Wall clock time and date at job start Tue Mar 31 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99913 * 2 1 4 4 C 1.53004 * 109.46851 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47178 * 304.79353 * 4 3 2 6 6 O 1.21280 * 119.99838 * 117.65390 * 5 4 3 7 7 N 1.34773 * 120.00042 * 297.65616 * 5 4 3 8 8 C 1.46923 * 120.63249 * 5.39073 * 7 5 4 9 9 C 1.53188 * 108.78288 * 233.58811 * 8 7 5 10 10 C 1.53038 * 109.31188 * 305.36957 * 9 8 7 11 11 C 1.53044 * 109.54089 * 61.35838 * 10 9 8 12 12 H 1.08997 * 109.49382 * 58.59098 * 11 10 9 13 13 N 1.46500 * 109.49817 * 178.65036 * 11 10 9 14 14 C 1.46503 * 119.99661 * 60.00189 * 13 11 10 15 15 C 1.36936 * 120.00274 * 240.00087 * 13 11 10 16 16 H 1.07999 * 119.99627 * 34.43823 * 15 13 11 17 17 C 1.38808 * 120.00052 * 214.43618 * 15 13 11 18 18 N 1.31618 * 120.00263 * 5.25946 * 17 15 13 19 19 Si 1.86801 * 119.99778 * 185.25571 * 17 15 13 20 20 H 1.48492 * 109.47283 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46874 * 119.99970 * 19 17 15 22 22 H 1.48496 * 109.47339 * 239.99612 * 19 17 15 23 23 C 1.46929 * 120.63306 * 185.11851 * 7 5 4 24 24 C 1.52998 * 109.47053 * 184.79236 * 4 3 2 25 25 C 1.52993 * 109.47327 * 180.02562 * 24 4 3 26 26 C 1.52999 * 109.47209 * 59.99824 * 25 24 4 27 27 C 1.52998 * 109.47120 * 300.00303 * 26 25 24 28 28 C 1.52996 * 109.47148 * 60.00097 * 27 26 25 29 29 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46693 * 299.99834 * 1 2 3 31 31 H 1.08993 * 109.47293 * 59.99807 * 1 2 3 32 32 H 1.08998 * 109.46678 * 60.00275 * 3 2 1 33 33 H 1.08992 * 109.47104 * 299.99723 * 3 2 1 34 34 H 1.09005 * 109.58899 * 353.37956 * 8 7 5 35 35 H 1.09007 * 109.58533 * 113.79535 * 8 7 5 36 36 H 1.09006 * 109.49461 * 65.31413 * 9 8 7 37 37 H 1.08998 * 109.49985 * 185.41275 * 9 8 7 38 38 H 1.09003 * 109.46270 * 181.38163 * 10 9 8 39 39 H 1.09005 * 109.45775 * 301.35544 * 10 9 8 40 40 H 1.08997 * 109.46636 * 85.02762 * 14 13 11 41 41 H 1.09000 * 109.46783 * 205.02522 * 14 13 11 42 42 H 1.08996 * 109.47536 * 325.02551 * 14 13 11 43 43 H 0.96997 * 119.99975 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.58514 * 246.20359 * 23 7 5 45 45 H 1.09006 * 109.58467 * 6.62326 * 23 7 5 46 46 H 1.09003 * 109.47167 * 60.00160 * 24 4 3 47 47 H 1.09005 * 109.46928 * 300.00184 * 24 4 3 48 48 H 1.09005 * 109.47146 * 299.99903 * 25 24 4 49 49 H 1.09001 * 109.47093 * 180.02562 * 25 24 4 50 50 H 1.09005 * 109.46712 * 60.00455 * 26 25 24 51 51 H 1.08997 * 109.47407 * 179.97438 * 26 25 24 52 52 H 1.08997 * 109.46744 * 179.97438 * 27 26 25 53 53 H 1.08996 * 109.46916 * 299.99714 * 27 26 25 54 54 H 1.09001 * 109.46913 * 179.97438 * 28 27 26 55 55 H 1.08996 * 109.47525 * 59.99990 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9727 0.3366 1.1658 6 8 4.5535 -0.7101 0.9705 7 7 3.7182 0.7411 2.4259 8 6 2.9140 1.9446 2.6778 9 6 3.7033 2.8817 3.5973 10 6 4.1127 2.1233 4.8620 11 6 5.0140 0.9458 4.4835 12 1 5.8938 1.3157 3.9570 13 7 5.4315 0.2397 5.6973 14 6 4.4258 -0.3548 6.5814 15 6 6.7616 0.1353 6.0055 16 1 7.4372 0.9419 5.7620 17 6 7.2415 -1.0072 6.6310 18 7 6.4408 -2.0317 6.8346 19 14 9.0239 -1.0906 7.1837 20 1 9.7084 0.1819 6.8414 21 1 9.0773 -1.3012 8.6528 22 1 9.7029 -2.2187 6.4970 23 6 4.2348 -0.0163 3.5741 24 6 4.1574 2.5773 0.1199 25 6 5.6826 2.4566 0.1186 26 6 6.1415 1.8043 -1.1871 27 6 5.5195 0.4117 -1.3076 28 6 3.9943 0.5325 -1.3064 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 2.7055 2.4489 1.7342 35 1 1.9771 1.6640 3.1592 36 1 4.5955 3.2334 3.0792 37 1 3.0805 3.7339 3.8696 38 1 4.6534 2.7947 5.5291 39 1 3.2212 1.7505 5.3664 40 1 4.1655 -1.3491 6.2186 41 1 4.8291 -0.4305 7.5912 42 1 3.5348 0.2729 6.5921 43 1 6.7761 -2.8299 7.2720 44 1 3.4036 -0.4536 4.1271 45 1 4.8981 -0.8064 3.2220 46 1 3.8302 3.0421 1.0499 47 1 3.8411 3.1907 -0.7239 48 1 5.9992 1.8430 0.9621 49 1 6.1257 3.4487 0.2049 50 1 5.8249 2.4179 -2.0306 51 1 7.2281 1.7187 -1.1883 52 1 5.8461 -0.0528 -2.2381 53 1 5.8361 -0.2018 -0.4642 54 1 3.5512 -0.4597 -1.3927 55 1 3.6777 1.1459 -2.1499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317375514.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:36 Heat of formation + Delta-G solvation = -74.087163 kcal Electronic energy + Delta-G solvation = -33193.318631 eV Core-core repulsion = 29230.288285 eV Total energy + Delta-G solvation = -3963.030346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.29169 -39.52290 -38.57572 -37.81083 -36.84788 -34.24594 -33.03140 -32.82690 -31.69137 -30.28231 -28.03844 -27.99904 -26.78597 -26.14849 -25.30256 -23.61974 -23.29410 -22.83309 -21.69726 -20.52731 -19.65600 -18.76892 -17.79250 -17.39491 -17.10390 -16.76677 -16.69400 -16.42804 -16.10613 -15.71390 -15.50816 -15.26572 -14.94481 -14.84997 -14.80259 -14.43181 -14.37300 -14.00076 -13.89904 -13.56468 -13.51338 -13.08123 -12.93383 -12.88058 -12.87356 -12.83270 -12.66617 -12.49975 -12.27145 -12.20770 -12.11199 -12.08375 -11.94586 -11.76221 -11.65261 -11.51848 -11.33693 -11.05432 -10.89632 -10.66653 -10.56228 -10.21861 -9.58236 -8.62342 -7.90254 -5.48532 1.40538 1.42609 1.52911 1.78119 2.05258 2.46378 2.79380 3.26260 3.37196 3.62673 3.74302 3.76230 3.93200 3.98665 4.04203 4.07565 4.18188 4.26078 4.30245 4.35635 4.37211 4.47149 4.48625 4.52963 4.55011 4.61810 4.63975 4.66039 4.71009 4.75789 4.80876 4.88252 4.89601 4.91740 4.97569 5.00489 5.07178 5.13979 5.17210 5.19821 5.24181 5.31599 5.35282 5.43148 5.45587 5.53299 5.58512 5.61678 5.63259 5.66572 6.26380 6.35947 6.60120 7.12839 7.34702 7.80925 8.30311 9.13568 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003815 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.679265 B = 7338.596997 C = 7999.158241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.055 3.945 4 C -0.068 4.068 5 C 0.527 3.473 6 O -0.590 6.590 7 N -0.604 5.604 8 C 0.081 3.919 9 C -0.124 4.124 10 C -0.121 4.121 11 C 0.171 3.829 12 H 0.042 0.958 13 N -0.606 5.606 14 C 0.179 3.821 15 C -0.272 4.272 16 H 0.063 0.937 17 C -0.042 4.042 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.294 1.294 23 C 0.120 3.880 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.137 4.137 28 C -0.083 4.083 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.060 0.940 40 H -0.012 1.012 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.032 0.968 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.021 0.979 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.052 0.948 52 H 0.062 0.938 53 H 0.042 0.958 54 H 0.043 0.957 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 16.913 -17.285 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.021 4.021 4 C -0.072 4.072 5 C 0.317 3.683 6 O -0.470 6.470 7 N -0.337 5.337 8 C -0.040 4.040 9 C -0.162 4.162 10 C -0.161 4.161 11 C 0.063 3.937 12 H 0.061 0.939 13 N -0.329 5.329 14 C 0.034 3.966 15 C -0.402 4.402 16 H 0.081 0.919 17 C -0.239 4.239 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.211 1.211 22 H -0.221 1.221 23 C -0.005 4.005 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.120 4.120 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.006 0.994 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.114 0.886 47 H 0.134 0.866 48 H 0.040 0.960 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.061 0.939 54 H 0.062 0.938 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.104 16.049 -17.273 26.976 hybrid contribution 1.154 -1.467 0.948 2.093 sum -11.951 14.582 -16.325 24.940 Atomic orbital electron populations 1.22889 0.79359 1.03245 1.01371 1.87974 1.21577 1.28700 1.95645 1.23146 0.89966 0.85342 1.03670 1.20968 0.95905 0.97083 0.93221 1.21056 0.77372 0.85513 0.84359 1.90607 1.44491 1.26697 1.85212 1.48197 1.52659 1.28046 1.04751 1.22731 0.93910 0.84909 1.02415 1.21953 1.01147 0.98278 0.94837 1.21889 0.99228 0.96536 0.98404 1.20868 0.95009 0.91669 0.86152 0.93923 1.44039 1.02655 1.64774 1.21437 1.20448 0.89652 0.93494 0.93033 1.19465 0.85819 0.98821 1.36109 0.91940 1.26094 1.01496 0.94696 1.01578 1.70174 1.36158 1.05108 1.46433 0.85216 0.80235 0.77719 0.77389 1.18762 1.21065 1.22128 1.21910 0.96831 0.95061 0.86706 1.22002 0.94957 0.92569 1.05749 1.21536 0.96128 1.01251 0.97071 1.21520 0.99633 0.95579 0.98270 1.21736 0.96045 0.98143 1.01498 1.21261 0.95372 1.00302 0.95103 0.90145 0.92981 0.91825 0.90011 0.88812 0.85025 0.90691 0.91270 0.86916 0.92239 0.92151 0.99351 0.95821 0.94895 0.94108 0.93517 0.94877 0.88576 0.86566 0.95975 0.89232 0.89125 0.92910 0.91894 0.93915 0.93808 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.14 9.72 -148.98 -1.45 -11.58 16 3 C 0.05 0.94 4.47 71.98 0.32 1.26 16 4 C -0.07 -1.55 0.34 -52.93 -0.02 -1.57 16 5 C 0.53 18.33 4.46 87.66 0.39 18.72 16 6 O -0.59 -27.40 13.19 -3.03 -0.04 -27.44 16 7 N -0.60 -19.93 2.96 -818.08 -2.42 -22.35 16 8 C 0.08 1.71 4.32 86.36 0.37 2.08 16 9 C -0.12 -2.56 5.74 30.67 0.18 -2.38 16 10 C -0.12 -3.80 5.10 30.62 0.16 -3.65 16 11 C 0.17 7.32 2.76 45.21 0.12 7.45 16 12 H 0.04 1.97 7.89 -2.39 -0.02 1.96 16 13 N -0.61 -31.77 2.78 -701.55 -1.95 -33.72 16 14 C 0.18 9.12 8.00 127.77 1.02 10.14 16 15 C -0.27 -15.67 9.45 84.03 0.79 -14.88 16 16 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 17 C -0.04 -2.49 5.17 84.86 0.44 -2.05 16 18 N -0.93 -58.08 11.12 21.65 0.24 -57.84 16 19 Si 0.97 46.95 29.56 68.60 2.03 48.98 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 23 C 0.12 5.23 5.79 86.51 0.50 5.73 16 24 C -0.12 -1.82 4.41 30.59 0.13 -1.69 16 25 C -0.12 -2.58 5.70 30.59 0.17 -2.40 16 26 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 27 C -0.14 -3.70 5.63 30.59 0.17 -3.53 16 28 C -0.08 -1.98 4.26 30.59 0.13 -1.85 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.09 4.80 -2.39 -0.01 1.08 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.13 1.88 2.35 -2.38 -0.01 1.87 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.45 7.69 -2.38 -0.02 1.43 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.87 6.75 -2.38 -0.02 1.86 16 40 H -0.01 -0.67 7.73 -2.39 -0.02 -0.69 16 41 H 0.02 1.28 7.26 -2.39 -0.02 1.26 16 42 H 0.03 1.41 6.48 -2.39 -0.02 1.39 16 43 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.05 2.08 7.53 -2.39 -0.02 2.06 16 45 H 0.03 1.78 7.04 -2.38 -0.02 1.77 16 46 H 0.10 1.28 4.03 -2.39 -0.01 1.27 16 47 H 0.12 0.96 8.14 -2.38 -0.02 0.95 16 48 H 0.02 0.66 7.22 -2.38 -0.02 0.64 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 50 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 51 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.04 1.60 5.60 -2.39 -0.01 1.59 16 54 H 0.04 1.31 7.75 -2.39 -0.02 1.29 16 55 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -81.73 395.28 3.59 -78.14 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.86 Total: 14.91 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.32 Total: 10.89 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.13 Total: -113.90 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.49 Total: -39.02 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -81.73 3.59 -78.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317375514.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.053 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds