Wall clock time and date at job start Tue Mar 31 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99830 * 2 1 4 4 H 1.08003 * 120.00251 * 159.57837 * 3 2 1 5 5 C 1.38814 * 120.00242 * 339.85346 * 3 2 1 6 6 N 1.31627 * 119.99641 * 355.68408 * 5 3 2 7 7 Si 1.86791 * 120.00229 * 175.68250 * 5 3 2 8 8 H 1.48496 * 109.47298 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47291 * 120.00295 * 7 5 3 10 10 H 1.48502 * 109.47146 * 239.99965 * 7 5 3 11 11 C 1.46499 * 120.00039 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47209 * 270.00012 * 11 2 1 13 13 H 1.09004 * 109.49335 * 305.06622 * 12 11 2 14 14 C 1.53035 * 109.49849 * 65.16077 * 12 11 2 15 15 C 1.53040 * 109.54079 * 181.31913 * 14 12 11 16 16 C 1.53200 * 109.31234 * 298.63541 * 15 14 12 17 17 N 1.46930 * 108.77099 * 54.63142 * 16 15 14 18 18 C 1.34784 * 120.62477 * 126.41591 * 17 16 15 19 19 O 1.21284 * 119.99679 * 179.97438 * 18 17 16 20 20 C 1.50693 * 120.00355 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.47365 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47188 * 180.02562 * 21 20 18 23 23 H 1.09004 * 109.48266 * 305.02412 * 22 21 20 24 24 C 1.53096 * 109.47850 * 185.00186 * 22 21 20 25 25 C 1.53185 * 109.15923 * 182.40983 * 24 22 21 26 26 C 1.53180 * 109.03850 * 56.97789 * 25 24 22 27 27 C 1.53092 * 109.16409 * 303.02000 * 26 25 24 28 28 O 1.42898 * 109.48199 * 65.05651 * 22 21 20 29 29 C 1.46915 * 118.74323 * 306.39330 * 17 16 15 30 30 H 1.08999 * 109.46886 * 84.24318 * 1 2 3 31 31 H 1.09006 * 109.46637 * 204.23783 * 1 2 3 32 32 H 1.08994 * 109.47154 * 324.24183 * 1 2 3 33 33 H 0.97001 * 119.99619 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47324 * 30.00006 * 11 2 1 35 35 H 1.09004 * 109.47072 * 150.00198 * 11 2 1 36 36 H 1.09000 * 109.46178 * 301.34195 * 14 12 11 37 37 H 1.09002 * 109.45943 * 61.30061 * 14 12 11 38 38 H 1.09000 * 109.49899 * 178.68422 * 15 14 12 39 39 H 1.08998 * 109.49925 * 58.58153 * 15 14 12 40 40 H 1.08999 * 109.58359 * 294.84976 * 16 15 14 41 41 H 1.08998 * 109.70539 * 174.48804 * 16 15 14 42 42 H 1.09006 * 109.47149 * 300.00345 * 20 18 17 43 43 H 1.09005 * 109.47114 * 59.99998 * 20 18 17 44 44 H 1.08997 * 109.46815 * 299.99805 * 21 20 18 45 45 H 1.09001 * 109.47123 * 60.00407 * 21 20 18 46 46 H 1.08997 * 109.51930 * 302.31137 * 24 22 21 47 47 H 1.08998 * 109.52410 * 62.44220 * 24 22 21 48 48 H 1.09004 * 109.53858 * 176.84473 * 25 24 22 49 49 H 1.09003 * 109.54138 * 297.11020 * 25 24 22 50 50 H 1.09004 * 109.51909 * 62.92361 * 26 25 24 51 51 H 1.08995 * 109.51970 * 183.04945 * 26 25 24 52 52 H 1.08999 * 109.48022 * 177.58977 * 27 26 25 53 53 H 1.09002 * 109.47737 * 297.62960 * 27 26 25 54 54 H 1.09002 * 109.58704 * 293.82161 * 29 17 16 55 55 H 1.09007 * 109.59089 * 173.39495 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1788 1.2154 0.3264 5 6 1.5193 2.3513 -0.4140 6 7 0.2918 2.3033 -0.8866 7 14 2.4131 3.9876 -0.3005 8 1 3.7706 3.7722 0.2615 9 1 2.5267 4.5847 -1.6554 10 1 1.6522 4.9070 0.5833 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 2.9633 -0.9137 1.9818 14 6 1.1183 -2.0186 2.1252 15 6 1.3700 -2.4295 3.5777 16 6 2.2301 -3.6970 3.6040 17 7 3.4521 -3.4553 2.8247 18 6 4.6665 -3.6749 3.3664 19 8 5.6678 -3.4721 2.7127 20 6 4.7804 -4.1725 4.7843 21 6 6.2569 -4.3367 5.1502 22 6 6.3724 -4.8424 6.5895 23 1 5.8315 -4.1702 7.2556 24 6 7.8473 -4.8881 6.9978 25 6 7.9587 -5.4519 8.4177 26 6 7.3009 -6.8346 8.4593 27 6 5.8472 -6.7138 7.9946 28 8 5.8137 -6.1545 6.6799 29 6 3.3250 -2.9703 1.4438 30 1 -0.3633 0.1031 -1.0225 31 1 -0.3633 -0.9372 0.4219 32 1 -0.3633 0.8339 0.6005 33 1 -0.1488 3.1177 -1.1756 34 1 1.6085 -2.0282 -0.5147 35 1 3.1500 -1.1381 -0.5143 36 1 0.4859 -1.1311 2.1032 37 1 0.6198 -2.8325 1.5987 38 1 0.4177 -2.6258 4.0705 39 1 1.8906 -1.6258 4.0982 40 1 1.6741 -4.5250 3.1642 41 1 2.4950 -3.9401 4.6329 42 1 4.3168 -3.4536 5.4600 43 1 4.2744 -5.1338 4.8737 44 1 6.7208 -5.0553 4.4746 45 1 6.7624 -3.3751 5.0609 46 1 8.3966 -5.5282 6.3075 47 1 8.2640 -3.8812 6.9709 48 1 9.0095 -5.5396 8.6937 49 1 7.4513 -4.7856 9.1154 50 1 7.8392 -7.5141 7.7985 51 1 7.3276 -7.2202 9.4784 52 1 5.3865 -7.7016 7.9813 53 1 5.2994 -6.0661 8.6791 54 1 2.8583 -3.7391 0.8279 55 1 4.3122 -2.7314 1.0480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317043632.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:02 Heat of formation + Delta-G solvation = -100.598689 kcal Electronic energy + Delta-G solvation = -30368.355560 eV Core-core repulsion = 26404.175588 eV Total energy + Delta-G solvation = -3964.179972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30396 -40.29934 -38.98158 -37.18513 -35.02840 -34.51195 -34.37065 -32.92467 -32.12486 -30.91389 -28.18258 -27.60336 -26.92148 -25.75380 -24.64566 -23.80795 -22.75977 -22.29682 -21.23453 -21.02932 -19.71106 -18.68968 -18.14272 -17.49327 -17.14570 -16.86986 -16.54233 -16.41162 -15.79687 -15.58408 -15.55028 -15.34999 -15.12516 -14.94154 -14.59001 -14.49056 -14.43852 -14.27340 -13.70746 -13.64369 -13.56882 -13.27171 -13.00995 -12.91464 -12.85734 -12.76057 -12.51102 -12.29499 -12.16194 -12.11431 -12.03414 -11.99881 -11.83550 -11.82360 -11.64377 -11.56153 -11.50401 -11.17224 -11.15898 -10.78250 -10.61073 -10.31050 -9.59966 -8.75241 -7.81103 -5.28107 1.42684 1.43783 1.54128 1.65654 2.05714 2.49282 2.87110 3.31146 3.49712 3.68469 3.74825 3.86085 3.94247 3.98062 4.03383 4.05917 4.10257 4.16363 4.27614 4.32250 4.37273 4.43025 4.43825 4.53956 4.60598 4.63266 4.67688 4.70791 4.77785 4.83959 4.87241 4.88676 4.91557 4.95074 4.98572 5.00720 5.01557 5.10388 5.15528 5.20135 5.23793 5.27770 5.29423 5.42015 5.42916 5.51816 5.57943 5.60645 5.63602 5.81288 6.33492 6.36633 6.48798 7.17747 7.20807 7.90938 8.31270 9.20681 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.002094 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.839371 B =13368.596926 C =14074.404987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.618 5.618 3 C -0.252 4.252 4 H 0.063 0.937 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.272 1.272 9 H -0.291 1.291 10 H -0.289 1.289 11 C 0.156 3.844 12 C -0.104 4.104 13 H 0.036 0.964 14 C -0.107 4.107 15 C -0.128 4.128 16 C 0.107 3.893 17 N -0.610 5.610 18 C 0.504 3.496 19 O -0.594 6.594 20 C -0.124 4.124 21 C -0.093 4.093 22 C 0.095 3.905 23 H 0.072 0.928 24 C -0.153 4.153 25 C -0.122 4.122 26 C -0.156 4.156 27 C 0.055 3.945 28 O -0.397 6.397 29 C 0.124 3.876 30 H -0.006 1.006 31 H 0.034 0.966 32 H 0.021 0.979 33 H 0.246 0.754 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.088 0.912 52 H 0.102 0.898 53 H 0.060 0.940 54 H 0.081 0.919 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -21.018 22.179 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.341 5.341 3 C -0.383 4.383 4 H 0.080 0.920 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.796 3.204 8 H -0.197 1.197 9 H -0.218 1.218 10 H -0.216 1.216 11 C 0.029 3.971 12 C -0.126 4.126 13 H 0.055 0.945 14 C -0.145 4.145 15 C -0.166 4.166 16 C -0.014 4.014 17 N -0.342 5.342 18 C 0.295 3.705 19 O -0.475 6.475 20 C -0.164 4.164 21 C -0.131 4.131 22 C 0.038 3.962 23 H 0.090 0.910 24 C -0.191 4.191 25 C -0.160 4.160 26 C -0.194 4.194 27 C -0.022 4.022 28 O -0.317 6.317 29 C 0.001 3.999 30 H 0.012 0.988 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.106 0.894 52 H 0.120 0.880 53 H 0.078 0.922 54 H 0.099 0.901 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.080 -20.893 21.622 31.134 hybrid contribution 0.534 1.607 -0.417 1.744 sum 8.614 -19.287 21.206 29.931 Atomic orbital electron populations 1.20619 0.82244 0.95988 0.97164 1.44088 1.02329 1.01307 1.86400 1.19501 0.96304 0.86757 1.35718 0.91959 1.25741 0.97777 1.01546 1.00097 1.70282 1.13481 1.26837 1.48372 0.85185 0.78092 0.80174 0.76928 1.19716 1.21780 1.21575 1.20822 0.95239 0.87116 0.93899 1.21925 0.96590 0.95566 0.98552 0.94516 1.21523 0.96010 1.00999 0.95957 1.21897 1.00945 0.97449 0.96336 1.22023 0.84291 0.97743 0.97348 1.48300 1.06813 1.64892 1.14229 1.21459 0.82184 0.76563 0.90338 1.90664 1.37483 1.54500 1.64853 1.21647 0.99376 1.04228 0.91118 1.21309 0.95361 1.01428 0.94999 1.22094 0.93560 0.84512 0.96040 0.90993 1.22211 0.96710 1.02336 0.97833 1.21607 1.01716 0.96665 0.95978 1.22195 0.96871 0.97627 1.02703 1.22733 0.96142 0.99526 0.83752 1.87914 1.81682 1.31509 1.30549 1.21446 0.99927 0.95549 0.83005 0.98802 0.94721 0.95999 0.94394 0.92626 0.94834 0.93052 0.91100 0.88359 0.93146 0.89383 0.87038 0.86941 0.86638 0.92409 0.90737 0.92140 0.90398 0.90955 0.91010 0.92021 0.89358 0.87967 0.92169 0.90097 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 7.83 127.77 1.00 10.18 16 2 N -0.62 -31.48 2.76 -726.92 -2.01 -33.48 16 3 C -0.25 -14.35 9.72 84.03 0.82 -13.53 16 4 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 5 C -0.06 -3.33 5.28 84.86 0.45 -2.88 16 6 N -0.94 -56.70 10.12 21.65 0.22 -56.49 16 7 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 8 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 C 0.16 6.42 5.14 86.38 0.44 6.86 16 12 C -0.10 -3.62 2.54 -10.72 -0.03 -3.65 16 13 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.11 -3.13 4.22 30.62 0.13 -3.00 16 15 C -0.13 -2.74 6.08 30.67 0.19 -2.55 16 16 C 0.11 1.88 6.34 86.36 0.55 2.42 16 17 N -0.61 -15.60 2.97 -818.89 -2.43 -18.04 16 18 C 0.50 13.88 7.70 87.65 0.67 14.56 16 19 O -0.59 -21.83 15.40 -3.04 -0.05 -21.87 16 20 C -0.12 -2.27 3.94 29.85 0.12 -2.15 16 21 C -0.09 -1.82 4.21 30.59 0.13 -1.69 16 22 C 0.10 1.44 2.64 30.63 0.08 1.52 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 C -0.15 -2.11 5.42 30.69 0.17 -1.95 16 25 C -0.12 -1.26 6.03 30.72 0.19 -1.08 16 26 C -0.16 -1.51 6.14 30.68 0.19 -1.33 16 27 C 0.05 0.59 6.84 72.01 0.49 1.08 16 28 O -0.40 -6.50 9.94 -148.98 -1.48 -7.99 16 29 C 0.12 3.76 5.72 86.36 0.49 4.25 16 30 H -0.01 -0.35 7.46 -2.39 -0.02 -0.37 16 31 H 0.03 1.43 6.22 -2.38 -0.01 1.41 16 32 H 0.02 1.18 6.92 -2.39 -0.02 1.17 16 33 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 35 H 0.03 1.44 8.04 -2.38 -0.02 1.42 16 36 H 0.05 1.81 5.88 -2.39 -0.01 1.80 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.30 5.93 -2.39 -0.01 1.29 16 42 H 0.11 1.57 7.70 -2.38 -0.02 1.55 16 43 H 0.12 1.77 7.62 -2.38 -0.02 1.75 16 44 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 45 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 54 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 55 H 0.06 2.24 7.01 -2.38 -0.02 2.22 16 Total: -1.00 -73.07 413.19 3.18 -69.89 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.83 Total: 12.10 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.07 Total: 7.07 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.22 Total: -108.01 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.53 Total: -29.86 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.07 3.18 -69.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317043632.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.705 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds