Wall clock time and date at job start Tue Mar 31 2020 22:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00489 * 2 1 4 4 C 1.52994 * 109.47524 * 90.00072 * 3 2 1 5 5 C 1.52997 * 109.47620 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47174 * 300.00160 * 5 4 3 7 7 C 1.50700 * 109.47122 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99904 * 332.23120 * 7 6 5 9 9 N 1.34772 * 120.00139 * 152.23466 * 7 6 5 10 10 C 1.46930 * 120.63215 * 4.78027 * 9 7 6 11 11 C 1.53620 * 108.54414 * 126.36242 * 10 9 7 12 12 C 1.53044 * 109.23885 * 54.86188 * 11 10 9 13 13 C 1.53040 * 109.53692 * 298.50471 * 12 11 10 14 14 H 1.08998 * 109.49362 * 301.41524 * 13 12 11 15 15 C 1.52996 * 109.49687 * 181.32211 * 13 12 11 16 16 N 1.46495 * 109.47476 * 65.15979 * 15 13 12 17 17 C 1.46494 * 120.00283 * 270.00052 * 16 15 13 18 18 C 1.36935 * 119.99938 * 90.00141 * 16 15 13 19 19 H 1.08003 * 120.00477 * 21.29247 * 18 16 15 20 20 C 1.38821 * 120.00295 * 201.29406 * 18 16 15 21 21 N 1.31619 * 119.99273 * 12.72249 * 20 18 16 22 22 Si 1.86792 * 120.00231 * 192.71838 * 20 18 16 23 23 H 1.48507 * 109.46969 * 60.00039 * 22 20 18 24 24 H 1.48498 * 109.47205 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47528 * 300.00487 * 22 20 18 26 26 C 1.46930 * 120.63412 * 185.05370 * 9 7 6 27 27 C 1.53004 * 109.47164 * 59.99807 * 6 5 4 28 28 C 1.52996 * 109.46922 * 299.99704 * 27 6 5 29 29 H 1.09001 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46971 * 300.00465 * 1 2 3 31 31 H 1.08999 * 109.47331 * 59.99866 * 1 2 3 32 32 H 1.09004 * 109.46990 * 329.99943 * 3 2 1 33 33 H 1.09004 * 109.47092 * 59.99933 * 4 3 2 34 34 H 1.09004 * 109.46628 * 300.00226 * 4 3 2 35 35 H 1.09000 * 109.47340 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.46926 * 60.00394 * 5 4 3 37 37 H 1.08995 * 109.47056 * 299.99539 * 6 5 4 38 38 H 1.09003 * 109.58433 * 246.20246 * 10 9 7 39 39 H 1.09002 * 109.58235 * 6.62242 * 10 9 7 40 40 H 1.08993 * 109.63750 * 294.86707 * 11 10 9 41 41 H 1.09003 * 109.45160 * 174.74063 * 11 10 9 42 42 H 1.09002 * 109.45377 * 178.48630 * 12 11 10 43 43 H 1.09000 * 109.46055 * 58.52820 * 12 11 10 44 44 H 1.09005 * 109.46972 * 185.16179 * 15 13 12 45 45 H 1.09007 * 109.46950 * 305.15819 * 15 13 12 46 46 H 1.08999 * 109.47315 * 95.35330 * 17 16 15 47 47 H 1.09002 * 109.47548 * 215.35294 * 17 16 15 48 48 H 1.09007 * 109.47252 * 335.35338 * 17 16 15 49 49 H 0.97000 * 119.99500 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.58478 * 353.37595 * 26 9 7 51 51 H 1.08995 * 109.58553 * 113.79752 * 26 9 7 52 52 H 1.09004 * 109.47293 * 60.00113 * 27 6 5 53 53 H 1.09004 * 109.46815 * 180.02562 * 27 6 5 54 54 H 1.09001 * 109.47075 * 179.97438 * 28 27 6 55 55 H 1.08991 * 109.47766 * 300.00217 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2178 1.7713 1.4424 5 6 2.8396 3.1692 1.4424 6 6 4.1881 3.1276 0.7210 7 6 4.8003 4.5046 0.7205 8 8 4.0876 5.4851 0.7612 9 7 6.1398 4.6466 0.6747 10 6 7.0120 3.4744 0.5198 11 6 7.9438 3.7137 -0.6779 12 6 8.6938 5.0326 -0.4778 13 6 7.6908 6.1866 -0.4103 14 1 7.1058 6.2142 -1.3296 15 6 8.4434 7.5081 -0.2433 16 7 9.2469 7.7673 -1.4404 17 6 10.6246 7.2754 -1.5187 18 6 8.7102 8.4695 -2.4864 19 1 7.8608 9.1163 -2.3235 20 6 9.2579 8.3500 -3.7564 21 7 10.1190 7.3884 -4.0138 22 14 8.7728 9.5537 -5.0999 23 1 9.1324 10.9327 -4.6824 24 1 9.4924 9.2130 -6.3533 25 1 7.3082 9.4729 -5.3317 26 6 6.7559 5.9759 0.7847 27 6 3.9806 2.6617 -0.7215 28 6 3.3589 1.2637 -0.7215 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.3450 1.9993 -0.5139 33 1 2.8830 1.0773 1.9563 34 1 1.2569 1.8014 1.9562 35 1 2.9870 3.5013 2.4701 36 1 2.1740 3.8630 0.9288 37 1 4.8537 2.4339 1.2347 38 1 7.6036 3.3370 1.4249 39 1 6.4040 2.5878 0.3401 40 1 7.3563 3.7647 -1.5946 41 1 8.6600 2.8951 -0.7498 42 1 9.3760 5.1927 -1.3128 43 1 9.2616 4.9901 0.4517 44 1 7.7279 8.3185 -0.1034 45 1 9.0972 7.4465 0.6268 46 1 10.6396 6.3182 -2.0398 47 1 11.2370 7.9947 -2.0625 48 1 11.0224 7.1473 -0.5119 49 1 10.5020 7.3051 -4.9011 50 1 5.9789 6.7404 0.7799 51 1 7.3270 6.0384 1.7110 52 1 3.3150 3.3554 -1.2353 53 1 4.9415 2.6316 -1.2354 54 1 3.2107 0.9320 -1.7492 55 1 4.0244 0.5700 -0.2078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317037950.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:49 Heat of formation + Delta-G solvation = -97.634592 kcal Electronic energy + Delta-G solvation = -31203.776107 eV Core-core repulsion = 27239.724668 eV Total energy + Delta-G solvation = -3964.051439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64810 -39.94879 -38.91299 -37.20221 -37.08597 -34.41280 -32.93909 -32.24046 -31.84939 -31.06454 -28.13644 -27.62290 -27.16949 -26.30785 -24.11948 -23.69965 -23.52651 -22.51229 -21.32670 -20.88551 -19.68793 -18.69956 -18.19864 -17.62278 -17.16673 -16.83119 -16.47954 -16.19628 -16.01277 -15.84219 -15.61327 -15.20504 -15.06958 -14.85391 -14.66715 -14.49721 -14.27363 -14.09431 -13.90833 -13.70467 -13.32208 -13.23426 -13.06295 -12.97980 -12.90468 -12.71278 -12.62209 -12.34226 -12.24312 -12.13823 -12.10766 -12.01622 -11.90094 -11.89265 -11.65043 -11.53507 -11.45712 -11.31840 -11.15640 -10.68186 -10.56406 -10.39726 -9.60214 -8.73697 -7.82049 -5.26982 1.43540 1.44760 1.51372 1.59179 2.03445 2.50425 2.78085 3.30701 3.46471 3.64270 3.67480 3.71712 3.88144 4.02418 4.05306 4.08999 4.15498 4.21735 4.26633 4.33463 4.39191 4.44057 4.48243 4.52534 4.54506 4.57309 4.60102 4.68667 4.70756 4.76897 4.83521 4.87535 4.88717 4.89976 4.94427 4.97771 5.00271 5.06037 5.13782 5.16054 5.24847 5.27893 5.31649 5.37044 5.38169 5.50981 5.59029 5.61721 5.66567 5.85038 6.28505 6.34258 6.47166 7.17447 7.18443 7.91173 8.32368 9.20378 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002511 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.701237 B =11147.828348 C =11684.935714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.084 3.916 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.098 4.098 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.128 4.128 12 C -0.106 4.106 13 C -0.104 4.104 14 H 0.025 0.975 15 C 0.155 3.845 16 N -0.613 5.613 17 C 0.181 3.819 18 C -0.259 4.259 19 H 0.061 0.939 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.124 3.876 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.041 0.959 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.014 0.986 47 H 0.009 0.991 48 H 0.030 0.970 49 H 0.247 0.753 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.052 0.948 53 H 0.078 0.922 54 H 0.074 0.926 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 -18.095 13.471 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.027 3.973 4 C -0.166 4.166 5 C -0.133 4.133 6 C -0.119 4.119 7 C 0.300 3.700 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.014 4.014 11 C -0.166 4.166 12 C -0.144 4.144 13 C -0.126 4.126 14 H 0.044 0.956 15 C 0.028 3.972 16 N -0.336 5.336 17 C 0.037 3.963 18 C -0.390 4.390 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.001 3.999 27 C -0.141 4.141 28 C -0.143 4.143 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.032 0.968 47 H 0.028 0.972 48 H 0.048 0.952 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.106 0.894 52 H 0.071 0.929 53 H 0.097 0.903 54 H 0.092 0.908 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.979 -17.770 13.356 25.741 hybrid contribution -0.333 1.405 -1.434 2.035 sum -13.312 -16.365 11.922 24.231 Atomic orbital electron populations 1.22946 0.80054 1.03691 1.00509 1.87862 1.20908 1.28195 1.95203 1.22222 0.95109 0.84121 0.95857 1.21946 1.01931 0.95790 0.96969 1.21278 0.94416 0.97129 1.00446 1.21422 0.98771 0.92524 0.99203 1.21315 0.81730 0.92256 0.74670 1.90656 1.61555 1.42666 1.52273 1.48307 1.05782 1.08690 1.71162 1.22144 0.92894 0.87368 0.99013 1.21939 0.98830 0.98092 0.97709 1.21484 0.97392 0.93663 1.01820 1.21930 0.96442 0.97872 0.96372 0.95641 1.20948 0.93443 0.93902 0.88880 1.44104 1.10165 1.63689 1.15674 1.20590 0.83812 0.96959 0.94959 1.19409 1.13559 1.18087 0.87944 0.92125 1.25644 1.00540 0.99487 0.98939 1.70201 1.34509 1.32579 1.20705 0.85431 0.77472 0.79246 0.78834 1.20567 1.21744 1.20867 1.21519 0.95772 0.84420 0.98221 1.21430 1.01898 0.96799 0.93972 1.21501 0.95331 0.96024 1.01451 0.88421 0.93361 0.93787 0.92550 0.89906 0.90915 0.91216 0.92681 0.85969 0.88740 0.87243 0.94034 0.88707 0.93431 0.90876 0.94596 0.91679 0.96834 0.97213 0.95204 0.94396 0.91867 0.89447 0.92884 0.90338 0.90752 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.89 10.35 -148.98 -1.54 -8.43 16 3 C 0.08 1.34 2.61 30.60 0.08 1.42 16 4 C -0.13 -1.85 5.54 30.59 0.17 -1.69 16 5 C -0.09 -1.75 4.77 30.59 0.15 -1.60 16 6 C -0.10 -1.86 1.66 -11.54 -0.02 -1.88 16 7 C 0.51 14.31 6.77 87.66 0.59 14.90 16 8 O -0.59 -21.98 15.55 -3.05 -0.05 -22.02 16 9 N -0.61 -15.97 2.97 -818.06 -2.43 -18.39 16 10 C 0.11 2.02 6.10 86.51 0.53 2.54 16 11 C -0.13 -3.16 6.10 30.82 0.19 -2.97 16 12 C -0.11 -3.40 4.78 30.62 0.15 -3.25 16 13 C -0.10 -3.80 2.54 -10.72 -0.03 -3.83 16 14 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 15 C 0.15 6.24 5.18 86.38 0.45 6.69 16 16 N -0.61 -30.78 2.75 -726.94 -2.00 -32.78 16 17 C 0.18 8.81 7.85 127.77 1.00 9.81 16 18 C -0.26 -14.64 9.68 84.04 0.81 -13.83 16 19 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 20 C -0.05 -2.91 5.11 84.86 0.43 -2.48 16 21 N -0.93 -55.25 10.59 21.65 0.23 -55.02 16 22 Si 0.96 46.48 29.57 68.60 2.03 48.51 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.12 3.78 5.72 86.36 0.49 4.27 16 27 C -0.10 -1.90 4.99 30.59 0.15 -1.75 16 28 C -0.11 -1.60 5.57 30.60 0.17 -1.43 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.50 7.87 -2.38 -0.02 0.48 16 31 H 0.04 0.49 8.08 -2.39 -0.02 0.47 16 32 H 0.06 0.94 7.79 -2.39 -0.02 0.93 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.96 7.87 -2.38 -0.02 0.95 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.25 7.86 -2.38 -0.02 1.23 16 37 H 0.12 1.61 6.57 -2.39 -0.02 1.60 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.47 4.95 -2.39 -0.01 1.46 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.94 5.46 -2.39 -0.01 1.92 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.48 8.03 -2.38 -0.02 1.46 16 45 H 0.06 2.26 7.86 -2.38 -0.02 2.24 16 46 H 0.01 0.71 5.89 -2.39 -0.01 0.69 16 47 H 0.01 0.50 7.23 -2.39 -0.02 0.48 16 48 H 0.03 1.21 7.83 -2.38 -0.02 1.19 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 50 H 0.06 2.24 7.00 -2.38 -0.02 2.22 16 51 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.08 1.44 7.42 -2.38 -0.02 1.42 16 54 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 55 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.86 410.48 3.62 -68.24 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.84 Total: 13.44 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.55 Total: 6.46 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.20 Total: -106.19 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.59 Total: -30.45 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -71.86 3.62 -68.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317037950.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.397 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds