Wall clock time and date at job start Tue Mar 31 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99801 * 2 1 4 4 H 1.07998 * 120.00159 * 202.14877 * 3 2 1 5 5 C 1.38811 * 119.99806 * 22.14785 * 3 2 1 6 6 N 1.31628 * 120.00179 * 11.55616 * 5 3 2 7 7 Si 1.86805 * 119.99979 * 191.55277 * 5 3 2 8 8 H 1.48496 * 109.47204 * 60.00040 * 7 5 3 9 9 H 1.48497 * 109.47040 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46774 * 299.99869 * 7 5 3 11 11 C 1.46500 * 120.00162 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47171 * 269.99683 * 11 2 1 13 13 H 1.09008 * 109.52373 * 54.92002 * 12 11 2 14 14 C 1.53035 * 109.49944 * 294.83979 * 12 11 2 15 15 C 1.53037 * 109.54139 * 178.68257 * 14 12 11 16 16 C 1.52758 * 109.38424 * 61.23913 * 15 14 12 17 17 N 1.46931 * 109.00682 * 305.58979 * 16 15 14 18 18 C 1.34780 * 120.63049 * 233.58128 * 17 16 15 19 19 O 1.21275 * 119.99718 * 179.72169 * 18 17 16 20 20 C 1.50697 * 119.99928 * 359.72234 * 18 17 16 21 21 C 1.52996 * 109.46939 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.46935 * 180.02562 * 21 20 18 23 23 C 1.53181 * 109.53853 * 294.55126 * 22 21 20 24 24 C 1.53093 * 109.15875 * 183.15457 * 23 22 21 25 25 O 1.42905 * 109.41614 * 57.61138 * 24 23 22 26 26 C 1.42894 * 114.09893 * 298.84056 * 25 24 23 27 27 C 1.53096 * 109.41484 * 61.15636 * 26 25 24 28 28 C 1.46919 * 118.73698 * 53.30895 * 17 16 15 29 29 H 1.09003 * 109.47013 * 274.22478 * 1 2 3 30 30 H 1.08996 * 109.47523 * 34.22548 * 1 2 3 31 31 H 1.09006 * 109.46659 * 154.22834 * 1 2 3 32 32 H 0.96995 * 119.99754 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.46889 * 149.99601 * 11 2 1 34 34 H 1.08997 * 109.46944 * 29.99825 * 11 2 1 35 35 H 1.08997 * 109.46100 * 298.70480 * 14 12 11 36 36 H 1.09004 * 109.46036 * 58.66120 * 14 12 11 37 37 H 1.09002 * 109.50140 * 181.32231 * 15 14 12 38 38 H 1.09009 * 109.49821 * 301.37929 * 15 14 12 39 39 H 1.08998 * 109.51365 * 185.70932 * 16 15 14 40 40 H 1.08998 * 109.43105 * 65.42747 * 16 15 14 41 41 H 1.09007 * 109.47270 * 59.99948 * 20 18 17 42 42 H 1.09002 * 109.47193 * 300.00072 * 20 18 17 43 43 H 1.08993 * 109.47230 * 59.99788 * 21 20 18 44 44 H 1.09001 * 109.47254 * 299.99533 * 21 20 18 45 45 H 1.08996 * 109.62014 * 54.77621 * 22 21 20 46 46 H 1.08992 * 109.52730 * 303.05943 * 23 22 21 47 47 H 1.09001 * 109.51937 * 63.25482 * 23 22 21 48 48 H 1.09004 * 109.48456 * 297.62599 * 24 23 22 49 49 H 1.09008 * 109.48759 * 177.59792 * 24 23 22 50 50 H 1.09004 * 109.48376 * 301.17575 * 26 25 24 51 51 H 1.08998 * 109.49148 * 181.14587 * 26 25 24 52 52 H 1.09003 * 109.51974 * 182.48740 * 27 26 25 53 53 H 1.08996 * 109.52483 * 62.29923 * 27 26 25 54 54 H 1.08996 * 109.58972 * 66.42836 * 28 17 16 55 55 H 1.09004 * 109.58569 * 186.71183 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1699 1.2205 -0.3526 5 6 1.5324 2.3437 0.4532 6 7 0.3828 2.2705 1.0901 7 14 2.3332 4.0056 0.1593 8 1 2.4877 4.2294 -1.3005 9 1 1.4802 5.0751 0.7370 10 1 3.6685 4.0333 0.8085 11 6 2.1976 -1.2687 -0.0006 12 6 2.4527 -1.7110 1.4417 13 1 1.5069 -1.7547 1.9820 14 6 3.3859 -0.7094 2.1257 15 6 3.6154 -1.1330 3.5782 16 6 4.2783 -2.5090 3.6062 17 7 3.4631 -3.4490 2.8247 18 6 3.0452 -4.6102 3.3663 19 8 2.3685 -5.3754 2.7125 20 6 3.4187 -4.9579 4.7843 21 6 2.8217 -6.3182 5.1500 22 6 3.2005 -6.6709 6.5899 23 6 4.7166 -6.8660 6.6876 24 6 5.0771 -7.2952 8.1123 25 8 4.3703 -8.4930 8.4408 26 6 2.9481 -8.3577 8.4122 27 6 2.5020 -7.9712 6.9996 28 6 3.1071 -3.0961 1.4437 29 1 -0.3633 0.0757 1.0249 30 1 -0.3634 0.8497 -0.5780 31 1 -0.3633 -0.9255 -0.4468 32 1 -0.0484 3.0795 1.4071 33 1 3.1499 -1.1381 -0.5144 34 1 1.6085 -2.0281 -0.5147 35 1 4.3401 -0.6843 1.5996 36 1 2.9333 0.2821 2.1038 37 1 4.2613 -0.4066 4.0714 38 1 2.6588 -1.1816 4.0986 39 1 4.3507 -2.8573 4.6365 40 1 5.2751 -2.4402 3.1707 41 1 3.0284 -4.1967 5.4599 42 1 4.5042 -5.0011 4.8739 43 1 3.2116 -7.0796 4.4745 44 1 1.7363 -6.2746 5.0606 45 1 2.8926 -5.8658 7.2569 46 1 5.0308 -7.6372 5.9844 47 1 5.2205 -5.9288 6.4511 48 1 4.7994 -6.5060 8.8110 49 1 6.1500 -7.4769 8.1768 50 1 2.6424 -7.5824 9.1148 51 1 2.4870 -9.3047 8.6926 52 1 1.4220 -7.8244 6.9861 53 1 2.7714 -8.7646 6.3026 54 1 4.0064 -3.0761 0.8282 55 1 2.4088 -3.8330 1.0467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317044914.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:53 Heat of formation + Delta-G solvation = -103.379349 kcal Electronic energy + Delta-G solvation = -30508.473885 eV Core-core repulsion = 26544.173334 eV Total energy + Delta-G solvation = -3964.300551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31434 -40.28736 -38.96069 -37.18701 -36.35874 -34.36753 -33.02267 -32.47471 -31.98114 -31.52468 -28.08340 -27.66530 -26.98906 -25.69854 -24.44067 -23.84721 -23.04168 -22.48078 -20.97892 -20.84836 -19.79666 -18.66030 -18.12934 -17.09607 -17.00278 -16.87231 -16.68680 -16.54550 -15.89810 -15.71765 -15.53795 -15.43340 -14.99410 -14.96524 -14.80069 -14.70941 -14.30027 -14.13975 -13.79039 -13.61125 -13.28799 -13.13493 -13.08107 -12.99231 -12.84928 -12.71104 -12.56106 -12.32626 -12.21773 -12.12452 -12.04316 -11.92696 -11.88160 -11.73665 -11.69066 -11.48407 -11.23210 -11.14891 -11.11681 -10.74765 -10.54175 -10.39725 -9.58589 -8.74421 -7.77265 -5.23645 1.47538 1.50119 1.55861 1.65574 2.07225 2.54049 3.03232 3.36402 3.50112 3.68653 3.71343 3.80330 3.88796 3.99809 4.06778 4.12240 4.15686 4.24591 4.26387 4.33213 4.42069 4.45858 4.50687 4.52196 4.59962 4.64053 4.70810 4.74729 4.82653 4.82782 4.84354 4.84815 4.90125 4.91368 4.95406 4.97106 4.99813 5.09220 5.18772 5.21428 5.27165 5.29849 5.32821 5.34959 5.50920 5.55448 5.62559 5.67792 5.72075 5.76719 6.32563 6.36680 6.49891 7.18830 7.21118 7.90653 8.36582 9.26653 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002062 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.241268 B =13575.058358 C =13949.153798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.614 5.614 3 C -0.239 4.239 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.962 3.038 8 H -0.282 1.282 9 H -0.300 1.300 10 H -0.272 1.272 11 C 0.154 3.846 12 C -0.102 4.102 13 H 0.029 0.971 14 C -0.103 4.103 15 C -0.130 4.130 16 C 0.111 3.889 17 N -0.610 5.610 18 C 0.503 3.497 19 O -0.594 6.594 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.085 4.085 23 C -0.151 4.151 24 C 0.055 3.945 25 O -0.409 6.409 26 C 0.059 3.941 27 C -0.152 4.152 28 C 0.124 3.876 29 H -0.001 1.001 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.244 0.756 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.099 0.901 52 H 0.078 0.922 53 H 0.060 0.940 54 H 0.079 0.921 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.546 -17.469 15.012 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.369 4.369 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.589 5.589 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.226 1.226 10 H -0.198 1.198 11 C 0.027 3.973 12 C -0.124 4.124 13 H 0.048 0.952 14 C -0.141 4.141 15 C -0.168 4.168 16 C -0.011 4.011 17 N -0.342 5.342 18 C 0.294 3.706 19 O -0.475 6.475 20 C -0.170 4.170 21 C -0.129 4.129 22 C -0.103 4.103 23 C -0.188 4.188 24 C -0.021 4.021 25 O -0.328 6.328 26 C -0.018 4.018 27 C -0.190 4.190 28 C 0.000 4.000 29 H 0.017 0.983 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.112 0.888 48 H 0.079 0.921 49 H 0.120 0.880 50 H 0.078 0.922 51 H 0.117 0.883 52 H 0.096 0.904 53 H 0.079 0.921 54 H 0.098 0.902 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.199 -17.905 14.758 25.765 hybrid contribution -0.617 1.538 -0.530 1.740 sum 10.582 -16.366 14.228 24.130 Atomic orbital electron populations 1.20495 0.83273 0.95567 0.97225 1.44143 1.01795 1.01828 1.85925 1.19347 0.97699 0.85970 1.33930 0.90989 1.25705 0.98490 1.01474 0.99315 1.70243 1.19340 1.27094 1.42196 0.85415 0.77803 0.80035 0.77668 1.20855 1.22645 1.19783 1.20953 0.95898 0.86716 0.93698 1.21907 0.97360 0.94033 0.99066 0.95225 1.21375 0.98430 0.99030 0.95230 1.21815 1.00773 0.97419 0.96761 1.21895 0.94013 0.87749 0.97396 1.48321 1.52433 1.19267 1.14207 1.21503 0.78422 0.80268 0.90438 1.90656 1.40939 1.51041 1.64871 1.21795 1.04578 0.99621 0.91038 1.21274 1.00296 0.95311 0.95996 1.21198 0.95630 0.97702 0.95791 1.22308 0.95717 1.02966 0.97826 1.22749 0.97357 0.87021 0.94997 1.87897 1.18965 1.35730 1.90248 1.22669 0.80751 1.02624 0.95709 1.22236 1.01152 0.97788 0.97795 1.21495 1.00021 0.95446 0.83009 0.98300 0.96205 0.96087 0.94635 0.92624 0.93564 0.92094 0.93101 0.89263 0.93751 0.86743 0.89407 0.87073 0.86046 0.92747 0.92983 0.89738 0.92014 0.88777 0.92120 0.88032 0.92208 0.88314 0.90359 0.92100 0.90233 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 9.01 127.77 1.15 10.32 16 2 N -0.61 -30.45 2.80 -726.94 -2.04 -32.49 16 3 C -0.24 -12.61 7.59 84.03 0.64 -11.97 16 4 H 0.07 3.66 7.84 -2.91 -0.02 3.63 16 5 C -0.06 -3.05 5.13 84.86 0.43 -2.61 16 6 N -0.94 -55.33 10.58 21.65 0.23 -55.11 16 7 Si 0.96 44.28 29.57 68.60 2.03 46.31 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.15 6.15 5.22 86.38 0.45 6.60 16 12 C -0.10 -3.68 2.54 -10.72 -0.03 -3.71 16 13 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 14 C -0.10 -3.56 4.77 30.62 0.15 -3.42 16 15 C -0.13 -3.35 6.06 30.53 0.19 -3.16 16 16 C 0.11 2.10 6.31 86.22 0.54 2.64 16 17 N -0.61 -15.69 2.98 -819.76 -2.44 -18.14 16 18 C 0.50 13.39 7.70 87.66 0.67 14.06 16 19 O -0.59 -21.18 15.39 -3.01 -0.05 -21.23 16 20 C -0.13 -2.12 3.81 29.85 0.11 -2.00 16 21 C -0.09 -1.60 3.98 30.59 0.12 -1.48 16 22 C -0.08 -1.08 2.27 -10.67 -0.02 -1.11 16 23 C -0.15 -1.66 5.10 30.69 0.16 -1.50 16 24 C 0.06 0.63 6.84 72.01 0.49 1.12 16 25 O -0.41 -6.78 10.77 -148.98 -1.60 -8.39 16 26 C 0.06 0.75 6.84 72.01 0.49 1.25 16 27 C -0.15 -2.07 5.42 30.69 0.17 -1.90 16 28 C 0.12 3.74 5.72 86.36 0.49 4.23 16 29 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 30 H 0.02 1.07 7.18 -2.39 -0.02 1.05 16 31 H 0.02 0.93 7.84 -2.38 -0.02 0.91 16 32 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 34 H 0.05 1.75 7.86 -2.39 -0.02 1.73 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 2.29 6.27 -2.39 -0.01 2.28 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.11 1.36 5.93 -2.39 -0.01 1.34 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.43 7.68 -2.38 -0.02 1.42 16 42 H 0.12 1.27 6.47 -2.39 -0.02 1.26 16 43 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 44 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.09 0.68 6.75 -2.39 -0.02 0.66 16 48 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 53 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 55 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 Total: -1.00 -70.72 412.53 3.17 -67.56 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.83 Total: 14.12 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.21 Total: 7.36 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.25 Total: -105.73 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.65 Total: -29.61 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.72 3.17 -67.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317044914.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.824 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds