Wall clock time and date at job start Tue Mar 31 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99870 * 2 1 4 4 H 1.08000 * 120.00182 * 202.11052 * 3 2 1 5 5 C 1.38813 * 119.99889 * 22.11685 * 3 2 1 6 6 N 1.31615 * 120.00168 * 14.13479 * 5 3 2 7 7 Si 1.86806 * 119.99911 * 194.13428 * 5 3 2 8 8 H 1.48500 * 109.47075 * 59.99840 * 7 5 3 9 9 H 1.48498 * 109.46880 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46768 * 299.99930 * 7 5 3 11 11 C 1.46500 * 119.99950 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47112 * 90.00403 * 11 2 1 13 13 H 1.09002 * 109.52165 * 304.91767 * 12 11 2 14 14 C 1.53036 * 109.49920 * 64.99709 * 12 11 2 15 15 C 1.53040 * 109.53871 * 181.32040 * 14 12 11 16 16 C 1.53200 * 109.33654 * 298.61516 * 15 14 12 17 17 N 1.47001 * 108.73543 * 54.62514 * 16 15 14 18 18 C 1.34772 * 120.61620 * 126.38767 * 17 16 15 19 19 O 1.21280 * 120.00016 * 180.02562 * 18 17 16 20 20 C 1.50695 * 119.99870 * 0.02562 * 18 17 16 21 21 C 1.53002 * 109.47410 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47579 * 180.02562 * 21 20 18 23 23 C 1.53176 * 109.54199 * 294.55529 * 22 21 20 24 24 C 1.53095 * 109.16255 * 183.15294 * 23 22 21 25 25 O 1.42898 * 109.41613 * 57.60687 * 24 23 22 26 26 C 1.42904 * 114.09694 * 298.84291 * 25 24 23 27 27 C 1.53088 * 109.41832 * 61.16020 * 26 25 24 28 28 C 1.46932 * 118.75272 * 306.40659 * 17 16 15 29 29 H 1.08996 * 109.46886 * 275.12852 * 1 2 3 30 30 H 1.08998 * 109.46762 * 35.13153 * 1 2 3 31 31 H 1.08998 * 109.47033 * 155.12819 * 1 2 3 32 32 H 0.96998 * 120.00284 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47223 * 329.99712 * 11 2 1 34 34 H 1.09005 * 109.47161 * 209.99964 * 11 2 1 35 35 H 1.09004 * 109.46255 * 61.29723 * 14 12 11 36 36 H 1.09000 * 109.46310 * 301.33746 * 14 12 11 37 37 H 1.08999 * 109.49921 * 58.58291 * 15 14 12 38 38 H 1.08999 * 109.50206 * 178.65424 * 15 14 12 39 39 H 1.08996 * 109.58431 * 174.43705 * 16 15 14 40 40 H 1.08998 * 109.58822 * 294.86718 * 16 15 14 41 41 H 1.09005 * 109.47759 * 300.00055 * 20 18 17 42 42 H 1.08998 * 109.47604 * 60.00258 * 20 18 17 43 43 H 1.09011 * 109.46636 * 300.00152 * 21 20 18 44 44 H 1.08993 * 109.47299 * 59.99380 * 21 20 18 45 45 H 1.09008 * 109.54260 * 54.81894 * 22 21 20 46 46 H 1.09006 * 109.51931 * 303.05674 * 23 22 21 47 47 H 1.08996 * 109.52735 * 63.24275 * 23 22 21 48 48 H 1.08994 * 109.48067 * 297.62172 * 24 23 22 49 49 H 1.09005 * 109.48828 * 177.59550 * 24 23 22 50 50 H 1.08996 * 109.48069 * 301.17259 * 26 25 24 51 51 H 1.09006 * 109.49097 * 181.15066 * 26 25 24 52 52 H 1.09000 * 109.52804 * 182.48898 * 27 26 25 53 53 H 1.08996 * 109.57609 * 62.32529 * 27 26 25 54 54 H 1.09000 * 109.58822 * 293.82321 * 28 17 16 55 55 H 1.09000 * 109.58314 * 173.39365 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1701 1.2204 -0.3520 5 6 1.5322 2.3438 0.4526 6 7 0.4082 2.2674 1.1331 7 14 2.2965 4.0106 0.0958 8 1 2.3936 4.2064 -1.3730 9 1 1.4494 5.0795 0.6834 10 1 3.6543 4.0707 0.6941 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 1.5066 -1.7557 -1.9828 14 6 3.3826 -0.7053 -2.1276 15 6 3.6120 -1.1278 -3.5805 16 6 4.2837 -2.5044 -3.6085 17 7 3.4665 -3.4445 -2.8279 18 6 3.0512 -4.6066 -3.3695 19 8 2.3771 -5.3738 -2.7155 20 6 3.4246 -4.9527 -4.7879 21 6 2.8309 -6.3145 -5.1538 22 6 3.2105 -6.6663 -6.5935 23 6 2.5473 -5.6753 -7.5550 24 6 2.8682 -6.0816 -8.9957 25 8 2.4172 -7.4182 -9.2241 26 6 3.0383 -8.3947 -8.3858 27 6 2.7241 -8.0815 -6.9206 28 6 3.1107 -3.0931 -1.4463 29 1 -0.3633 0.0919 1.0235 30 1 -0.3633 0.8405 -0.5914 31 1 -0.3633 -0.9323 -0.4322 32 1 -0.0235 3.0765 1.4491 33 1 1.6085 -2.0286 0.5130 34 1 3.1500 -1.1386 0.5133 35 1 4.3373 -0.6780 -1.6023 36 1 2.9275 0.2849 -2.1050 37 1 2.6551 -1.1793 -4.0999 38 1 4.2552 -0.3992 -4.0741 39 1 4.3595 -2.8531 -4.6384 40 1 5.2791 -2.4343 -3.1700 41 1 3.0319 -4.1924 -5.4630 42 1 4.5101 -4.9931 -4.8784 43 1 3.2234 -7.0752 -4.4787 44 1 1.7455 -6.2738 -5.0634 45 1 4.2936 -6.6175 -6.7074 46 1 1.4677 -5.6889 -7.4045 47 1 2.9297 -4.6724 -7.3655 48 1 3.9448 -6.0287 -9.1571 49 1 2.3636 -5.4048 -9.6854 50 1 4.1171 -8.3722 -8.5392 51 1 2.6563 -9.3846 -8.6359 52 1 3.2332 -8.7993 -6.2774 53 1 1.6485 -8.1440 -6.7563 54 1 4.0105 -3.0710 -0.8315 55 1 2.4127 -3.8306 -1.0499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317044916.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:57 Heat of formation + Delta-G solvation = -103.771307 kcal Electronic energy + Delta-G solvation = -30420.024711 eV Core-core repulsion = 26455.707164 eV Total energy + Delta-G solvation = -3964.317547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31132 -40.28675 -38.97983 -37.17648 -36.35631 -34.41094 -32.99194 -32.47690 -31.97664 -31.51488 -28.10557 -27.68261 -27.01881 -25.69826 -24.44246 -23.85951 -23.04469 -22.48396 -20.95339 -20.87450 -19.80754 -18.64876 -18.08865 -17.13281 -16.99536 -16.96644 -16.71824 -16.54866 -15.80835 -15.72135 -15.47654 -15.37010 -15.13024 -14.96513 -14.88991 -14.64363 -14.26991 -14.13148 -13.79539 -13.62645 -13.32909 -13.20616 -13.11533 -12.97745 -12.79239 -12.64977 -12.57876 -12.32379 -12.23596 -12.15217 -12.11688 -11.97304 -11.89363 -11.73123 -11.65153 -11.40693 -11.22771 -11.15531 -11.12163 -10.76254 -10.57435 -10.39411 -9.58832 -8.73689 -7.78270 -5.25662 1.47498 1.49933 1.56124 1.66387 2.06271 2.53841 3.03640 3.34515 3.50742 3.67159 3.71789 3.80683 3.86881 3.99891 4.05776 4.12096 4.14897 4.24651 4.26921 4.31665 4.42224 4.44414 4.49929 4.52960 4.60082 4.63902 4.70603 4.73473 4.80128 4.82558 4.85045 4.85393 4.89479 4.92702 4.95379 4.96973 4.99631 5.09286 5.19375 5.21386 5.22691 5.27002 5.32832 5.35527 5.51671 5.57689 5.59236 5.64146 5.65765 5.72792 6.33298 6.35585 6.50144 7.17521 7.21836 7.90030 8.36419 9.25724 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.002046 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.340622 B =13678.840798 C =14091.391687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.245 4.245 4 H 0.082 0.918 5 C -0.064 4.064 6 N -0.945 5.945 7 Si 0.966 3.034 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.273 1.273 11 C 0.155 3.845 12 C -0.101 4.101 13 H 0.040 0.960 14 C -0.109 4.109 15 C -0.129 4.129 16 C 0.108 3.892 17 N -0.610 5.610 18 C 0.503 3.497 19 O -0.595 6.595 20 C -0.130 4.130 21 C -0.092 4.092 22 C -0.083 4.083 23 C -0.153 4.153 24 C 0.056 3.944 25 O -0.411 6.411 26 C 0.058 3.942 27 C -0.152 4.152 28 C 0.124 3.876 29 H 0.003 0.997 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.245 0.755 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.098 0.902 52 H 0.082 0.918 53 H 0.055 0.945 54 H 0.077 0.923 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.495 -17.767 -20.964 30.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.337 5.337 3 C -0.375 4.375 4 H 0.100 0.900 5 C -0.258 4.258 6 N -0.592 5.592 7 Si 0.794 3.206 8 H -0.203 1.203 9 H -0.228 1.228 10 H -0.199 1.199 11 C 0.028 3.972 12 C -0.123 4.123 13 H 0.059 0.941 14 C -0.146 4.146 15 C -0.167 4.167 16 C -0.013 4.013 17 N -0.342 5.342 18 C 0.293 3.707 19 O -0.476 6.476 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.101 4.101 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.330 6.330 26 C -0.018 4.018 27 C -0.190 4.190 28 C 0.000 4.000 29 H 0.021 0.979 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.116 0.884 50 H 0.082 0.918 51 H 0.116 0.884 52 H 0.101 0.899 53 H 0.074 0.926 54 H 0.095 0.905 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.921 -18.083 -20.686 29.951 hybrid contribution -0.418 1.291 0.880 1.617 sum 11.504 -16.793 -19.806 28.401 Atomic orbital electron populations 1.20476 0.83441 0.95324 0.97417 1.44081 1.01690 1.01826 1.86144 1.19530 0.98019 0.85922 1.34019 0.90050 1.25831 0.98881 1.01959 0.99119 1.70251 1.21277 1.27258 1.40432 0.85351 0.77636 0.79652 0.77920 1.20294 1.22760 1.19900 1.20838 0.95620 0.86734 0.93959 1.21895 0.97912 0.94181 0.98329 0.94113 1.21505 0.98589 0.98896 0.95631 1.21908 1.01199 0.97264 0.96347 1.22038 0.93936 0.87953 0.97419 1.48329 1.52466 1.19340 1.14082 1.21525 0.78406 0.80260 0.90461 1.90667 1.41088 1.50947 1.64907 1.21795 1.04586 0.99709 0.90878 1.21286 1.00192 0.95556 0.95953 1.21192 1.01096 0.94528 0.93273 1.22323 1.01081 1.00399 0.95269 1.22728 0.99947 0.83068 0.96279 1.87904 1.67043 1.17345 1.60749 1.22686 0.97829 0.92229 0.89045 1.22240 1.01756 0.97494 0.97513 1.21438 0.99934 0.95505 0.83094 0.97871 0.96617 0.96176 0.94599 0.94568 0.93165 0.92084 0.92621 0.92904 0.88817 0.86584 0.89618 0.86946 0.85880 0.92267 0.93606 0.89016 0.92652 0.88902 0.91694 0.88427 0.91824 0.88423 0.89922 0.92579 0.90519 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 8.98 127.77 1.15 10.36 16 2 N -0.61 -30.75 2.80 -726.93 -2.04 -32.79 16 3 C -0.24 -13.00 8.16 84.03 0.69 -12.32 16 4 H 0.08 4.07 6.72 -2.91 -0.02 4.05 16 5 C -0.06 -3.56 5.08 84.86 0.43 -3.13 16 6 N -0.94 -56.76 10.72 21.65 0.23 -56.52 16 7 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 8 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 C 0.16 6.28 5.15 86.38 0.45 6.72 16 12 C -0.10 -3.41 2.55 -10.72 -0.03 -3.43 16 13 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.11 -3.30 4.43 30.62 0.14 -3.17 16 15 C -0.13 -2.75 6.08 30.67 0.19 -2.56 16 16 C 0.11 1.73 6.35 86.35 0.55 2.28 16 17 N -0.61 -14.42 2.97 -818.71 -2.43 -16.86 16 18 C 0.50 12.52 7.70 87.66 0.67 13.19 16 19 O -0.59 -20.52 15.39 -3.03 -0.05 -20.57 16 20 C -0.13 -1.87 3.81 29.85 0.11 -1.75 16 21 C -0.09 -1.50 3.98 30.59 0.12 -1.38 16 22 C -0.08 -0.94 2.27 -10.68 -0.02 -0.97 16 23 C -0.15 -1.73 5.10 30.68 0.16 -1.58 16 24 C 0.06 0.64 6.84 72.01 0.49 1.13 16 25 O -0.41 -6.77 10.77 -148.98 -1.60 -8.37 16 26 C 0.06 0.69 6.84 72.01 0.49 1.18 16 27 C -0.15 -1.91 5.42 30.68 0.17 -1.74 16 28 C 0.12 3.58 5.72 86.36 0.49 4.07 16 29 H 0.00 0.17 7.36 -2.39 -0.02 0.15 16 30 H 0.02 0.84 7.31 -2.39 -0.02 0.83 16 31 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 32 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 34 H 0.05 1.99 8.04 -2.38 -0.02 1.97 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 2.12 5.95 -2.39 -0.01 2.11 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.12 1.05 5.94 -2.39 -0.01 1.03 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.22 6.21 -2.38 -0.01 1.21 16 42 H 0.12 1.02 7.94 -2.39 -0.02 1.01 16 43 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 44 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.09 0.72 6.75 -2.39 -0.02 0.70 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 49 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 55 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -72.52 411.83 3.21 -69.31 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.83 Total: 12.24 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 6.24 Total: 6.92 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.24 Total: -106.17 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.65 Total: -28.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.52 3.21 -69.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317044916.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.459 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds