Wall clock time and date at job start Tue Mar 31 2020 22:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 120.00247 * 2 1 4 4 H 1.08006 * 120.00262 * 202.14350 * 3 2 1 5 5 C 1.38820 * 120.00028 * 22.14526 * 3 2 1 6 6 N 1.31614 * 119.99827 * 11.55489 * 5 3 2 7 7 Si 1.86795 * 119.99864 * 191.55584 * 5 3 2 8 8 H 1.48507 * 109.47345 * 60.00181 * 7 5 3 9 9 H 1.48505 * 109.47012 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47500 * 299.99810 * 7 5 3 11 11 C 1.46501 * 120.00003 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47473 * 270.00441 * 11 2 1 13 13 H 1.09003 * 109.49861 * 55.05674 * 12 11 2 14 14 C 1.53044 * 109.49294 * 295.00046 * 12 11 2 15 15 C 1.53047 * 109.53516 * 178.65002 * 14 12 11 16 16 C 1.53194 * 109.31193 * 61.36419 * 15 14 12 17 17 N 1.46928 * 108.77552 * 305.36411 * 16 15 14 18 18 C 1.34774 * 120.62910 * 233.58843 * 17 16 15 19 19 O 1.21285 * 119.99808 * 179.97438 * 18 17 16 20 20 C 1.50700 * 120.00164 * 359.97438 * 18 17 16 21 21 C 1.52995 * 109.47155 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.47237 * 179.97438 * 21 20 18 23 23 H 1.09000 * 109.47721 * 55.02582 * 22 21 20 24 24 C 1.53093 * 109.48904 * 175.05031 * 22 21 20 25 25 C 1.53182 * 109.15786 * 177.59706 * 24 22 21 26 26 C 1.53174 * 109.04830 * 303.02889 * 25 24 22 27 27 C 1.53089 * 109.16308 * 56.96526 * 26 25 24 28 28 O 1.42899 * 109.48003 * 295.00351 * 22 21 20 29 29 C 1.46926 * 118.74028 * 53.85965 * 17 16 15 30 30 H 1.09001 * 109.47398 * 274.23151 * 1 2 3 31 31 H 1.09004 * 109.47345 * 34.22923 * 1 2 3 32 32 H 1.08993 * 109.47203 * 154.22638 * 1 2 3 33 33 H 0.97003 * 120.00192 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47451 * 150.00200 * 11 2 1 35 35 H 1.09005 * 109.46800 * 29.99901 * 11 2 1 36 36 H 1.08999 * 109.46480 * 58.63096 * 14 12 11 37 37 H 1.09002 * 109.44807 * 298.65887 * 14 12 11 38 38 H 1.08991 * 109.49589 * 301.41285 * 15 14 12 39 39 H 1.08997 * 109.51955 * 181.32872 * 15 14 12 40 40 H 1.08996 * 109.58363 * 185.57659 * 16 15 14 41 41 H 1.09000 * 109.58456 * 65.15008 * 16 15 14 42 42 H 1.09003 * 109.47007 * 59.99992 * 20 18 17 43 43 H 1.09001 * 109.47189 * 300.00096 * 20 18 17 44 44 H 1.09003 * 109.47176 * 60.00087 * 21 20 18 45 45 H 1.09001 * 109.47144 * 300.00115 * 21 20 18 46 46 H 1.08994 * 109.52584 * 297.50245 * 24 22 21 47 47 H 1.09000 * 109.52020 * 57.69477 * 24 22 21 48 48 H 1.08997 * 109.54305 * 62.89601 * 25 24 22 49 49 H 1.09008 * 109.53899 * 183.06720 * 25 24 22 50 50 H 1.09004 * 109.51185 * 297.06431 * 26 25 24 51 51 H 1.09004 * 109.53358 * 176.87716 * 26 25 24 52 52 H 1.09004 * 109.48004 * 182.42411 * 27 26 25 53 53 H 1.08998 * 109.48320 * 62.39760 * 27 26 25 54 54 H 1.09001 * 109.58360 * 65.92441 * 29 17 16 55 55 H 1.08998 * 109.58794 * 186.35018 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1700 1.2203 -0.3526 5 6 1.5324 2.3437 0.4532 6 7 0.3829 2.2707 1.0900 7 14 2.3334 4.0055 0.1592 8 1 2.4879 4.2292 -1.3008 9 1 1.4799 5.0753 0.7357 10 1 3.6687 4.0332 0.8083 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 1.5062 -1.7553 1.9824 14 6 3.3824 -0.7055 2.1276 15 6 3.6112 -1.1277 3.5808 16 6 4.2820 -2.5046 3.6087 17 7 3.4653 -3.4445 2.8287 18 6 3.0502 -4.6067 3.3703 19 8 2.3761 -5.3739 2.7162 20 6 3.4237 -4.9530 4.7886 21 6 2.8312 -6.3155 5.1539 22 6 3.2110 -6.6673 6.5937 23 1 2.8954 -5.8640 7.2595 24 6 2.5175 -7.9700 7.0010 25 6 2.9498 -8.3468 8.4214 26 6 4.4765 -8.4625 8.4653 27 6 5.0942 -7.1409 8.0012 28 8 4.6272 -6.8340 6.6859 29 6 3.1148 -3.0960 1.4451 30 1 -0.3634 0.0758 1.0249 31 1 -0.3634 0.8497 -0.5781 32 1 -0.3633 -0.9254 -0.4468 33 1 -0.0486 3.0798 1.4063 34 1 3.1499 -1.1387 -0.5133 35 1 1.6083 -2.0286 -0.5129 36 1 2.9276 0.2848 2.1045 37 1 4.3373 -0.6789 1.6026 38 1 2.6541 -1.1787 4.0997 39 1 4.2545 -0.3995 4.0747 40 1 4.3573 -2.8535 4.6386 41 1 5.2776 -2.4350 3.1706 42 1 3.0308 -4.1927 5.4638 43 1 4.5092 -4.9932 4.8790 44 1 3.2245 -7.0755 4.4787 45 1 1.7457 -6.2757 5.0634 46 1 1.4368 -7.8314 6.9739 47 1 2.8012 -8.7648 6.3110 48 1 2.6225 -7.5757 9.1188 49 1 2.5023 -9.3017 8.6975 50 1 4.7998 -9.2674 7.8050 51 1 4.7967 -8.6759 9.4851 52 1 6.1804 -7.2316 7.9892 53 1 4.8035 -6.3437 8.6853 54 1 4.0172 -3.0735 0.8342 55 1 2.4197 -3.8352 1.0469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317043644.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:14 Heat of formation + Delta-G solvation = -102.137607 kcal Electronic energy + Delta-G solvation = -30519.224101 eV Core-core repulsion = 26554.977397 eV Total energy + Delta-G solvation = -3964.246705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28440 -40.29300 -38.91771 -37.16202 -35.01504 -34.51007 -34.24070 -32.99876 -32.09263 -30.93072 -28.03569 -27.57286 -26.92632 -25.75990 -24.66235 -23.75131 -22.84273 -22.32800 -21.20166 -20.87235 -19.76375 -18.65308 -18.14176 -17.49260 -17.03642 -16.79465 -16.54281 -16.39908 -15.79989 -15.55060 -15.49874 -15.36109 -15.04595 -14.89312 -14.74961 -14.53546 -14.39306 -14.14514 -13.79215 -13.60735 -13.55208 -13.18897 -13.00928 -12.98820 -12.80039 -12.67670 -12.54989 -12.29361 -12.15929 -12.07849 -12.02097 -11.92142 -11.87527 -11.82919 -11.67862 -11.55771 -11.47777 -11.16557 -11.12556 -10.74004 -10.53336 -10.30963 -9.57823 -8.73378 -7.76425 -5.22666 1.48053 1.50531 1.56231 1.65774 2.06951 2.54747 2.87257 3.37141 3.49370 3.69376 3.75585 3.88649 3.94701 3.98472 4.05899 4.07179 4.13297 4.17779 4.28552 4.33288 4.37528 4.44486 4.45799 4.54793 4.60084 4.63324 4.70311 4.75596 4.77986 4.84043 4.85772 4.88522 4.91142 4.95398 4.96610 5.00648 5.01576 5.10650 5.15588 5.20345 5.27508 5.29271 5.30402 5.35704 5.42320 5.55974 5.63312 5.68711 5.73170 5.77187 6.36576 6.37561 6.49277 7.19519 7.20774 7.91669 8.37563 9.27435 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.002083 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.058473 B =13441.394301 C =13822.996743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.614 5.614 3 C -0.239 4.239 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.962 3.038 8 H -0.282 1.282 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.154 3.846 12 C -0.101 4.101 13 H 0.031 0.969 14 C -0.103 4.103 15 C -0.128 4.128 16 C 0.111 3.889 17 N -0.610 5.610 18 C 0.506 3.494 19 O -0.592 6.592 20 C -0.126 4.126 21 C -0.092 4.092 22 C 0.094 3.906 23 H 0.070 0.930 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.156 4.156 27 C 0.054 3.946 28 O -0.397 6.397 29 C 0.124 3.876 30 H -0.001 1.001 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.088 0.912 52 H 0.102 0.898 53 H 0.059 0.941 54 H 0.080 0.920 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -19.148 16.584 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.337 5.337 3 C -0.369 4.369 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.226 1.226 10 H -0.198 1.198 11 C 0.027 3.973 12 C -0.123 4.123 13 H 0.049 0.951 14 C -0.141 4.141 15 C -0.166 4.166 16 C -0.010 4.010 17 N -0.342 5.342 18 C 0.296 3.704 19 O -0.473 6.473 20 C -0.165 4.165 21 C -0.130 4.130 22 C 0.037 3.963 23 H 0.088 0.912 24 C -0.190 4.190 25 C -0.160 4.160 26 C -0.193 4.193 27 C -0.022 4.022 28 O -0.317 6.317 29 C 0.000 4.000 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.106 0.894 52 H 0.120 0.880 53 H 0.077 0.923 54 H 0.098 0.902 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.679 -19.393 16.127 27.390 hybrid contribution -0.490 1.223 -0.124 1.323 sum 10.189 -18.170 16.003 26.269 Atomic orbital electron populations 1.20493 0.83245 0.95577 0.97233 1.44141 1.01811 1.01811 1.85910 1.19348 0.97692 0.85988 1.33915 0.91021 1.25701 0.98504 1.01465 0.99328 1.70238 1.19315 1.27080 1.42207 0.85417 0.77793 0.80057 0.77659 1.20864 1.22623 1.19826 1.20956 0.95899 0.86734 0.93670 1.21993 0.97345 0.93927 0.99079 0.95056 1.21381 0.98475 0.99071 0.95132 1.21880 1.00704 0.97200 0.96849 1.21965 0.93952 0.87849 0.97280 1.48302 1.52485 1.19220 1.14207 1.21404 0.78407 0.80284 0.90298 1.90648 1.41045 1.50796 1.64796 1.21652 1.04423 0.99221 0.91248 1.21304 1.00875 0.95818 0.94963 1.22105 0.81321 0.96794 0.96086 0.91185 1.22204 1.01137 0.97840 0.97818 1.21606 0.95879 1.02504 0.95999 1.22191 0.95959 0.98492 1.02701 1.22734 0.99814 0.95917 0.83740 1.87915 1.21979 1.91283 1.30497 1.21607 1.00032 0.95570 0.82754 0.98288 0.96220 0.96051 0.94634 0.92664 0.93478 0.92995 0.92149 0.93617 0.89370 0.87117 0.89536 0.87225 0.86775 0.92232 0.90607 0.90326 0.92001 0.91116 0.90849 0.91923 0.89370 0.88000 0.92299 0.90228 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.22 9.01 127.77 1.15 10.37 16 2 N -0.61 -30.65 2.80 -726.93 -2.04 -32.69 16 3 C -0.24 -12.70 7.58 84.04 0.64 -12.06 16 4 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.06 -3.07 5.13 84.86 0.43 -2.64 16 6 N -0.94 -55.57 10.58 21.65 0.23 -55.34 16 7 Si 0.96 44.61 29.57 68.60 2.03 46.64 16 8 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 C 0.15 6.22 5.22 86.38 0.45 6.67 16 12 C -0.10 -3.74 2.56 -10.57 -0.03 -3.77 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.10 -3.66 4.76 30.62 0.15 -3.51 16 15 C -0.13 -3.49 6.08 30.68 0.19 -3.30 16 16 C 0.11 2.34 6.34 86.36 0.55 2.89 16 17 N -0.61 -16.74 2.97 -818.07 -2.43 -19.17 16 18 C 0.51 14.41 7.70 87.66 0.67 15.09 16 19 O -0.59 -21.69 15.39 -3.04 -0.05 -21.73 16 20 C -0.13 -2.47 3.94 29.85 0.12 -2.35 16 21 C -0.09 -1.85 4.21 30.59 0.13 -1.72 16 22 C 0.09 1.50 2.64 30.63 0.08 1.58 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 C -0.15 -2.15 5.42 30.69 0.17 -1.99 16 25 C -0.12 -1.32 6.03 30.71 0.19 -1.14 16 26 C -0.16 -1.59 6.14 30.68 0.19 -1.41 16 27 C 0.05 0.63 6.84 72.01 0.49 1.12 16 28 O -0.40 -6.87 9.94 -148.98 -1.48 -8.35 16 29 C 0.12 3.86 5.75 86.51 0.50 4.35 16 30 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 31 H 0.02 1.06 7.18 -2.38 -0.02 1.05 16 32 H 0.02 0.95 7.84 -2.39 -0.02 0.93 16 33 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.06 2.10 8.03 -2.39 -0.02 2.09 16 35 H 0.05 1.79 7.86 -2.38 -0.02 1.77 16 36 H 0.05 2.38 6.26 -2.39 -0.01 2.36 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 1.66 5.93 -2.39 -0.01 1.65 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 1.75 7.69 -2.39 -0.02 1.73 16 43 H 0.11 1.93 7.62 -2.39 -0.02 1.91 16 44 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 45 H 0.08 1.63 8.10 -2.39 -0.02 1.62 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 52 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 54 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 55 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 Total: -1.00 -69.13 415.26 3.15 -65.99 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.82 Total: 16.47 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.06 Total: 8.19 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.23 Total: -107.20 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.53 Total: -30.08 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -69.13 3.15 -65.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317043644.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.151 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds