Wall clock time and date at job start Tue Mar 31 2020 22:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99940 * 2 1 4 4 C 1.52998 * 109.47209 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47199 * 175.60111 * 4 3 2 6 6 C 1.50693 * 110.43679 * 296.42625 * 5 4 3 7 7 O 1.21282 * 119.99748 * 123.20157 * 6 5 4 8 8 N 1.34775 * 120.00141 * 303.20803 * 6 5 4 9 9 C 1.46496 * 120.00110 * 174.94945 * 8 6 5 10 10 H 1.08997 * 109.47388 * 34.99355 * 9 8 6 11 11 C 1.53000 * 109.47102 * 274.99871 * 9 8 6 12 12 C 1.53001 * 109.46866 * 299.99869 * 11 9 8 13 13 C 1.53001 * 109.47349 * 299.99798 * 12 11 9 14 14 C 1.52999 * 109.46759 * 59.99940 * 13 12 11 15 15 H 1.08997 * 109.47183 * 60.00397 * 14 13 12 16 16 N 1.46506 * 109.47125 * 180.02562 * 14 13 12 17 17 C 1.36934 * 119.99540 * 275.00126 * 16 14 13 18 18 H 1.07997 * 120.00468 * 359.97438 * 17 16 14 19 19 C 1.38821 * 119.99574 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99818 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47089 * 269.99893 * 21 19 17 23 23 H 1.48504 * 109.47327 * 29.99738 * 21 19 17 24 24 H 1.48499 * 109.47291 * 150.00182 * 21 19 17 25 25 C 1.52996 * 109.47527 * 154.99744 * 9 8 6 26 26 C 1.54892 * 110.48474 * 58.97170 * 5 4 3 27 27 C 1.55242 * 102.58729 * 156.67527 * 26 5 4 28 28 C 1.54268 * 104.22943 * 322.08055 * 27 26 5 29 29 C 1.53871 * 106.60087 * 23.61477 * 28 27 26 30 30 H 1.09005 * 109.47090 * 60.00596 * 1 2 3 31 31 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47393 * 300.00222 * 1 2 3 33 33 H 1.08990 * 109.47199 * 59.99682 * 3 2 1 34 34 H 1.09001 * 109.47187 * 299.99674 * 3 2 1 35 35 H 1.09004 * 109.47494 * 55.60204 * 4 3 2 36 36 H 1.09000 * 109.47222 * 295.60608 * 4 3 2 37 37 H 0.97003 * 119.99827 * 354.94343 * 8 6 5 38 38 H 1.09000 * 109.47156 * 180.02562 * 11 9 8 39 39 H 1.08994 * 109.47449 * 59.99642 * 11 9 8 40 40 H 1.09006 * 109.47310 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.47253 * 59.99805 * 12 11 9 42 42 H 1.09005 * 109.47263 * 300.00307 * 13 12 11 43 43 H 1.08997 * 109.47402 * 179.97438 * 13 12 11 44 44 H 0.96994 * 120.00477 * 95.00253 * 16 14 13 45 45 H 0.97006 * 119.99970 * 359.97438 * 20 19 17 46 46 H 1.09006 * 109.47149 * 300.00196 * 25 9 8 47 47 H 1.09000 * 109.47879 * 179.97438 * 25 9 8 48 48 H 1.09001 * 110.75214 * 275.06658 * 26 5 4 49 49 H 1.09001 * 110.75402 * 38.43565 * 26 5 4 50 50 H 1.09001 * 110.46190 * 203.39184 * 27 26 5 51 51 H 1.08994 * 110.46847 * 80.77060 * 27 26 5 52 52 H 1.08997 * 110.03356 * 264.32854 * 28 27 26 53 53 H 1.09005 * 110.02985 * 142.89687 * 28 27 26 54 54 H 1.09004 * 110.03410 * 240.71389 * 29 28 27 55 55 H 1.08994 * 110.03488 * 119.28467 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5782 -0.1113 6 6 3.7889 3.2160 -1.4259 7 8 3.2260 4.2901 -1.4421 8 7 4.0847 2.5927 -2.5837 9 6 3.6296 3.1572 -3.8566 10 1 3.6511 4.2455 -3.7998 11 6 2.2007 2.6895 -4.1401 12 6 2.1706 1.1618 -4.2198 13 6 3.0940 0.6915 -5.3455 14 6 4.5228 1.1594 -5.0620 15 1 4.8615 0.7393 -4.1150 16 7 5.4069 0.7096 -6.1402 17 6 5.9504 -0.5467 -6.1007 18 1 5.7277 -1.2057 -5.2747 19 6 6.7877 -0.9731 -7.1226 20 7 7.0596 -0.1697 -8.1291 21 14 7.5285 -2.6870 -7.0692 22 1 8.8310 -2.6414 -6.3572 23 1 6.6050 -3.6034 -6.3532 24 1 7.7387 -3.1789 -8.4545 25 6 4.5530 2.6870 -4.9823 26 6 3.7024 3.4702 1.0704 27 6 4.8310 4.5335 1.1458 28 6 6.1189 3.7418 0.8386 29 6 5.6906 2.4987 0.0393 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8515 0.5774 -0.8489 36 1 3.8629 0.7131 0.9259 37 1 4.5991 1.7704 -2.5741 38 1 1.8623 3.1091 -5.0874 39 1 1.5429 3.0244 -3.3382 40 1 1.1525 0.8285 -4.4214 41 1 2.5093 0.7418 -3.2728 42 1 2.7553 1.1116 -6.2927 43 1 3.0728 -0.3968 -5.4021 44 1 5.6073 1.3016 -6.8819 45 1 6.6746 0.7202 -8.1570 46 1 5.5710 3.0202 -4.7803 47 1 4.2141 3.1066 -5.9295 48 1 2.7417 3.9376 0.8540 49 1 3.6530 2.8928 1.9936 50 1 4.8792 4.9678 2.1444 51 1 4.6733 5.3105 0.3979 52 1 6.6023 3.4400 1.7677 53 1 6.7992 4.3517 0.2441 54 1 5.9662 1.5935 0.5805 55 1 6.1631 2.5052 -0.9429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317366742.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:20 Heat of formation + Delta-G solvation = -123.632226 kcal Electronic energy + Delta-G solvation = -32178.580389 eV Core-core repulsion = 28213.401607 eV Total energy + Delta-G solvation = -3965.178781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92096 -40.02422 -38.79565 -37.92921 -36.42453 -34.66216 -33.51413 -32.87705 -31.00478 -29.64644 -29.32050 -28.75548 -26.75543 -25.62316 -24.18856 -23.69864 -23.27726 -22.64805 -21.32013 -20.66045 -19.99746 -19.33928 -17.91695 -17.51349 -17.31914 -17.03061 -16.71318 -16.30318 -16.05452 -15.86556 -15.67907 -15.65873 -15.43759 -15.23040 -14.81241 -14.74770 -14.29512 -14.09782 -13.85874 -13.48243 -13.26172 -13.16066 -13.11738 -12.83233 -12.65622 -12.61291 -12.46257 -12.24325 -12.17534 -12.15736 -11.94358 -11.90930 -11.81378 -11.68337 -11.65774 -11.55575 -11.45654 -11.32420 -10.98124 -10.85215 -10.70310 -10.59981 -10.02230 -9.09629 -8.35893 -5.29834 1.59189 1.62792 1.69354 1.83117 2.17728 2.71812 2.72152 3.42456 3.43550 3.49132 3.59114 3.71468 3.77996 3.83213 4.02817 4.05101 4.13996 4.18433 4.20712 4.25935 4.33253 4.41849 4.44635 4.46697 4.50204 4.52597 4.53498 4.56721 4.61678 4.65994 4.71263 4.77703 4.82792 4.85700 4.91115 4.99448 5.01510 5.04266 5.06128 5.07667 5.12987 5.14253 5.24960 5.27366 5.32720 5.42080 5.46160 5.49343 5.58027 5.64320 6.17937 6.52519 6.53255 7.12262 7.22719 8.02525 8.14049 9.16213 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.003397 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.521820 B = 8241.622048 C = 8724.176523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.063 3.937 4 C -0.100 4.100 5 C -0.076 4.076 6 C 0.529 3.471 7 O -0.572 6.572 8 N -0.715 5.715 9 C 0.159 3.841 10 H 0.082 0.918 11 C -0.119 4.119 12 C -0.102 4.102 13 C -0.125 4.125 14 C 0.184 3.816 15 H 0.042 0.958 16 N -0.749 5.749 17 C -0.324 4.324 18 H 0.066 0.934 19 C -0.104 4.104 20 N -0.978 5.978 21 Si 1.126 2.874 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.296 1.296 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.404 0.596 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.358 0.642 45 H 0.244 0.756 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.082 0.918 51 H 0.046 0.954 52 H 0.086 0.914 53 H 0.055 0.945 54 H 0.098 0.902 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 5.964 22.216 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.014 4.014 4 C -0.138 4.138 5 C -0.079 4.079 6 C 0.316 3.684 7 O -0.451 6.451 8 N -0.366 5.366 9 C 0.054 3.946 10 H 0.100 0.900 11 C -0.157 4.157 12 C -0.140 4.140 13 C -0.166 4.166 14 C 0.076 3.924 15 H 0.060 0.940 16 N -0.390 5.390 17 C -0.455 4.455 18 H 0.084 0.916 19 C -0.295 4.295 20 N -0.627 5.627 21 Si 0.951 3.049 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.223 1.223 25 C -0.160 4.160 26 C -0.136 4.136 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.152 4.152 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.240 0.760 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.190 0.810 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.100 0.900 51 H 0.065 0.935 52 H 0.105 0.895 53 H 0.074 0.926 54 H 0.116 0.884 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.927 5.327 21.588 24.351 hybrid contribution -0.880 1.253 -0.247 1.550 sum -10.807 6.580 21.341 24.810 Atomic orbital electron populations 1.22899 0.79803 1.03756 1.00569 1.87833 1.21177 1.28323 1.95528 1.22562 0.94148 0.84431 1.00238 1.21543 0.93048 0.94351 1.04838 1.21625 0.98051 0.95751 0.92505 1.20748 0.77261 0.84402 0.85949 1.90638 1.43977 1.22472 1.88040 1.46178 1.56289 1.28516 1.05659 1.20776 0.93529 0.98129 0.82199 0.90015 1.21830 0.95691 0.96073 1.02107 1.21374 0.99197 0.95284 0.98125 1.22071 0.96582 0.99645 0.98258 1.20270 0.89238 0.92346 0.90521 0.94002 1.42653 1.56515 1.14799 1.25078 1.20362 1.24973 0.92700 1.07490 0.91573 1.27071 0.99866 1.08888 0.93719 1.70960 1.48984 1.09038 1.33705 0.82640 0.75796 0.70964 0.75484 1.21151 1.19893 1.22275 1.21972 0.99412 0.95966 0.98667 1.22526 0.98770 0.96078 0.96233 1.22390 0.94313 0.97647 1.01751 1.22141 0.97567 0.95703 1.00603 1.22289 0.91080 1.00564 1.01226 0.94186 0.88450 0.92818 0.91866 0.94947 0.91224 0.88002 0.75956 0.90370 0.91970 0.91510 0.92242 0.93415 0.94350 0.80990 0.94537 0.92182 0.90529 0.91783 0.88479 0.89970 0.93489 0.89549 0.92596 0.88387 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.91 10.70 -148.98 -1.59 -10.51 16 3 C 0.06 1.23 5.49 71.98 0.40 1.63 16 4 C -0.10 -1.80 4.48 30.59 0.14 -1.66 16 5 C -0.08 -1.44 0.47 -51.85 -0.02 -1.47 16 6 C 0.53 13.32 5.13 87.66 0.45 13.77 16 7 O -0.57 -17.77 14.67 -3.03 -0.04 -17.82 16 8 N -0.71 -18.10 3.88 -442.56 -1.72 -19.82 16 9 C 0.16 4.29 2.82 44.99 0.13 4.42 16 10 H 0.08 2.32 7.51 -2.39 -0.02 2.30 16 11 C -0.12 -3.00 5.60 30.59 0.17 -2.83 16 12 C -0.10 -2.75 5.77 30.60 0.18 -2.57 16 13 C -0.13 -4.33 5.50 30.59 0.17 -4.16 16 14 C 0.18 6.89 2.60 44.99 0.12 7.01 16 15 H 0.04 1.58 6.44 -2.39 -0.02 1.56 16 16 N -0.75 -36.60 5.12 -322.93 -1.65 -38.25 16 17 C -0.32 -17.76 9.93 84.04 0.83 -16.93 16 18 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 19 C -0.10 -5.99 5.50 84.86 0.47 -5.52 16 20 N -0.98 -60.92 13.70 21.65 0.30 -60.63 16 21 Si 1.13 51.66 29.92 68.60 2.05 53.71 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 C -0.12 -3.80 5.07 30.59 0.16 -3.65 16 26 C -0.10 -1.69 4.41 32.01 0.14 -1.55 16 27 C -0.12 -2.16 6.53 31.79 0.21 -1.95 16 28 C -0.12 -1.97 6.80 31.32 0.21 -1.75 16 29 C -0.11 -1.95 5.92 31.32 0.19 -1.76 16 30 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.08 7.36 -2.39 -0.02 1.06 16 34 H 0.03 0.74 7.24 -2.39 -0.02 0.72 16 35 H 0.07 1.39 7.48 -2.39 -0.02 1.37 16 36 H 0.10 1.48 8.06 -2.39 -0.02 1.46 16 37 H 0.40 10.14 6.19 -92.71 -0.57 9.57 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.06 1.61 7.60 -2.39 -0.02 1.60 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.36 18.48 6.63 -92.71 -0.61 17.87 16 45 H 0.24 15.14 6.77 -92.70 -0.63 14.51 16 46 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.06 1.30 7.39 -2.39 -0.02 1.29 16 49 H 0.10 1.22 8.06 -2.39 -0.02 1.20 16 50 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.05 1.07 7.58 -2.39 -0.02 1.05 16 52 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 54 H 0.10 1.32 7.78 -2.38 -0.02 1.30 16 55 H 0.06 1.16 7.62 -2.39 -0.02 1.14 16 Total: -1.00 -68.88 415.75 2.32 -66.56 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: -0.19 Total: 44.05 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 5.17 Total: -17.31 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -3.08 Total: -118.69 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.64 Total: -28.32 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Total: -68.88 2.32 -66.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317366742.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.071 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds