 H 1.09005 * 109.47375 * 179.71283 * 1 2 3 32 32 H 1.08996 * 109.46909 * 273.79134 * 8 7 5 33 33 H 1.09004 * 109.46408 * 33.78711 * 8 7 5 34 34 H 1.08994 * 109.47280 * 153.78688 * 8 7 5 35 35 H 1.08999 * 109.46249 * 0.02789 * 9 7 5 36 36 H 1.09000 * 109.68572 * 58.71321 * 10 9 7 37 37 H 1.09004 * 109.47741 * 298.51195 * 10 9 7 38 38 H 1.09001 * 109.58945 * 294.71857 * 11 10 9 39 39 H 1.08998 * 109.58732 * 174.43730 * 11 10 9 40 40 H 0.97001 * 119.99840 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.58222 * 173.39779 * 21 12 11 42 42 H 1.08990 * 109.58944 * 293.67686 * 21 12 11 43 43 H 1.08997 * 109.50188 * 61.43027 * 22 9 7 44 44 H 1.09005 * 109.49221 * 301.33316 * 22 9 7 45 45 H 1.08998 * 109.47694 * 185.64176 * 23 3 2 46 46 H 1.08998 * 109.46991 * 300.00584 * 24 23 3 47 47 H 1.09004 * 109.46761 * 60.00016 * 24 23 3 48 48 H 1.09003 * 109.47061 * 300.00275 * 25 24 23 49 49 H 1.09001 * 109.47480 * 180.02562 * 25 24 23 50 50 H 1.08997 * 109.46877 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.47054 * 60.00243 * 26 25 24 52 52 H 1.09003 * 109.47153 * 300.00088 * 27 26 25 53 53 H 1.08994 * 109.47290 * 179.97438 * 27 26 25 54 54 H 1.08995 * 109.47313 * 299.99728 * 28 23 3 55 55 H 1.09003 * 109.47377 * 59.99865 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2396 2.0463 0.2137 5 6 3.0830 1.3778 1.0558 6 8 3.4370 0.3702 1.6306 7 7 3.6492 2.5620 1.3612 8 6 3.1457 3.7943 0.7493 9 6 4.7681 2.6172 2.3053 10 6 4.3817 3.4930 3.5033 11 6 5.5433 3.5195 4.5018 12 7 6.7612 3.9528 3.8033 13 6 7.4995 5.0050 4.2758 14 1 7.0178 5.7967 4.8304 15 6 8.8668 5.0540 4.0417 16 7 9.5032 3.9774 3.6312 17 14 9.8037 6.6477 4.3093 18 1 10.2927 6.7053 5.7102 19 1 10.9597 6.7045 3.3788 20 1 8.9036 7.8003 4.0514 21 6 7.1716 3.2360 2.5882 22 6 5.9941 3.2120 1.6086 23 6 2.6248 1.5901 -1.3719 24 6 1.5157 1.6559 -2.4239 25 6 2.1303 1.9399 -3.7959 26 6 3.1102 0.8217 -4.1571 27 6 4.2193 0.7559 -3.1052 28 6 3.6049 0.4723 -1.7334 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5183 -0.8875 31 1 -0.3634 -1.0277 -0.0052 32 1 3.6348 3.9484 -0.2125 33 1 2.0690 3.7123 0.6005 34 1 3.3588 4.6387 1.4047 35 1 5.0005 1.6104 2.6523 36 1 3.4953 3.0828 3.9872 37 1 4.1735 4.5065 3.1605 38 1 5.6939 2.5217 4.9139 39 1 5.3165 4.2173 5.3078 40 1 10.4587 4.0115 3.4680 41 1 8.0177 3.7483 2.1301 42 1 7.4573 2.2160 2.8446 43 1 5.7706 4.2281 1.2834 44 1 6.2530 2.6013 0.7436 45 1 3.1544 2.5423 -1.3424 46 1 0.9861 0.7037 -2.4534 47 1 0.8174 2.4522 -2.1663 48 1 2.6603 2.8920 -3.7666 49 1 1.3402 1.9872 -4.5453 50 1 3.5484 1.0243 -5.1344 51 1 2.5803 -0.1304 -4.1864 52 1 4.7492 1.7080 -3.0759 53 1 4.9171 -0.0410 -3.3623 54 1 4.3950 0.4254 -0.9841 55 1 3.0753 -0.4799 -1.7631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316936770.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:19 Heat of formation + Delta-G solvation = -93.855595 kcal Electronic energy + Delta-G solvation = -32071.972758 eV Core-core repulsion = 28108.085188 eV Total energy + Delta-G solvation = -3963.887570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71321 -39.90296 -38.77427 -37.89592 -36.56366 -34.41992 -32.93124 -31.85678 -31.65080 -31.29971 -28.61704 -27.97991 -27.20726 -26.24904 -23.94494 -23.86847 -23.41769 -22.57758 -20.83913 -20.68283 -20.15874 -18.76976 -18.22026 -17.59883 -17.21470 -16.96902 -16.65472 -16.01449 -15.77525 -15.68127 -15.40662 -15.26714 -15.02420 -14.89698 -14.79323 -14.47041 -14.27378 -14.14792 -13.94048 -13.87363 -13.25112 -13.19197 -13.15724 -13.03734 -12.99736 -12.77176 -12.62931 -12.50957 -12.35206 -12.13295 -12.01765 -11.98873 -11.89627 -11.83852 -11.49541 -11.44103 -11.34864 -11.18138 -11.14283 -10.80621 -10.57637 -10.21420 -9.59936 -8.71166 -7.87548 -5.36046 1.48408 1.49151 1.55183 1.59407 1.82002 2.51479 2.92659 3.29022 3.42898 3.60479 3.63856 3.72459 3.84053 3.92998 4.01479 4.04244 4.26791 4.31356 4.31936 4.38283 4.40821 4.44306 4.52240 4.55141 4.57781 4.61429 4.65773 4.66455 4.68614 4.71087 4.76366 4.84437 4.86083 4.94885 5.02602 5.02808 5.04696 5.11922 5.17632 5.26172 5.27701 5.30618 5.31928 5.39293 5.42945 5.44487 5.57345 5.61635 5.63107 5.68602 6.09499 6.38434 6.46477 7.13071 7.18014 7.82414 8.36371 9.19523 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.002912 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.532832 B = 9613.637774 C =10452.082269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.384 6.384 3 C 0.086 3.914 4 H 0.117 0.883 5 C 0.499 3.501 6 O -0.580 6.580 7 N -0.603 5.603 8 C 0.064 3.936 9 C 0.155 3.845 10 C -0.120 4.120 11 C 0.143 3.857 12 N -0.608 5.608 13 C -0.262 4.262 14 H 0.072 0.928 15 C -0.053 4.053 16 N -0.939 5.939 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.265 1.265 21 C 0.182 3.818 22 C -0.124 4.124 23 C -0.092 4.092 24 C -0.108 4.108 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.106 4.106 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.002 0.998 39 H 0.065 0.935 40 H 0.250 0.750 41 H 0.062 0.938 42 H -0.016 1.016 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.060 0.940 53 H 0.054 0.946 54 H 0.023 0.977 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.414 -0.692 -16.592 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.302 6.302 3 C 0.025 3.975 4 H 0.135 0.865 5 C 0.288 3.712 6 O -0.460 6.460 7 N -0.336 5.336 8 C -0.077 4.077 9 C 0.052 3.948 10 C -0.160 4.160 11 C 0.017 3.983 12 N -0.331 5.331 13 C -0.392 4.392 14 H 0.090 0.910 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.799 3.201 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.189 1.189 21 C 0.056 3.944 22 C -0.163 4.163 23 C -0.111 4.111 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.020 0.980 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.003 0.997 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.079 0.921 53 H 0.073 0.927 54 H 0.042 0.958 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.988 -1.397 -16.321 27.419 hybrid contribution 1.269 0.231 0.725 1.480 sum -20.719 -1.166 -15.596 25.959 Atomic orbital electron populations 1.23176 0.79105 1.04101 1.01318 1.88017 1.21532 1.25945 1.94694 1.22127 0.94538 0.87449 0.93374 0.86509 1.21485 0.83665 0.82661 0.83436 1.90674 1.64467 1.36509 1.54312 1.48064 1.33472 1.07640 1.44415 1.22192 1.00697 0.85759 0.99062 1.20823 0.85637 0.99108 0.89280 1.22211 0.98002 1.00141 0.95628 1.21000 0.86553 0.96683 0.94086 1.44321 1.26537 1.36253 1.26026 1.19552 0.89303 0.98333 1.32012 0.90992 1.25910 0.97378 0.99977 1.01495 1.70193 1.08165 1.28391 1.51770 0.85216 0.77933 0.79846 0.77064 1.21357 1.22033 1.18938 1.20507 0.94520 0.93144 0.86266 1.22249 0.95426 1.00686 0.97983 1.21604 0.97599 0.99738 0.92146 1.21602 0.96432 1.02749 0.93733 1.21516 0.98785 0.98473 0.96494 1.21525 0.96422 0.99478 0.97993 1.21520 0.98186 1.01452 0.94406 1.21357 0.97405 0.98989 0.96573 0.93523 0.91220 0.88811 0.90983 0.88422 0.89942 0.92491 0.91209 0.90325 0.97953 0.91678 0.94123 0.91976 0.99745 0.90964 0.92869 0.88770 0.91602 0.89591 0.91472 0.90342 0.91271 0.92248 0.92080 0.92724 0.95830 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.39 113.37 1.18 1.45 16 2 O -0.38 -9.31 8.64 -130.09 -1.12 -10.43 16 3 C 0.09 1.83 1.59 29.85 0.05 1.87 16 4 H 0.12 1.63 6.31 -2.39 -0.02 1.62 16 5 C 0.50 15.47 6.04 87.66 0.53 16.00 16 6 O -0.58 -24.54 15.86 15.85 0.25 -24.29 16 7 N -0.60 -16.95 2.76 -821.85 -2.27 -19.22 16 8 C 0.06 1.15 8.31 127.77 1.06 2.21 16 9 C 0.16 5.59 2.48 45.12 0.11 5.70 16 10 C -0.12 -4.09 5.35 30.78 0.16 -3.93 16 11 C 0.14 6.11 6.50 86.36 0.56 6.67 16 12 N -0.61 -31.00 2.99 -699.10 -2.09 -33.09 16 13 C -0.26 -14.34 9.59 84.03 0.81 -13.53 16 14 H 0.07 3.77 7.87 -2.91 -0.02 3.74 16 15 C -0.05 -2.94 4.97 84.86 0.42 -2.52 16 16 N -0.94 -56.46 11.11 21.65 0.24 -56.22 16 17 Si 0.97 44.54 29.58 68.60 2.03 46.57 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 C 0.18 9.15 5.29 86.36 0.46 9.60 16 22 C -0.12 -4.79 5.34 30.67 0.16 -4.63 16 23 C -0.09 -1.64 1.90 -10.79 -0.02 -1.66 16 24 C -0.11 -1.25 4.53 30.59 0.14 -1.12 16 25 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 26 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 27 C -0.12 -2.26 5.92 30.58 0.18 -2.08 16 28 C -0.11 -2.50 4.82 30.58 0.15 -2.35 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.64 6.70 -2.38 -0.02 0.63 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.12 6.76 -2.39 -0.02 1.10 16 33 H 0.10 1.07 6.42 -2.39 -0.02 1.05 16 34 H 0.08 1.50 6.46 -2.39 -0.02 1.48 16 35 H 0.06 2.51 6.91 -2.39 -0.02 2.49 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.44 6.73 -2.38 -0.02 2.42 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.06 3.47 6.04 -2.38 -0.01 3.46 16 42 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.07 2.60 7.72 -2.39 -0.02 2.58 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.09 1.55 5.67 -2.39 -0.01 1.54 16 46 H 0.07 0.84 6.73 -2.39 -0.02 0.82 16 47 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.02 0.72 7.40 -2.39 -0.02 0.70 16 55 H 0.06 1.52 7.54 -2.39 -0.02 1.50 16 Total: -1.00 -75.12 404.49 4.19 -70.93 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.85 Total: 16.59 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.31 Total: 9.16 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.12 Total: -108.53 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.87 Total: -34.72 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.12 4.19 -70.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316936770.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.929 kcal (2) G-P(sol) polarization free energy of solvation -75.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds