Wall clock time and date at job start Tue Mar 31 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00054 * 2 1 4 4 H 1.07994 * 120.00178 * 201.69057 * 3 2 1 5 5 C 1.38813 * 119.99830 * 21.69692 * 3 2 1 6 6 N 1.31620 * 120.00459 * 11.56327 * 5 3 2 7 7 Si 1.86803 * 119.99796 * 191.57149 * 5 3 2 8 8 H 1.48500 * 109.47532 * 59.99669 * 7 5 3 9 9 H 1.48497 * 109.47126 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47249 * 299.99565 * 7 5 3 11 11 C 1.46498 * 119.99813 * 180.02562 * 2 1 3 12 12 C 1.53009 * 109.46946 * 269.99575 * 11 2 1 13 13 H 1.09004 * 109.49573 * 304.93731 * 12 11 2 14 14 C 1.53044 * 109.49579 * 65.00183 * 12 11 2 15 15 C 1.53040 * 109.53711 * 181.31830 * 14 12 11 16 16 C 1.53187 * 109.31223 * 298.63536 * 15 14 12 17 17 N 1.46925 * 108.77794 * 54.63465 * 16 15 14 18 18 C 1.34771 * 120.63307 * 126.36929 * 17 16 15 19 19 O 1.21280 * 120.00428 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00003 * 0.02562 * 18 17 16 21 21 C 1.53004 * 109.47459 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47204 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.49061 * 54.97693 * 22 21 20 24 24 C 1.53097 * 109.48029 * 174.99814 * 22 21 20 25 25 C 1.53175 * 109.21549 * 177.56110 * 24 22 21 26 26 C 1.53188 * 109.03215 * 303.11759 * 25 24 22 27 27 C 1.53093 * 109.21414 * 56.88576 * 26 25 24 28 28 O 1.42895 * 109.41519 * 302.42363 * 27 26 25 29 29 C 1.46922 * 118.73757 * 306.64554 * 17 16 15 30 30 H 1.08997 * 109.47128 * 275.29392 * 1 2 3 31 31 H 1.08998 * 109.47064 * 35.29139 * 1 2 3 32 32 H 1.08998 * 109.47213 * 155.29383 * 1 2 3 33 33 H 0.96997 * 119.99977 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.47606 * 150.00128 * 11 2 1 35 35 H 1.08995 * 109.47398 * 29.99480 * 11 2 1 36 36 H 1.09001 * 109.46013 * 61.29764 * 14 12 11 37 37 H 1.09005 * 109.45832 * 301.33395 * 14 12 11 38 38 H 1.08997 * 109.49643 * 178.67841 * 15 14 12 39 39 H 1.08997 * 109.49632 * 58.58602 * 15 14 12 40 40 H 1.09005 * 109.58580 * 294.84972 * 16 15 14 41 41 H 1.08996 * 109.59014 * 174.42400 * 16 15 14 42 42 H 1.09004 * 109.47288 * 59.99839 * 20 18 17 43 43 H 1.09007 * 109.47102 * 300.00123 * 20 18 17 44 44 H 1.09004 * 109.46935 * 59.99705 * 21 20 18 45 45 H 1.08997 * 109.47132 * 300.00254 * 21 20 18 46 46 H 1.09000 * 109.52233 * 297.50040 * 24 22 21 47 47 H 1.09001 * 109.51599 * 57.62721 * 24 22 21 48 48 H 1.09009 * 109.53958 * 62.92115 * 25 24 22 49 49 H 1.08996 * 109.54692 * 183.18563 * 25 24 22 50 50 H 1.08991 * 109.46853 * 296.97647 * 26 25 24 51 51 H 1.09005 * 109.52128 * 176.82036 * 26 25 24 52 52 H 1.09000 * 109.47828 * 182.43528 * 27 26 25 53 53 H 1.09002 * 109.48666 * 62.41253 * 27 26 25 54 54 H 1.09004 * 109.59281 * 173.14352 * 29 17 16 55 55 H 1.09007 * 109.59129 * 293.56739 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2190 -0.3457 5 6 1.5294 2.3454 0.4444 6 7 0.3756 2.2749 1.0739 7 14 2.3320 4.0061 0.1490 8 1 2.4962 4.2240 -1.3107 9 1 1.4747 5.0781 0.7156 10 1 3.6630 4.0367 0.8068 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9653 -0.9146 1.9812 14 6 1.1179 -2.0146 2.1266 15 6 1.3697 -2.4255 3.5791 16 6 2.2265 -3.6951 3.6053 17 7 3.4484 -3.4572 2.8250 18 6 4.6627 -3.6789 3.3660 19 8 5.6640 -3.4783 2.7116 20 6 4.7764 -4.1761 4.7840 21 6 6.2528 -4.3443 5.1488 22 6 6.3682 -4.8484 6.5887 23 1 5.7856 -5.7627 6.7017 24 6 7.8367 -5.1355 6.9129 25 6 7.9525 -5.5814 8.3737 26 6 7.3580 -4.4956 9.2761 27 6 5.9081 -4.2333 8.8606 28 8 5.8701 -3.8522 7.4839 29 6 3.3216 -2.9672 1.4457 30 1 -0.3633 0.0948 1.0232 31 1 -0.3633 0.8388 -0.5937 32 1 -0.3633 -0.9336 -0.4295 33 1 -0.0580 3.0852 1.3841 34 1 3.1499 -1.1383 -0.5143 35 1 1.6084 -2.0282 -0.5146 36 1 0.6168 -2.8275 1.6009 37 1 0.4880 -1.1253 2.1047 38 1 0.4174 -2.6188 4.0728 39 1 1.8929 -1.6228 4.0987 40 1 1.6679 -4.5219 3.1665 41 1 2.4914 -3.9360 4.6347 42 1 4.2687 -5.1364 4.8742 43 1 4.3146 -3.4561 5.4597 44 1 6.7610 -3.3842 5.0585 45 1 6.7143 -5.0644 4.4732 46 1 8.2059 -5.9266 6.2602 47 1 8.4268 -4.2319 6.7600 48 1 7.4039 -6.5127 8.5153 49 1 9.0018 -5.7329 8.6267 50 1 7.9383 -3.5789 9.1721 51 1 7.3850 -4.8291 10.3135 52 1 5.4944 -3.4310 9.4715 53 1 5.3193 -5.1395 9.0033 54 1 4.3090 -2.7279 1.0506 55 1 2.8542 -3.7334 0.8271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317043643.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:10 Heat of formation + Delta-G solvation = -102.056762 kcal Electronic energy + Delta-G solvation = -30578.396500 eV Core-core repulsion = 26614.153301 eV Total energy + Delta-G solvation = -3964.243199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30205 -40.30329 -38.96545 -37.17119 -35.02681 -34.51991 -34.32398 -32.94238 -32.16135 -30.92764 -28.14607 -27.59969 -26.90963 -25.76159 -24.65505 -23.80281 -22.77537 -22.30534 -21.23037 -20.98190 -19.71545 -18.70183 -18.16350 -17.49578 -17.06037 -16.80245 -16.56241 -16.47182 -15.86212 -15.61295 -15.52947 -15.37917 -15.12384 -14.95191 -14.64636 -14.47683 -14.40353 -14.22366 -13.74356 -13.62107 -13.56389 -13.20966 -13.03587 -12.97846 -12.80276 -12.69612 -12.55847 -12.25133 -12.15690 -12.11005 -12.08826 -11.98879 -11.90490 -11.83511 -11.58312 -11.55953 -11.49169 -11.17304 -11.14811 -10.77990 -10.59153 -10.31303 -9.59398 -8.73547 -7.82074 -5.27652 1.43383 1.44694 1.51259 1.64822 2.07671 2.50274 2.87858 3.30740 3.49604 3.70323 3.75040 3.86750 3.94040 3.98400 4.03812 4.05962 4.11437 4.15901 4.28521 4.33220 4.36333 4.44106 4.45949 4.52845 4.60179 4.63410 4.67812 4.70571 4.77279 4.84722 4.87832 4.88656 4.90182 4.94422 4.95693 4.99857 5.02309 5.10433 5.14965 5.20023 5.24825 5.28834 5.29741 5.38089 5.42286 5.51115 5.59111 5.62112 5.66176 5.85322 6.34394 6.37974 6.49000 7.17721 7.20692 7.90996 8.32232 9.20354 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002305 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.292399 B =12145.009141 C =12771.839821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.614 5.614 3 C -0.260 4.260 4 H 0.061 0.939 5 C -0.052 4.052 6 N -0.934 5.934 7 Si 0.962 3.038 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.155 3.845 12 C -0.106 4.106 13 H 0.023 0.977 14 C -0.106 4.106 15 C -0.130 4.130 16 C 0.110 3.890 17 N -0.611 5.611 18 C 0.504 3.496 19 O -0.593 6.593 20 C -0.125 4.125 21 C -0.093 4.093 22 C 0.094 3.906 23 H 0.079 0.921 24 C -0.153 4.153 25 C -0.120 4.120 26 C -0.157 4.157 27 C 0.054 3.946 28 O -0.403 6.403 29 C 0.125 3.875 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.029 0.971 33 H 0.247 0.753 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.089 0.911 52 H 0.096 0.904 53 H 0.064 0.936 54 H 0.062 0.938 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -22.546 16.282 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.337 5.337 3 C -0.390 4.390 4 H 0.079 0.921 5 C -0.247 4.247 6 N -0.581 5.581 7 Si 0.791 3.209 8 H -0.205 1.205 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.029 3.971 12 C -0.128 4.128 13 H 0.042 0.958 14 C -0.143 4.143 15 C -0.168 4.168 16 C -0.011 4.011 17 N -0.343 5.343 18 C 0.294 3.706 19 O -0.475 6.475 20 C -0.164 4.164 21 C -0.131 4.131 22 C 0.037 3.963 23 H 0.097 0.903 24 C -0.191 4.191 25 C -0.158 4.158 26 C -0.195 4.195 27 C -0.022 4.022 28 O -0.322 6.322 29 C 0.002 3.998 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.107 0.893 52 H 0.114 0.886 53 H 0.082 0.918 54 H 0.081 0.919 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.634 -22.143 15.918 28.319 hybrid contribution 0.524 1.673 -0.172 1.761 sum 8.157 -20.471 15.746 27.083 Atomic orbital electron populations 1.20592 0.82335 0.95523 0.97836 1.44107 1.02277 1.01329 1.85966 1.19418 0.97456 0.86860 1.35309 0.92103 1.25671 0.98507 1.01377 0.99097 1.70198 1.18614 1.27152 1.42118 0.85417 0.77498 0.80120 0.77863 1.20460 1.21707 1.20916 1.20944 0.95449 0.87152 0.93572 1.21874 0.96373 0.95329 0.99216 0.95807 1.21482 0.96216 1.00968 0.95655 1.21876 1.00796 0.97431 0.96664 1.22001 0.84301 0.97497 0.97308 1.48316 1.06774 1.64734 1.14430 1.21453 0.82193 0.76720 0.90216 1.90653 1.37400 1.54631 1.64793 1.21655 0.99456 1.04466 0.90871 1.21325 0.95222 1.02103 0.94435 1.22150 0.94320 0.91358 0.88483 0.90323 1.22213 0.96645 1.02083 0.98114 1.21599 1.01967 0.98586 0.93627 1.22201 0.96950 0.99518 1.00814 1.22725 0.96230 1.01470 0.81758 1.87943 1.84301 1.42971 1.17031 1.21404 0.99898 0.95544 0.82997 0.96882 0.97133 0.95212 0.94387 0.94554 0.91605 0.90781 0.93453 0.88679 0.94364 0.88659 0.87256 0.85773 0.87975 0.93368 0.89761 0.89800 0.92643 0.90584 0.90869 0.92440 0.89269 0.88563 0.91760 0.91913 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 7.85 127.77 1.00 9.94 16 2 N -0.61 -31.25 2.75 -726.95 -2.00 -33.25 16 3 C -0.26 -14.85 9.68 84.03 0.81 -14.04 16 4 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 5 C -0.05 -2.98 5.13 84.86 0.44 -2.54 16 6 N -0.93 -55.90 10.55 21.65 0.23 -55.68 16 7 Si 0.96 47.01 29.57 68.60 2.03 49.04 16 8 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 9 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 C 0.16 6.39 5.19 86.38 0.45 6.83 16 12 C -0.11 -3.98 2.53 -10.86 -0.03 -4.01 16 13 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 14 C -0.11 -3.50 4.78 30.62 0.15 -3.35 16 15 C -0.13 -3.38 6.08 30.67 0.19 -3.19 16 16 C 0.11 2.19 6.34 86.36 0.55 2.74 16 17 N -0.61 -16.77 2.98 -819.76 -2.44 -19.21 16 18 C 0.50 14.71 7.70 87.66 0.67 15.38 16 19 O -0.59 -22.58 15.40 -3.03 -0.05 -22.62 16 20 C -0.13 -2.49 3.94 29.85 0.12 -2.37 16 21 C -0.09 -1.93 4.21 30.59 0.13 -1.80 16 22 C 0.09 1.51 2.64 30.62 0.08 1.60 16 23 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 24 C -0.15 -2.20 5.42 30.69 0.17 -2.03 16 25 C -0.12 -1.31 6.03 30.72 0.19 -1.12 16 26 C -0.16 -1.81 6.13 30.69 0.19 -1.62 16 27 C 0.05 0.72 6.84 72.01 0.49 1.21 16 28 O -0.40 -7.80 9.94 -148.98 -1.48 -9.28 16 29 C 0.13 3.94 5.69 86.22 0.49 4.43 16 30 H 0.01 0.69 5.88 -2.39 -0.01 0.68 16 31 H 0.01 0.54 7.22 -2.39 -0.02 0.53 16 32 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.04 1.52 8.03 -2.39 -0.02 1.51 16 35 H 0.07 2.32 7.86 -2.39 -0.02 2.31 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.97 5.46 -2.38 -0.01 1.96 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.11 1.57 5.93 -2.39 -0.01 1.55 16 42 H 0.12 1.58 7.94 -2.39 -0.02 1.57 16 43 H 0.10 2.05 7.37 -2.38 -0.02 2.03 16 44 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 46 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 53 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.06 2.29 7.01 -2.38 -0.02 2.27 16 55 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -73.88 413.72 3.19 -70.68 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.83 Total: 14.25 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 6.08 Total: 6.06 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.21 Total: -108.13 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.53 Total: -31.91 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -73.88 3.19 -70.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317043643.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.376 kcal (2) G-P(sol) polarization free energy of solvation -73.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds