Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99797 * 2 1 4 4 C 1.52999 * 109.46605 * 209.99922 * 3 2 1 5 5 C 1.53003 * 109.46732 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47200 * 60.00153 * 5 4 3 7 7 C 1.50700 * 109.47310 * 60.00075 * 6 5 4 8 8 O 1.21281 * 119.99855 * 354.39401 * 7 6 5 9 9 N 1.34777 * 120.00048 * 174.40445 * 7 6 5 10 10 C 1.46927 * 120.63237 * 4.47234 * 9 7 6 11 11 C 1.53195 * 108.89320 * 233.67985 * 10 9 7 12 12 C 1.53033 * 109.31095 * 305.29185 * 11 10 9 13 13 C 1.53038 * 109.54249 * 61.37029 * 12 11 10 14 14 H 1.09003 * 109.49944 * 58.57931 * 13 12 11 15 15 C 1.52989 * 109.50228 * 178.64817 * 13 12 11 16 16 N 1.46503 * 109.47270 * 294.99523 * 15 13 12 17 17 C 1.46500 * 119.99400 * 89.99877 * 16 15 13 18 18 C 1.36929 * 120.00030 * 270.00219 * 16 15 13 19 19 H 1.08002 * 120.00026 * 145.72971 * 18 16 15 20 20 C 1.38815 * 120.00357 * 325.72092 * 18 16 15 21 21 N 1.31616 * 119.99864 * 153.88374 * 20 18 16 22 22 Si 1.86796 * 119.99816 * 333.89230 * 20 18 16 23 23 H 1.48500 * 109.47356 * 95.31750 * 22 20 18 24 24 H 1.48500 * 109.46795 * 215.31962 * 22 20 18 25 25 H 1.48499 * 109.47244 * 335.31901 * 22 20 18 26 26 C 1.47207 * 120.81277 * 184.61700 * 9 7 6 27 27 C 1.52999 * 109.47153 * 299.99589 * 6 5 4 28 28 C 1.53000 * 109.46799 * 90.00242 * 3 2 1 29 29 H 1.08992 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46962 * 300.00220 * 1 2 3 31 31 H 1.08994 * 109.46849 * 59.99812 * 1 2 3 32 32 H 1.08989 * 109.47028 * 329.99873 * 3 2 1 33 33 H 1.09000 * 109.47190 * 60.00102 * 4 3 2 34 34 H 1.09003 * 109.47315 * 299.99641 * 4 3 2 35 35 H 1.08996 * 109.47020 * 299.99531 * 5 4 3 36 36 H 1.09008 * 109.46987 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47383 * 179.97438 * 6 5 4 38 38 H 1.08995 * 109.58494 * 113.81775 * 10 9 7 39 39 H 1.09003 * 109.58458 * 353.53975 * 10 9 7 40 40 H 1.09000 * 109.49821 * 65.24493 * 11 10 9 41 41 H 1.08999 * 109.49359 * 185.34038 * 11 10 9 42 42 H 1.09013 * 109.45849 * 181.38689 * 12 11 10 43 43 H 1.08992 * 109.46500 * 301.35854 * 12 11 10 44 44 H 1.09001 * 109.47207 * 54.99957 * 15 13 12 45 45 H 1.09007 * 109.47274 * 174.99577 * 15 13 12 46 46 H 1.09000 * 109.47059 * 95.27778 * 17 16 15 47 47 H 1.08998 * 109.47024 * 215.26940 * 17 16 15 48 48 H 1.08999 * 109.47423 * 335.27176 * 17 16 15 49 49 H 0.97002 * 119.99762 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.53470 * 6.53867 * 26 9 7 51 51 H 1.09002 * 109.67760 * 246.22424 * 26 9 7 52 52 H 1.09005 * 109.47369 * 179.97438 * 27 6 5 53 53 H 1.08989 * 109.47388 * 300.00584 * 27 6 5 54 54 H 1.08995 * 109.47058 * 299.99214 * 28 3 2 55 55 H 1.08997 * 109.47549 * 60.00355 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9815 2.6608 -0.7207 6 6 4.1890 3.1262 0.7219 7 6 5.1086 2.1664 1.4320 8 8 5.4728 1.1519 0.8760 9 7 5.5261 2.4352 2.6849 10 6 5.0173 3.6087 3.4080 11 6 6.2051 4.4418 3.8999 12 6 7.1382 3.5540 4.7263 13 6 7.6741 2.4193 3.8502 14 1 8.2030 2.8390 2.9945 15 6 8.6330 1.5520 4.6680 16 7 9.8092 2.3420 5.0404 17 6 9.8153 3.1001 6.2940 18 6 10.9027 2.3719 4.2167 19 1 11.4934 3.2724 4.1359 20 6 11.2520 1.2448 3.4856 21 7 11.9230 1.3721 2.3605 22 14 10.7696 -0.4525 4.0985 23 1 9.4997 -0.8699 3.4518 24 1 11.8404 -1.4240 3.7596 25 1 10.5853 -0.4130 5.5715 26 6 6.5029 1.5633 3.3577 27 6 2.8404 3.1685 1.4432 28 6 2.2177 1.7713 1.4425 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.3450 1.9993 -0.5138 33 1 3.2111 0.9313 -1.7489 34 1 4.0242 0.5693 -0.2074 35 1 3.3164 3.3550 -1.2343 36 1 4.9426 2.6307 -1.2342 37 1 4.6330 4.1217 0.7223 38 1 4.4216 3.2826 4.2605 39 1 4.4006 4.2103 2.7401 40 1 6.7478 4.8425 3.0437 41 1 5.8422 5.2630 4.5180 42 1 7.9717 4.1502 5.0982 43 1 6.5883 3.1337 5.5682 44 1 8.1289 1.2037 5.5695 45 1 8.9452 0.6943 4.0720 46 1 10.2941 2.5082 7.0741 47 1 10.3665 4.0299 6.1536 48 1 8.7901 3.3262 6.5869 49 1 12.1669 0.5845 1.8495 50 1 6.8680 0.8145 2.6547 51 1 6.0300 1.0684 4.2060 52 1 2.9883 3.4995 2.4711 53 1 2.1753 3.8626 0.9296 54 1 1.2569 1.8015 1.9563 55 1 2.8830 1.0775 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317037949.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = -83.795668 kcal Electronic energy + Delta-G solvation = -32049.391633 eV Core-core repulsion = 28085.940295 eV Total energy + Delta-G solvation = -3963.451338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92432 -39.91397 -38.91702 -37.33630 -36.94767 -34.36736 -33.37865 -32.56451 -31.66107 -31.14562 -28.44483 -27.63573 -27.15482 -26.49163 -23.97104 -23.77930 -23.35553 -22.69814 -21.93545 -20.95684 -19.63482 -18.67800 -17.97044 -17.48971 -17.34229 -17.11600 -16.62662 -16.37437 -16.05609 -15.77188 -15.49057 -15.32449 -15.08232 -15.01064 -14.68981 -14.59505 -14.45575 -14.22163 -13.87341 -13.81070 -13.63109 -13.32627 -13.30865 -13.15884 -12.88919 -12.87774 -12.66399 -12.56044 -12.32684 -12.24006 -12.02818 -11.90824 -11.83929 -11.75338 -11.62418 -11.51590 -11.42984 -11.31197 -11.14020 -10.62034 -10.41936 -10.30598 -9.56771 -8.80323 -8.25870 -5.55133 1.25784 1.33709 1.44637 1.67716 2.03749 2.37744 2.85163 2.97696 3.42863 3.48144 3.67422 3.76152 3.85360 3.95984 4.04878 4.07070 4.14415 4.19219 4.24865 4.34039 4.36007 4.43159 4.48855 4.50032 4.52718 4.54769 4.57610 4.60382 4.72266 4.74077 4.77830 4.82837 4.84288 4.87183 4.88583 4.93954 5.03102 5.05209 5.07115 5.12681 5.19583 5.20380 5.24314 5.29581 5.31293 5.48156 5.49741 5.57277 5.62539 5.89604 6.11049 6.36458 6.51757 6.95922 7.26938 7.62906 8.02794 8.94265 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.003170 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.405431 B = 8831.873233 C = 9594.673994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.093 3.907 4 C -0.136 4.136 5 C -0.091 4.091 6 C -0.105 4.105 7 C 0.507 3.493 8 O -0.585 6.585 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.130 4.130 12 C -0.104 4.104 13 C -0.103 4.103 14 H 0.030 0.970 15 C 0.139 3.861 16 N -0.620 5.620 17 C 0.121 3.879 18 C -0.254 4.254 19 H 0.044 0.956 20 C -0.021 4.021 21 N -0.945 5.945 22 Si 0.933 3.067 23 H -0.284 1.284 24 H -0.308 1.308 25 H -0.255 1.255 26 C 0.122 3.878 27 C -0.109 4.109 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.022 0.978 46 H 0.011 0.989 47 H 0.034 0.966 48 H 0.076 0.924 49 H 0.260 0.740 50 H 0.044 0.956 51 H 0.082 0.918 52 H 0.098 0.902 53 H 0.111 0.889 54 H 0.083 0.917 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.093 8.682 1.252 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.036 3.964 4 C -0.174 4.174 5 C -0.129 4.129 6 C -0.126 4.126 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.341 5.341 10 C -0.023 4.023 11 C -0.168 4.168 12 C -0.142 4.142 13 C -0.125 4.125 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.344 5.344 17 C -0.023 4.023 18 C -0.384 4.384 19 H 0.062 0.938 20 C -0.217 4.217 21 N -0.589 5.589 22 Si 0.763 3.237 23 H -0.212 1.212 24 H -0.237 1.237 25 H -0.179 1.179 26 C -0.002 4.002 27 C -0.146 4.146 28 C -0.177 4.177 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.040 0.960 46 H 0.029 0.971 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.100 0.900 52 H 0.116 0.884 53 H 0.129 0.871 54 H 0.102 0.898 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -28.713 7.943 0.904 29.805 hybrid contribution 1.004 -1.383 -0.357 1.746 sum -27.710 6.560 0.547 28.481 Atomic orbital electron populations 1.22948 0.79740 1.03428 1.00978 1.87932 1.21382 1.29379 1.95234 1.22222 0.94366 0.84097 0.95735 1.21847 0.96183 0.99024 1.00337 1.21290 1.01075 0.96064 0.94457 1.21484 0.96237 0.98947 0.95944 1.21476 0.80962 0.86898 0.80954 1.90613 1.59321 1.30003 1.66658 1.48311 1.42910 1.28026 1.14829 1.22329 0.96377 0.85723 0.97889 1.21935 0.96262 0.98555 1.00062 1.21546 0.99045 0.95853 0.97719 1.21838 0.94467 0.97649 0.98564 0.95095 1.21209 0.87357 0.92902 0.97208 1.44127 1.12048 1.57219 1.21035 1.21299 1.00608 0.94465 0.85898 1.18668 1.05504 0.95557 1.18623 0.93816 1.25939 0.98133 1.01136 0.96518 1.70032 1.44871 1.30240 1.13782 0.86022 0.75833 0.81707 0.80155 1.21196 1.23701 1.17923 1.21456 0.89436 0.92722 0.96585 1.21804 0.93414 0.96868 1.02474 1.22007 1.01503 0.97285 0.96944 0.89393 0.92909 0.92783 0.89802 0.92304 0.91849 0.87768 0.93086 0.86075 0.88996 0.86299 0.93499 0.87434 0.91872 0.90224 0.91061 0.96043 0.97115 0.94678 0.90595 0.93078 0.93761 0.89978 0.88371 0.87084 0.89799 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.42 -10.02 10.35 -148.98 -1.54 -11.56 16 3 C 0.09 1.84 2.61 30.59 0.08 1.92 16 4 C -0.14 -3.44 5.28 30.59 0.16 -3.28 16 5 C -0.09 -1.85 5.12 30.59 0.16 -1.70 16 6 C -0.11 -1.98 2.18 -11.54 -0.03 -2.00 16 7 C 0.51 15.23 5.61 87.66 0.49 15.72 16 8 O -0.59 -23.90 12.92 -3.03 -0.04 -23.94 16 9 N -0.61 -16.70 2.98 -818.16 -2.44 -19.14 16 10 C 0.10 1.63 5.08 86.36 0.44 2.07 16 11 C -0.13 -2.53 6.08 30.67 0.19 -2.35 16 12 C -0.10 -2.75 4.22 30.62 0.13 -2.62 16 13 C -0.10 -3.81 2.55 -10.72 -0.03 -3.84 16 14 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 15 C 0.14 5.88 4.03 86.38 0.35 6.23 16 16 N -0.62 -29.11 2.35 -726.95 -1.71 -30.82 16 17 C 0.12 4.48 9.59 127.77 1.23 5.70 16 18 C -0.25 -14.73 9.94 84.04 0.83 -13.90 16 19 H 0.04 2.79 8.06 -2.91 -0.02 2.76 16 20 C -0.02 -1.27 5.26 84.86 0.45 -0.82 16 21 N -0.94 -61.84 13.97 21.65 0.30 -61.54 16 22 Si 0.93 48.95 25.17 68.60 1.73 50.67 16 23 H -0.28 -14.76 6.61 99.48 0.66 -14.10 16 24 H -0.31 -16.34 7.11 99.48 0.71 -15.64 16 25 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.12 4.17 5.72 86.31 0.49 4.66 16 27 C -0.11 -1.29 5.00 30.58 0.15 -1.14 16 28 C -0.14 -2.46 5.32 30.58 0.16 -2.30 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.08 1.17 7.79 -2.39 -0.02 1.15 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 2.22 5.31 -2.39 -0.01 2.21 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.12 1.75 7.61 -2.39 -0.02 1.73 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.25 4.40 -2.39 -0.01 1.24 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.86 5.87 -2.38 -0.01 1.84 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 45 H 0.02 1.06 3.12 -2.38 -0.01 1.05 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 48 H 0.08 2.19 6.20 -2.39 -0.01 2.18 16 49 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 50 H 0.04 1.90 7.05 -2.39 -0.02 1.88 16 51 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.10 0.85 5.15 -2.38 -0.01 0.84 16 53 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.08 1.13 7.87 -2.39 -0.02 1.11 16 55 H 0.03 0.88 7.21 -2.39 -0.02 0.87 16 Total: -1.00 -82.96 396.76 3.59 -79.38 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.81 Total: 12.99 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.48 Total: 3.95 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -3.85 Total: -111.50 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.58 Total: -35.50 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.73 Total: 50.67 kcal Total: -82.96 3.59 -79.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317037949.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.417 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds