Wall clock time and date at job start Tue Mar 31 2020 22:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99741 * 2 1 4 4 C 1.53004 * 109.47419 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47390 * 175.69717 * 4 3 2 6 6 C 1.50697 * 110.43475 * 297.51872 * 5 4 3 7 7 O 1.21281 * 120.00647 * 121.67565 * 6 5 4 8 8 N 1.34778 * 119.99902 * 301.94652 * 6 5 4 9 9 C 1.46506 * 120.00206 * 174.71931 * 8 6 5 10 10 H 1.08996 * 109.46888 * 325.00674 * 9 8 6 11 11 C 1.53006 * 109.46675 * 85.00355 * 9 8 6 12 12 C 1.52992 * 109.47609 * 60.00144 * 11 9 8 13 13 C 1.53004 * 109.47339 * 59.99610 * 12 11 9 14 14 C 1.53001 * 109.47134 * 300.00189 * 13 12 11 15 15 H 1.09004 * 109.47103 * 300.00193 * 14 13 12 16 16 N 1.46493 * 109.47300 * 179.97438 * 14 13 12 17 17 C 1.36932 * 120.00027 * 85.00227 * 16 14 13 18 18 H 1.08005 * 120.00213 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00428 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99779 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00508 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46988 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47295 * 119.99849 * 21 19 17 24 24 H 1.48497 * 109.47633 * 240.00103 * 21 19 17 25 25 C 1.52995 * 109.46961 * 205.00071 * 9 8 6 26 26 C 1.54892 * 110.59770 * 60.13354 * 5 4 3 27 27 C 1.54892 * 102.74657 * 156.67618 * 26 5 4 28 28 C 1.54264 * 104.19500 * 322.05781 * 27 26 5 29 29 C 1.53863 * 106.60013 * 23.61139 * 28 27 26 30 30 H 1.08994 * 109.47712 * 60.00045 * 1 2 3 31 31 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46946 * 299.99373 * 1 2 3 33 33 H 1.09006 * 109.47333 * 59.99982 * 3 2 1 34 34 H 1.08998 * 109.47465 * 300.00049 * 3 2 1 35 35 H 1.09004 * 109.46753 * 55.69852 * 4 3 2 36 36 H 1.08998 * 109.46721 * 295.69756 * 4 3 2 37 37 H 0.97004 * 119.99757 * 354.72068 * 8 6 5 38 38 H 1.08998 * 109.46319 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.46790 * 299.99727 * 11 9 8 40 40 H 1.08994 * 109.47568 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.47025 * 299.99877 * 12 11 9 42 42 H 1.08999 * 109.46844 * 60.00156 * 13 12 11 43 43 H 1.08992 * 109.47381 * 180.02562 * 13 12 11 44 44 H 0.96999 * 120.00109 * 265.00172 * 16 14 13 45 45 H 0.97003 * 120.00205 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.47581 * 60.00508 * 25 9 8 47 47 H 1.09004 * 109.47207 * 180.02562 * 25 9 8 48 48 H 1.08998 * 110.75618 * 274.99012 * 26 5 4 49 49 H 1.08999 * 110.75663 * 38.36113 * 26 5 4 50 50 H 1.08998 * 110.48442 * 203.37934 * 27 26 5 51 51 H 1.09001 * 110.60096 * 80.79274 * 27 26 5 52 52 H 1.08994 * 110.03025 * 264.32422 * 28 27 26 53 53 H 1.09005 * 110.06887 * 142.92303 * 28 27 26 54 54 H 1.09002 * 110.03466 * 240.71710 * 29 28 27 55 55 H 1.09005 * 110.07732 * 119.30639 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1573 2.5785 -0.1089 6 6 3.7671 3.2291 -1.4110 7 8 3.1808 4.2908 -1.4068 8 7 4.0648 2.6284 -2.5802 9 6 3.5853 3.2007 -3.8407 10 1 2.6011 3.6433 -3.6877 11 6 4.5614 4.2794 -4.3149 12 6 5.9430 3.6583 -4.5296 13 6 5.8481 2.5562 -5.5867 14 6 4.8721 1.4775 -5.1125 15 1 5.2288 1.0517 -4.1746 16 7 4.7807 0.4226 -6.1248 17 6 5.6957 -0.5961 -6.1367 18 1 6.4851 -0.6216 -5.3999 19 6 5.6095 -1.5955 -7.0962 20 7 4.6485 -1.5637 -7.9950 21 14 6.8582 -2.9847 -7.1128 22 1 7.8295 -2.7904 -6.0064 23 1 6.1579 -4.2819 -6.9338 24 1 7.5795 -2.9866 -8.4108 25 6 3.4904 2.0987 -4.8977 26 6 3.7270 3.4617 1.0887 27 6 4.8551 4.5210 1.1547 28 6 6.1364 3.7307 0.8179 29 6 5.6927 2.4957 0.0146 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8515 0.5789 -0.8499 36 1 3.8628 0.7118 0.9252 37 1 4.5965 1.8171 -2.5871 38 1 4.2044 4.7055 -5.2524 39 1 4.6290 5.0645 -3.5618 40 1 6.6382 4.4266 -4.8678 41 1 6.2997 3.2325 -3.5918 42 1 5.4914 2.9821 -6.5245 43 1 6.8322 2.1135 -5.7394 44 1 4.0720 0.4456 -6.7867 45 1 4.5884 -2.2618 -8.6658 46 1 2.7951 1.3302 -4.5600 47 1 3.1341 2.5245 -5.8357 48 1 2.7643 3.9342 0.8939 49 1 3.6924 2.8764 2.0075 50 1 4.9211 4.9459 2.1563 51 1 4.6869 5.3068 0.4183 52 1 6.6352 3.4197 1.7357 53 1 6.8080 4.3450 0.2180 54 1 5.9763 1.5852 0.5425 55 1 6.1482 2.5100 -0.9757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317366740.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:15 Heat of formation + Delta-G solvation = -123.297949 kcal Electronic energy + Delta-G solvation = -31969.888473 eV Core-core repulsion = 28004.724187 eV Total energy + Delta-G solvation = -3965.164286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.86409 -39.95639 -38.77415 -37.88724 -36.12321 -34.56303 -33.47892 -32.86201 -30.99562 -29.66779 -29.41732 -28.74897 -26.76538 -25.69365 -24.12409 -23.68130 -23.18638 -22.47241 -21.27043 -20.61150 -19.92785 -19.11925 -17.90045 -17.52528 -17.14895 -16.87087 -16.70729 -16.27846 -16.19962 -15.82966 -15.77961 -15.41831 -15.20792 -14.96043 -14.77313 -14.73866 -14.24958 -13.97463 -13.84033 -13.52418 -13.23036 -13.09151 -13.04375 -12.89245 -12.81581 -12.60678 -12.43087 -12.23969 -12.20697 -12.12138 -12.02113 -11.95698 -11.91326 -11.77572 -11.60483 -11.54721 -11.45727 -11.28049 -11.00615 -10.84482 -10.68706 -10.56470 -9.97406 -8.97840 -7.91822 -5.19672 1.48704 1.48990 1.58513 1.67806 2.23193 2.57692 2.72241 3.42017 3.46782 3.60304 3.64335 3.78056 3.86349 3.92424 4.05868 4.06738 4.18023 4.29290 4.31310 4.35373 4.36211 4.42583 4.46903 4.49200 4.53172 4.56068 4.57271 4.66398 4.68541 4.71825 4.80083 4.80725 4.82436 4.93152 4.96765 5.03474 5.07062 5.08249 5.10641 5.17035 5.18453 5.22001 5.29437 5.36537 5.37430 5.50623 5.52556 5.53403 5.57243 5.67436 6.16942 6.30487 6.59370 7.28162 7.36767 8.12977 8.35369 9.31997 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.003507 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.258427 B = 7983.104919 C = 8971.938885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.062 3.938 4 C -0.100 4.100 5 C -0.076 4.076 6 C 0.528 3.472 7 O -0.572 6.572 8 N -0.714 5.714 9 C 0.161 3.839 10 H 0.077 0.923 11 C -0.120 4.120 12 C -0.103 4.103 13 C -0.127 4.127 14 C 0.179 3.821 15 H 0.044 0.956 16 N -0.737 5.737 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.966 3.034 22 H -0.264 1.264 23 H -0.296 1.296 24 H -0.297 1.297 25 C -0.121 4.121 26 C -0.100 4.100 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.113 4.113 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.047 0.953 52 H 0.084 0.916 53 H 0.059 0.941 54 H 0.096 0.904 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 11.193 21.317 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.079 4.079 6 C 0.316 3.684 7 O -0.451 6.451 8 N -0.366 5.366 9 C 0.056 3.944 10 H 0.096 0.904 11 C -0.158 4.158 12 C -0.141 4.141 13 C -0.167 4.167 14 C 0.071 3.929 15 H 0.062 0.938 16 N -0.376 5.376 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.224 1.224 25 C -0.160 4.160 26 C -0.137 4.137 27 C -0.160 4.160 28 C -0.159 4.159 29 C -0.151 4.151 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.241 0.759 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.113 0.887 50 H 0.099 0.901 51 H 0.066 0.934 52 H 0.103 0.897 53 H 0.078 0.922 54 H 0.114 0.886 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.051 11.656 21.365 24.424 hybrid contribution 0.132 -1.022 -1.188 1.573 sum -1.919 10.634 20.177 22.888 Atomic orbital electron populations 1.22904 0.79785 1.03792 1.00566 1.87833 1.21247 1.28518 1.95525 1.22583 0.94468 0.84303 1.00097 1.21547 0.92758 0.94627 1.04860 1.21620 0.98224 0.95396 0.92684 1.20726 0.77558 0.84386 0.85752 1.90638 1.43288 1.23139 1.88041 1.46183 1.55082 1.29721 1.05567 1.20774 0.97741 0.93292 0.82642 0.90445 1.21821 0.95383 0.97216 1.01379 1.21389 0.96748 0.97381 0.98572 1.22102 0.99663 0.96502 0.98445 1.20337 0.93477 0.87770 0.91312 0.93777 1.42640 1.33953 1.25809 1.35239 1.19634 1.05912 1.00592 1.10254 0.90518 1.25485 1.00826 1.01908 0.98556 1.69821 1.35869 1.36197 1.20280 0.85169 0.78686 0.79286 0.77246 1.18842 1.22344 1.22425 1.21963 0.97717 0.97452 0.98848 1.22462 0.98935 0.96269 0.96068 1.22320 0.94392 0.97608 1.01718 1.22130 0.97487 0.95750 1.00505 1.22288 0.90769 1.00554 1.01461 0.94383 0.88442 0.92575 0.91733 0.95332 0.91204 0.87971 0.75879 0.90635 0.91945 0.91421 0.92043 0.93427 0.93946 0.79702 0.94229 0.92312 0.90609 0.91967 0.88657 0.90120 0.93370 0.89715 0.92226 0.88554 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.00 10.70 -148.98 -1.59 -11.59 16 3 C 0.06 1.33 5.50 71.98 0.40 1.73 16 4 C -0.10 -1.89 4.47 30.59 0.14 -1.76 16 5 C -0.08 -1.43 0.47 -51.85 -0.02 -1.46 16 6 C 0.53 13.20 5.07 87.66 0.44 13.64 16 7 O -0.57 -17.65 14.77 -3.03 -0.04 -17.69 16 8 N -0.71 -17.84 3.87 -442.53 -1.71 -19.55 16 9 C 0.16 4.33 2.75 44.99 0.12 4.45 16 10 H 0.08 2.19 7.65 -2.39 -0.02 2.17 16 11 C -0.12 -3.03 5.60 30.59 0.17 -2.86 16 12 C -0.10 -2.68 5.77 30.59 0.18 -2.50 16 13 C -0.13 -4.25 5.50 30.60 0.17 -4.08 16 14 C 0.18 6.57 2.60 45.00 0.12 6.68 16 15 H 0.04 1.60 6.44 -2.39 -0.02 1.58 16 16 N -0.74 -35.81 5.12 -322.94 -1.65 -37.46 16 17 C -0.23 -12.48 9.93 84.03 0.83 -11.64 16 18 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 21 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 C -0.12 -3.80 5.08 30.60 0.16 -3.64 16 26 C -0.10 -1.71 4.45 31.89 0.14 -1.57 16 27 C -0.12 -2.06 6.52 31.67 0.21 -1.86 16 28 C -0.12 -1.78 6.80 31.31 0.21 -1.57 16 29 C -0.11 -1.80 5.92 31.31 0.19 -1.61 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 1.19 7.40 -2.38 -0.02 1.18 16 34 H 0.03 0.72 7.21 -2.39 -0.02 0.70 16 35 H 0.07 1.48 7.59 -2.38 -0.02 1.46 16 36 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.40 9.89 6.20 -92.71 -0.57 9.32 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.54 7.60 -2.39 -0.02 1.52 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.37 19.66 7.80 -92.71 -0.72 18.93 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.06 1.29 7.37 -2.39 -0.02 1.27 16 49 H 0.09 1.23 8.06 -2.39 -0.02 1.21 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 1.05 7.65 -2.39 -0.02 1.03 16 52 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 54 H 0.10 1.21 7.80 -2.39 -0.02 1.19 16 55 H 0.06 1.12 7.51 -2.38 -0.02 1.10 16 Total: -1.00 -66.62 417.62 2.03 -64.59 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.44 Total: 42.86 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 5.16 Total: -10.13 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -3.08 Total: -115.65 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.64 Total: -29.28 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.62 2.03 -64.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317366740.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.704 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds