Wall clock time and date at job start Tue Mar 31 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99938 * 2 1 4 4 C 1.53003 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47036 * 175.39157 * 4 3 2 6 6 C 1.50701 * 110.43399 * 63.39950 * 5 4 3 7 7 O 1.21278 * 120.00080 * 242.49109 * 6 5 4 8 8 N 1.34775 * 119.99981 * 62.49575 * 6 5 4 9 9 C 1.46500 * 120.00068 * 174.69494 * 8 6 5 10 10 H 1.09003 * 109.46888 * 35.00216 * 9 8 6 11 11 C 1.52995 * 109.47428 * 275.00592 * 9 8 6 12 12 C 1.53003 * 109.47022 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47598 * 59.99188 * 12 11 9 14 14 C 1.52995 * 109.47597 * 300.00461 * 13 12 11 15 15 H 1.09003 * 109.46788 * 300.00335 * 14 13 12 16 16 N 1.46494 * 109.47321 * 179.97438 * 14 13 12 17 17 C 1.36940 * 120.00241 * 85.00121 * 16 14 13 18 18 H 1.08009 * 119.99296 * 359.97438 * 17 16 14 19 19 C 1.38802 * 120.00405 * 180.02562 * 17 16 14 20 20 N 1.31631 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00176 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47270 * 60.00113 * 21 19 17 23 23 H 1.48506 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47290 * 299.99674 * 21 19 17 25 25 C 1.52993 * 109.47166 * 154.99796 * 9 8 6 26 26 C 1.54896 * 110.59870 * 186.01815 * 5 4 3 27 27 C 1.54880 * 102.74991 * 156.67696 * 26 5 4 28 28 C 1.54274 * 104.19609 * 322.05609 * 27 26 5 29 29 C 1.53869 * 106.59442 * 23.61345 * 28 27 26 30 30 H 1.08995 * 109.47262 * 300.00145 * 1 2 3 31 31 H 1.09002 * 109.46914 * 60.00150 * 1 2 3 32 32 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47010 * 60.00037 * 3 2 1 34 34 H 1.08996 * 109.47161 * 299.99875 * 3 2 1 35 35 H 1.09000 * 109.47428 * 55.39198 * 4 3 2 36 36 H 1.09000 * 109.47112 * 295.39198 * 4 3 2 37 37 H 0.97004 * 120.00010 * 354.70239 * 8 6 5 38 38 H 1.08994 * 109.47367 * 59.99651 * 11 9 8 39 39 H 1.09003 * 109.46788 * 299.99134 * 11 9 8 40 40 H 1.09003 * 109.46401 * 299.99088 * 12 11 9 41 41 H 1.08999 * 109.46859 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.47021 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.46604 * 60.00659 * 13 12 11 44 44 H 0.97004 * 119.99921 * 264.99403 * 16 14 13 45 45 H 0.96998 * 119.99754 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.47325 * 60.00698 * 25 9 8 47 47 H 1.08999 * 109.47691 * 300.00550 * 25 9 8 48 48 H 1.08999 * 110.75353 * 274.99007 * 26 5 4 49 49 H 1.08993 * 110.75435 * 38.35725 * 26 5 4 50 50 H 1.08997 * 110.49175 * 203.37729 * 27 26 5 51 51 H 1.09005 * 110.48945 * 80.73206 * 27 26 5 52 52 H 1.08997 * 110.02911 * 264.32613 * 28 27 26 53 53 H 1.08997 * 110.06879 * 142.91627 * 28 27 26 54 54 H 1.09002 * 110.02839 * 240.71358 * 29 28 27 55 55 H 1.08995 * 110.07309 * 119.31109 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5777 -0.1153 6 6 3.8010 3.4146 1.0863 7 8 3.1474 4.4268 0.9480 8 7 4.2089 3.0384 2.3145 9 6 3.9636 3.9094 3.4666 10 1 3.0090 4.4200 3.3393 11 6 5.0854 4.9445 3.5714 12 6 4.8295 5.8538 4.7751 13 6 4.7916 5.0115 6.0517 14 6 3.6698 3.9765 5.9469 15 1 2.7152 4.4870 5.8199 16 7 3.6340 3.1696 7.1691 17 6 2.9422 3.6152 8.2637 18 1 2.4233 4.5617 8.2259 19 6 2.9087 2.8510 9.4219 20 7 3.5415 1.6977 9.4680 21 14 1.9655 3.4591 10.9152 22 1 0.5345 3.6340 10.5594 23 1 2.0842 2.4666 12.0135 24 1 2.5277 4.7597 11.3598 25 6 3.9254 3.0676 4.7435 26 6 5.6954 2.4768 -0.2688 27 6 6.0587 3.8155 -0.9578 28 6 4.9012 4.0574 -1.9486 29 6 3.6924 3.2704 -1.4128 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8519 0.5740 -0.8449 36 1 3.8624 0.7168 0.9293 37 1 4.6649 2.1908 2.4357 38 1 5.1126 5.5442 2.6617 39 1 6.0400 4.4339 3.6988 40 1 3.8748 6.3643 4.6481 41 1 5.6285 6.5914 4.8494 42 1 4.6098 5.6594 6.9092 43 1 5.7463 4.5010 6.1786 44 1 4.1003 2.3197 7.2030 45 1 3.5177 1.1635 10.2773 46 1 4.8800 2.5570 4.8709 47 1 3.1261 2.3302 4.6688 48 1 6.1767 2.4011 0.7062 49 1 5.9658 1.6311 -0.9009 50 1 7.0049 3.7255 -1.4913 51 1 6.1080 4.6208 -0.2248 52 1 5.1750 3.6929 -2.9387 53 1 4.6641 5.1203 -1.9945 54 1 3.3794 2.5240 -2.1430 55 1 2.8684 3.9508 -1.1982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317366744.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:24 Heat of formation + Delta-G solvation = -127.358266 kcal Electronic energy + Delta-G solvation = -31174.784162 eV Core-core repulsion = 27209.443808 eV Total energy + Delta-G solvation = -3965.340354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.80244 -39.85579 -38.81147 -37.96586 -36.23709 -34.88165 -33.55925 -32.91671 -30.85977 -29.70964 -29.29354 -28.70141 -26.76096 -25.72583 -24.20262 -23.72711 -23.16832 -22.11357 -21.22610 -21.07072 -20.02903 -19.06279 -17.88906 -17.62757 -17.36020 -16.97015 -16.57374 -16.33681 -16.10380 -15.93123 -15.53846 -15.42266 -15.28099 -15.03140 -14.92310 -14.68037 -14.29690 -14.19394 -13.92753 -13.55581 -13.42800 -13.20931 -12.91510 -12.80151 -12.64661 -12.44076 -12.29539 -12.20630 -12.18981 -12.12382 -12.06346 -11.98755 -11.93380 -11.78999 -11.64199 -11.58773 -11.47328 -11.37434 -11.27153 -10.87624 -10.70333 -10.58083 -10.02342 -9.00717 -7.94437 -5.22457 1.46359 1.48716 1.54758 1.64650 2.14809 2.56138 2.69739 3.38506 3.44929 3.59207 3.61847 3.73031 3.86156 4.01978 4.04053 4.06472 4.14209 4.26530 4.29407 4.31716 4.41509 4.44155 4.45489 4.48033 4.51757 4.53268 4.56094 4.59113 4.66211 4.70829 4.74523 4.80092 4.82809 4.92441 5.00716 5.02320 5.05531 5.09189 5.11535 5.15112 5.19424 5.21099 5.30616 5.33059 5.34080 5.47970 5.48925 5.51237 5.55234 5.65293 6.13063 6.28181 6.58418 7.27344 7.34388 8.09933 8.33968 9.28702 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.002798 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.008721 B =10005.195445 C =11553.374597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.058 3.942 4 C -0.098 4.098 5 C -0.075 4.075 6 C 0.526 3.474 7 O -0.577 6.577 8 N -0.714 5.714 9 C 0.159 3.841 10 H 0.064 0.936 11 C -0.113 4.113 12 C -0.106 4.106 13 C -0.125 4.125 14 C 0.178 3.822 15 H 0.033 0.967 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.114 4.114 26 C -0.105 4.105 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.111 4.111 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.410 0.590 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.046 0.954 52 H 0.083 0.917 53 H 0.050 0.950 54 H 0.088 0.912 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -0.087 -26.948 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.019 4.019 4 C -0.135 4.135 5 C -0.078 4.078 6 C 0.314 3.686 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.054 3.946 10 H 0.082 0.918 11 C -0.151 4.151 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.069 3.931 15 H 0.051 0.949 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.164 4.164 28 C -0.158 4.158 29 C -0.149 4.149 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.124 0.876 50 H 0.105 0.895 51 H 0.065 0.935 52 H 0.102 0.898 53 H 0.069 0.931 54 H 0.106 0.894 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.994 0.578 -26.927 27.228 hybrid contribution -0.737 -0.022 1.569 1.733 sum 3.257 0.556 -25.358 25.573 Atomic orbital electron populations 1.22910 0.79875 1.03916 1.00422 1.87804 1.21100 1.28265 1.95516 1.22619 0.94985 0.84362 0.99910 1.21529 0.92129 0.94629 1.05228 1.21614 0.99031 0.94273 0.92872 1.20846 0.77635 0.85310 0.84830 1.90657 1.40422 1.28336 1.86204 1.46007 1.60252 1.23614 1.06589 1.20712 0.98877 0.90918 0.84132 0.91779 1.21783 0.98525 0.96901 0.97927 1.21414 1.01965 0.97655 0.93487 1.22082 0.99524 0.97948 0.97004 1.20284 0.96065 0.91413 0.85353 0.94919 1.42560 1.61548 1.23004 1.10398 1.19542 1.23345 1.02585 0.91675 0.91099 1.25491 1.02666 0.97436 1.00990 1.69799 1.49099 1.14384 1.28580 0.85285 0.78588 0.77080 0.79274 1.20658 1.22062 1.20484 1.21857 1.02422 0.98016 0.93001 1.22641 0.90002 0.99262 1.02305 1.22371 0.99115 0.96725 0.98140 1.22100 0.94385 0.99695 0.99664 1.22200 0.98884 0.99341 0.94452 0.94602 0.92887 0.88020 0.95639 0.92275 0.87670 0.90235 0.75307 0.92116 0.90579 0.92607 0.90498 0.94069 0.92673 0.79422 0.94035 0.90570 0.92506 0.90426 0.87642 0.89462 0.93537 0.89822 0.93061 0.89374 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.67 16 2 O -0.41 -8.86 10.70 -148.98 -1.59 -10.45 16 3 C 0.06 1.16 5.50 71.98 0.40 1.56 16 4 C -0.10 -1.51 4.50 30.59 0.14 -1.37 16 5 C -0.07 -1.23 0.47 -51.85 -0.02 -1.25 16 6 C 0.53 12.53 5.32 87.66 0.47 13.00 16 7 O -0.58 -18.44 15.05 -3.02 -0.05 -18.48 16 8 N -0.71 -15.93 4.73 -442.55 -2.09 -18.02 16 9 C 0.16 4.34 2.50 44.99 0.11 4.45 16 10 H 0.06 2.08 7.51 -2.39 -0.02 2.07 16 11 C -0.11 -2.82 5.50 30.59 0.17 -2.66 16 12 C -0.11 -2.92 5.92 30.59 0.18 -2.74 16 13 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 14 C 0.18 6.99 2.77 44.98 0.12 7.11 16 15 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 16 N -0.74 -36.91 5.12 -323.02 -1.65 -38.57 16 17 C -0.24 -13.39 9.93 84.03 0.83 -12.56 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 21 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C -0.11 -3.59 4.85 30.58 0.15 -3.45 16 26 C -0.10 -1.24 5.80 31.88 0.18 -1.06 16 27 C -0.13 -1.71 6.61 31.67 0.21 -1.50 16 28 C -0.12 -1.74 6.80 31.32 0.21 -1.53 16 29 C -0.11 -1.84 4.61 31.32 0.14 -1.69 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 0.63 7.53 -2.39 -0.02 0.61 16 34 H 0.06 1.10 6.89 -2.39 -0.02 1.08 16 35 H 0.10 1.25 8.11 -2.39 -0.02 1.23 16 36 H 0.08 1.20 7.60 -2.39 -0.02 1.18 16 37 H 0.41 7.24 7.79 -92.71 -0.72 6.52 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.08 0.89 7.53 -2.39 -0.02 0.87 16 49 H 0.11 0.81 8.04 -2.39 -0.02 0.79 16 50 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 54 H 0.09 1.13 7.54 -2.39 -0.02 1.11 16 55 H 0.06 1.28 6.83 -2.39 -0.02 1.27 16 Total: -1.00 -69.77 422.14 1.51 -68.25 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.59 Total: 37.51 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.18 Total: -9.97 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.46 Total: -115.36 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.64 Total: -28.93 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -69.77 1.51 -68.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317366744.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.106 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds