Wall clock time and date at job start Tue Mar 31 2020 22:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00068 * 2 1 4 4 C 1.52994 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47319 * 63.10375 * 4 3 2 6 6 O 1.21279 * 120.00403 * 234.43167 * 5 4 3 7 7 N 1.34775 * 119.99481 * 54.43021 * 5 4 3 8 8 C 1.46927 * 120.63829 * 4.38469 * 7 5 4 9 9 C 1.53622 * 108.54940 * 126.36474 * 8 7 5 10 10 C 1.53037 * 109.23925 * 54.85889 * 9 8 7 11 11 C 1.53039 * 109.53986 * 298.51163 * 10 9 8 12 12 H 1.09004 * 109.49961 * 301.41654 * 11 10 9 13 13 N 1.46503 * 109.50053 * 181.31584 * 11 10 9 14 14 C 1.46499 * 120.00091 * 300.16498 * 13 11 10 15 15 C 1.36934 * 120.00004 * 120.16052 * 13 11 10 16 16 H 1.08007 * 120.00269 * 22.27673 * 15 13 11 17 17 C 1.38815 * 120.00230 * 202.27379 * 15 13 11 18 18 N 1.31617 * 119.99541 * 17.61599 * 17 15 13 19 19 Si 1.86803 * 120.00132 * 197.61955 * 17 15 13 20 20 H 1.48497 * 109.46894 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47019 * 119.99760 * 19 17 15 22 22 H 1.48502 * 109.46776 * 240.00005 * 19 17 15 23 23 C 1.46930 * 120.63066 * 184.66187 * 7 5 4 24 24 C 1.52998 * 109.47653 * 303.10415 * 4 3 2 25 25 C 1.52998 * 109.47369 * 180.02562 * 24 4 3 26 26 C 1.52998 * 109.47215 * 59.99889 * 25 24 4 27 27 C 1.53002 * 109.47252 * 299.99830 * 26 25 24 28 28 C 1.53005 * 109.46823 * 60.00224 * 27 26 25 29 29 H 1.09000 * 109.47174 * 299.99711 * 1 2 3 30 30 H 1.08991 * 109.46815 * 60.00518 * 1 2 3 31 31 H 1.09002 * 109.46586 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47133 * 300.00087 * 3 2 1 33 33 H 1.09001 * 109.46538 * 59.99948 * 3 2 1 34 34 H 1.08999 * 109.58755 * 246.20537 * 8 7 5 35 35 H 1.09004 * 109.58085 * 6.62231 * 8 7 5 36 36 H 1.09003 * 109.63377 * 294.87344 * 9 8 7 37 37 H 1.08993 * 109.43343 * 174.72798 * 9 8 7 38 38 H 1.09004 * 109.46054 * 178.49308 * 10 9 8 39 39 H 1.08998 * 109.45361 * 58.52532 * 10 9 8 40 40 H 1.08995 * 109.47144 * 95.25584 * 14 13 11 41 41 H 1.08996 * 109.47343 * 215.26196 * 14 13 11 42 42 H 1.08997 * 109.46746 * 335.25892 * 14 13 11 43 43 H 0.97001 * 119.99590 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.58400 * 353.37075 * 23 7 5 45 45 H 1.08996 * 109.58991 * 113.79706 * 23 7 5 46 46 H 1.09005 * 109.47103 * 299.99964 * 24 4 3 47 47 H 1.08996 * 109.47178 * 59.99643 * 24 4 3 48 48 H 1.09000 * 109.47220 * 299.99764 * 25 24 4 49 49 H 1.08997 * 109.47406 * 180.02562 * 25 24 4 50 50 H 1.09003 * 109.46970 * 180.02562 * 26 25 24 51 51 H 1.09000 * 109.47129 * 59.99819 * 26 25 24 52 52 H 1.09000 * 109.47044 * 300.00040 * 27 26 25 53 53 H 1.08999 * 109.47411 * 179.97438 * 27 26 25 54 54 H 1.08996 * 109.46970 * 180.02562 * 28 27 26 55 55 H 1.08991 * 109.47210 * 59.99949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9860 0.5040 -1.2662 6 8 4.6883 -0.4830 -1.2075 7 7 3.6083 0.9921 -2.4643 8 6 2.8383 2.2401 -2.5554 9 6 3.5677 3.1957 -3.5119 10 6 3.7883 2.4945 -4.8541 11 6 4.6658 1.2578 -4.6474 12 1 5.6185 1.5566 -4.2102 13 7 4.9024 0.6049 -5.9374 14 6 3.7713 0.1114 -6.7270 15 6 6.1807 0.4559 -6.4051 16 1 7.0131 0.4742 -5.7171 17 6 6.4068 0.2812 -7.7635 18 7 5.4704 0.5977 -8.6325 19 14 8.0401 -0.4031 -8.3581 20 1 8.9165 -0.6766 -7.1909 21 1 7.8054 -1.6635 -9.1075 22 1 8.6970 0.5873 -9.2485 23 6 3.9536 0.2832 -3.7041 24 6 3.9812 0.3592 1.2093 25 6 5.5065 0.2389 1.2102 26 6 6.1281 1.6347 1.2886 27 6 5.6824 2.4602 0.0799 28 6 4.1571 2.5805 0.0790 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.8404 2.0267 -2.9383 35 1 2.7633 2.6960 -1.5681 36 1 4.5308 3.4763 -3.0854 37 1 2.9622 4.0892 -3.6634 38 1 4.2818 3.1786 -5.5445 39 1 2.8264 2.1921 -5.2681 40 1 3.4837 0.8650 -7.4601 41 1 4.0599 -0.8049 -7.2418 42 1 2.9288 -0.0930 -6.0664 43 1 5.6285 0.4760 -9.5818 44 1 4.6149 -0.5526 -3.4750 45 1 3.0449 -0.0866 -4.1788 46 1 3.6554 0.8515 2.1256 47 1 3.5380 -0.6350 1.1537 48 1 5.8327 -0.2531 0.2940 49 1 5.8240 -0.3495 2.0710 50 1 7.2147 1.5490 1.2888 51 1 5.8018 2.1268 2.2048 52 1 6.0086 1.9681 -0.8364 53 1 6.1248 3.4547 0.1360 54 1 3.8395 3.1682 -0.7823 55 1 3.8309 3.0725 0.9952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317375512.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:31 Heat of formation + Delta-G solvation = -68.804202 kcal Electronic energy + Delta-G solvation = -33017.634972 eV Core-core repulsion = 29054.833712 eV Total energy + Delta-G solvation = -3962.801260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30001 -39.58184 -38.59142 -37.75836 -36.88060 -34.27980 -32.97131 -32.86759 -31.68535 -30.28482 -28.07728 -27.97405 -26.79239 -26.17524 -25.29994 -23.63067 -23.29474 -22.82330 -21.66344 -20.58295 -19.71034 -18.78816 -17.80522 -17.39008 -17.07834 -16.77024 -16.62925 -16.45864 -16.03076 -15.77294 -15.58834 -15.23226 -14.95472 -14.86638 -14.72639 -14.48862 -14.45600 -14.04021 -13.83264 -13.64424 -13.42681 -13.06595 -13.03857 -12.92689 -12.84661 -12.74947 -12.67560 -12.51442 -12.32451 -12.18139 -12.09914 -11.97804 -11.91719 -11.81297 -11.69081 -11.54110 -11.35746 -11.04084 -10.87061 -10.69690 -10.51893 -10.19051 -9.61911 -8.77821 -7.87136 -5.33613 1.40846 1.43369 1.53785 1.74376 2.01660 2.48609 2.79844 3.24656 3.36493 3.59422 3.74098 3.77433 3.91264 3.98394 4.02247 4.05022 4.20120 4.22301 4.30170 4.34150 4.36792 4.47202 4.50843 4.53968 4.55928 4.62548 4.65032 4.65653 4.69774 4.73884 4.78361 4.86637 4.89134 4.90791 4.92377 4.99373 5.06597 5.13939 5.14318 5.22780 5.25537 5.31641 5.37441 5.41990 5.47113 5.48731 5.55652 5.62522 5.65894 5.71182 6.26926 6.29152 6.56277 7.10912 7.31357 7.83167 8.26120 9.15250 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003569 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.187015 B = 7843.519779 C = 8573.954900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.051 3.949 4 C -0.068 4.068 5 C 0.527 3.473 6 O -0.582 6.582 7 N -0.604 5.604 8 C 0.084 3.916 9 C -0.123 4.123 10 C -0.121 4.121 11 C 0.171 3.829 12 H 0.041 0.959 13 N -0.609 5.609 14 C 0.178 3.822 15 C -0.267 4.267 16 H 0.058 0.942 17 C -0.044 4.044 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.286 1.286 23 C 0.116 3.884 24 C -0.080 4.080 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.011 0.989 41 H 0.008 0.992 42 H 0.032 0.968 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.024 0.976 53 H 0.087 0.913 54 H 0.093 0.907 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 9.400 23.174 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.025 4.025 4 C -0.071 4.071 5 C 0.317 3.683 6 O -0.462 6.462 7 N -0.336 5.336 8 C -0.036 4.036 9 C -0.162 4.162 10 C -0.161 4.161 11 C 0.063 3.937 12 H 0.059 0.941 13 N -0.331 5.331 14 C 0.034 3.966 15 C -0.398 4.398 16 H 0.076 0.924 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.213 1.213 23 C -0.009 4.009 24 C -0.118 4.118 25 C -0.179 4.179 26 C -0.150 4.150 27 C -0.160 4.160 28 C -0.152 4.152 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.043 0.957 53 H 0.105 0.895 54 H 0.111 0.889 55 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.256 8.690 23.019 27.057 hybrid contribution 1.024 -0.948 -1.393 1.972 sum -10.232 7.742 21.625 25.145 Atomic orbital electron populations 1.22881 0.79444 1.03319 1.01213 1.87937 1.21431 1.28557 1.95647 1.23179 0.90148 0.85452 1.03675 1.20932 0.95731 0.98159 0.92296 1.21050 0.78328 0.83561 0.85359 1.90572 1.39457 1.29187 1.87022 1.48148 1.55001 1.25463 1.05006 1.22781 0.94779 0.83392 1.02690 1.22008 1.01620 0.98666 0.93886 1.21915 0.99454 0.96865 0.97829 1.20678 0.96230 0.91571 0.85229 0.94109 1.44090 1.03141 1.67022 1.18860 1.20480 0.87521 0.96202 0.92431 1.19443 0.85182 1.44235 0.90891 0.92413 1.25616 1.00722 1.01662 0.95994 1.70224 1.35269 1.51231 1.00829 0.85301 0.80070 0.77759 0.77911 1.19891 1.21546 1.21311 1.21818 0.99064 0.95561 0.84462 1.21212 0.95500 0.99145 0.95960 1.21835 0.95889 0.97977 1.02165 1.21508 0.99717 0.95005 0.98745 1.21536 0.95970 1.00859 0.97615 1.21969 0.95116 0.92432 1.05656 0.91948 0.93292 0.89871 0.90228 0.88959 0.90192 0.85033 0.91689 0.87503 0.93911 0.92439 0.97044 0.97310 0.95010 0.94123 0.93198 0.92186 0.88845 0.93581 0.92600 0.92127 0.92827 0.89542 0.95673 0.89462 0.88863 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.19 9.61 -148.98 -1.43 -10.62 16 3 C 0.05 0.83 4.45 71.98 0.32 1.15 16 4 C -0.07 -1.43 0.34 -52.93 -0.02 -1.45 16 5 C 0.53 16.78 4.77 87.66 0.42 17.20 16 6 O -0.58 -24.44 12.89 -3.03 -0.04 -24.48 16 7 N -0.60 -18.40 2.96 -818.04 -2.42 -20.82 16 8 C 0.08 1.72 4.01 86.51 0.35 2.07 16 9 C -0.12 -2.78 5.97 30.82 0.18 -2.59 16 10 C -0.12 -4.16 5.14 30.62 0.16 -4.00 16 11 C 0.17 7.27 2.74 45.07 0.12 7.39 16 12 H 0.04 1.89 7.86 -2.38 -0.02 1.87 16 13 N -0.61 -31.79 2.81 -702.34 -1.97 -33.77 16 14 C 0.18 9.04 8.05 127.77 1.03 10.07 16 15 C -0.27 -15.54 9.57 84.03 0.80 -14.74 16 16 H 0.06 3.39 7.85 -2.91 -0.02 3.37 16 17 C -0.04 -2.56 5.00 84.86 0.42 -2.13 16 18 N -0.93 -55.93 10.94 21.65 0.24 -55.69 16 19 Si 0.96 47.03 29.59 68.60 2.03 49.06 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 C 0.12 4.56 5.79 86.36 0.50 5.06 16 24 C -0.08 -1.80 4.23 30.59 0.13 -1.67 16 25 C -0.14 -3.55 5.63 30.59 0.17 -3.38 16 26 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 27 C -0.12 -2.42 5.70 30.60 0.17 -2.24 16 28 C -0.11 -1.70 4.45 30.60 0.14 -1.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.07 4.45 -2.39 -0.01 1.06 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.46 8.01 -2.39 -0.02 1.44 16 35 H 0.13 1.80 2.53 -2.38 -0.01 1.79 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 1.95 7.71 -2.39 -0.02 1.93 16 40 H 0.01 0.62 7.34 -2.39 -0.02 0.60 16 41 H 0.01 0.46 7.42 -2.39 -0.02 0.44 16 42 H 0.03 1.37 6.36 -2.39 -0.02 1.36 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.05 2.34 7.00 -2.38 -0.02 2.32 16 45 H 0.06 2.33 6.50 -2.39 -0.02 2.31 16 46 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 48 H 0.06 1.93 5.32 -2.39 -0.01 1.92 16 49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.02 0.70 7.22 -2.39 -0.02 0.68 16 53 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.09 1.18 4.83 -2.39 -0.01 1.17 16 55 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -77.30 395.06 3.59 -73.71 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.86 Total: 13.81 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.33 Total: 8.80 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.16 Total: -110.28 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.47 Total: -35.10 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.30 3.59 -73.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317375512.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.904 kcal (2) G-P(sol) polarization free energy of solvation -77.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds