Wall clock time and date at job start Tue Mar 31 2020 22:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99962 * 2 1 4 4 C 1.53002 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47213 * 176.28178 * 4 3 2 6 6 C 1.50705 * 112.84928 * 301.53079 * 5 4 3 7 7 O 1.21275 * 120.00200 * 112.34315 * 6 5 4 8 8 N 1.34782 * 119.99798 * 292.34884 * 6 5 4 9 9 C 1.46493 * 119.99846 * 174.95353 * 8 6 5 10 10 C 1.53003 * 109.47018 * 180.02562 * 9 8 6 11 11 C 1.53010 * 109.47021 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46737 * 174.73869 * 11 10 9 13 13 H 1.09004 * 109.87343 * 305.21043 * 12 11 10 14 14 C 1.54319 * 109.87882 * 184.19841 * 12 11 10 15 15 C 1.55165 * 102.94067 * 218.39029 * 14 12 11 16 16 C 1.54903 * 101.58007 * 35.49984 * 15 14 12 17 17 N 1.47021 * 109.88336 * 66.22734 * 12 11 10 18 18 C 1.36934 * 125.65129 * 298.31221 * 17 12 11 19 19 H 1.07995 * 119.99842 * 340.35774 * 18 17 12 20 20 C 1.38815 * 119.99942 * 160.35293 * 18 17 12 21 21 N 1.31622 * 119.99383 * 160.10614 * 20 18 17 22 22 Si 1.86794 * 120.00125 * 340.11234 * 20 18 17 23 23 H 1.48498 * 109.47159 * 88.09669 * 22 20 18 24 24 H 1.48499 * 109.47103 * 208.09418 * 22 20 18 25 25 H 1.48495 * 109.47419 * 328.09503 * 22 20 18 26 26 C 1.53776 * 113.69424 * 72.79605 * 5 4 3 27 27 C 1.53781 * 87.07892 * 89.12805 * 26 5 4 28 28 C 1.53781 * 113.61577 * 170.33806 * 5 4 3 29 29 H 1.09005 * 109.47059 * 59.99610 * 1 2 3 30 30 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46910 * 300.00041 * 1 2 3 32 32 H 1.09005 * 109.46865 * 60.00416 * 3 2 1 33 33 H 1.09000 * 109.47326 * 300.00641 * 3 2 1 34 34 H 1.08999 * 109.46535 * 56.27651 * 4 3 2 35 35 H 1.09005 * 109.46732 * 296.27872 * 4 3 2 36 36 H 0.96998 * 119.99714 * 354.95076 * 8 6 5 37 37 H 1.09005 * 109.47428 * 299.99397 * 9 8 6 38 38 H 1.08999 * 109.47578 * 59.99534 * 9 8 6 39 39 H 1.08997 * 109.47049 * 299.99613 * 10 9 8 40 40 H 1.08990 * 109.47353 * 59.99948 * 10 9 8 41 41 H 1.08993 * 109.47139 * 294.73791 * 11 10 9 42 42 H 1.08998 * 109.47131 * 54.74121 * 11 10 9 43 43 H 1.09000 * 110.72538 * 336.75039 * 14 12 11 44 44 H 1.09000 * 110.72686 * 100.02779 * 14 12 11 45 45 H 1.08999 * 111.00063 * 153.57417 * 15 14 12 46 46 H 1.08997 * 111.00363 * 277.38539 * 15 14 12 47 47 H 1.09005 * 110.36704 * 81.82901 * 16 15 14 48 48 H 1.09006 * 110.36671 * 204.14838 * 16 15 14 49 49 H 0.97008 * 119.99704 * 180.02562 * 21 20 18 50 50 H 1.09002 * 113.62184 * 203.67457 * 26 5 4 51 51 H 1.09000 * 113.61958 * 334.58113 * 26 5 4 52 52 H 1.09000 * 113.61561 * 270.88591 * 27 26 5 53 53 H 1.09003 * 113.68849 * 139.99185 * 27 26 5 54 54 H 1.09002 * 113.61249 * 25.34265 * 28 5 4 55 55 H 1.08993 * 113.61472 * 156.16680 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1575 2.5793 -0.0942 6 6 3.7253 3.3314 -1.3266 7 8 3.0222 4.3139 -1.2220 8 7 4.1202 2.9119 -2.5451 9 6 3.6117 3.5749 -3.7483 10 6 4.2113 2.9100 -4.9890 11 6 3.6796 3.6021 -6.2458 12 6 4.3775 3.0256 -7.4793 13 1 5.4586 3.1053 -7.3646 14 6 3.9261 3.7888 -8.7423 15 6 3.8186 2.6654 -9.8073 16 6 3.3056 1.4776 -8.9556 17 7 3.9962 1.6168 -7.6569 18 6 4.2410 0.6054 -6.7669 19 1 5.0071 0.7217 -6.0147 20 6 3.5042 -0.5693 -6.8314 21 7 3.9665 -1.6675 -6.2720 22 14 1.8571 -0.5917 -7.7122 23 1 2.0693 -0.8906 -9.1512 24 1 0.9892 -1.6367 -7.1123 25 1 1.2034 0.7343 -7.5732 26 6 4.0357 3.3985 1.2015 27 6 5.3734 2.7726 1.6300 28 6 5.6783 2.5922 0.1335 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8522 0.5874 -0.8556 35 1 3.8621 0.7022 0.9207 36 1 4.7412 2.1710 -2.6252 37 1 2.5255 3.4884 -3.7794 38 1 3.8918 4.6281 -3.7288 39 1 5.2974 2.9961 -4.9583 40 1 3.9307 1.8570 -5.0084 41 1 2.6054 3.4358 -6.3253 42 1 3.8781 4.6720 -6.1829 43 1 2.9573 4.2617 -8.5816 44 1 4.6729 4.5270 -9.0346 45 1 3.0995 2.9297 -10.5826 46 1 4.7937 2.4436 -10.2410 47 1 2.2259 1.5452 -8.8216 48 1 3.5717 0.5308 -9.4257 49 1 3.4519 -2.4885 -6.3174 50 1 4.0883 4.4757 1.0438 51 1 3.1944 3.1021 1.8281 52 1 5.2625 1.8320 2.1695 53 1 6.0434 3.4714 2.1309 54 1 6.1631 1.6448 -0.1022 55 1 6.1801 3.4482 -0.3174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317436543.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:02 Heat of formation + Delta-G solvation = -75.366024 kcal Electronic energy + Delta-G solvation = -31020.518653 eV Core-core repulsion = 27057.432852 eV Total energy + Delta-G solvation = -3963.085802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79835 -39.79948 -39.12355 -38.54233 -36.56994 -34.58410 -33.89383 -32.55052 -31.72510 -30.08355 -28.01175 -26.97558 -26.51488 -26.24943 -25.29115 -23.75292 -23.11235 -22.02720 -21.76756 -20.77236 -19.55494 -18.78688 -18.11874 -17.56397 -17.41652 -17.25343 -17.04208 -16.77654 -16.42663 -16.11986 -15.78995 -15.52327 -15.08285 -14.98328 -14.90236 -14.42615 -14.31642 -13.90580 -13.76268 -13.63580 -13.44281 -13.38662 -13.26296 -13.08495 -12.75889 -12.64596 -12.61424 -12.42032 -12.38844 -12.21118 -12.10843 -12.07062 -11.80985 -11.61696 -11.44069 -11.41204 -11.38389 -11.22250 -11.10657 -10.73496 -10.69812 -10.55976 -10.09449 -8.93619 -8.09591 -5.33176 1.28739 1.38016 1.43756 1.56103 2.22094 2.45234 2.63461 3.13979 3.35614 3.37336 3.55090 3.76843 3.84729 3.87524 3.91897 3.96262 4.02697 4.12296 4.15774 4.19086 4.25308 4.33754 4.41218 4.44509 4.45221 4.50353 4.58564 4.67722 4.74022 4.75206 4.75801 4.79249 4.80530 4.85772 4.91337 4.94313 4.97264 5.01869 5.07188 5.13298 5.15938 5.19246 5.22116 5.26722 5.38714 5.42594 5.49450 5.61948 5.63740 5.82569 6.09112 6.19363 6.52366 6.85689 7.18182 7.64254 8.23450 9.09700 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.003289 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.645497 B = 8510.799923 C = 9886.281573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.063 3.937 4 C -0.085 4.085 5 C -0.106 4.106 6 C 0.523 3.477 7 O -0.584 6.584 8 N -0.720 5.720 9 C 0.130 3.870 10 C -0.127 4.127 11 C -0.111 4.111 12 C 0.150 3.850 13 H 0.043 0.957 14 C -0.117 4.117 15 C -0.121 4.121 16 C 0.094 3.906 17 N -0.621 5.621 18 C -0.200 4.200 19 H 0.078 0.922 20 C -0.037 4.037 21 N -0.957 5.957 22 Si 0.931 3.069 23 H -0.282 1.282 24 H -0.319 1.319 25 H -0.269 1.269 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.121 4.121 29 H 0.033 0.967 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.409 0.591 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.019 0.981 48 H 0.033 0.967 49 H 0.256 0.744 50 H 0.077 0.923 51 H 0.077 0.923 52 H 0.099 0.901 53 H 0.085 0.915 54 H 0.090 0.910 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 11.356 11.276 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.014 4.014 4 C -0.123 4.123 5 C -0.109 4.109 6 C 0.311 3.689 7 O -0.464 6.464 8 N -0.370 5.370 9 C 0.007 3.993 10 C -0.164 4.164 11 C -0.151 4.151 12 C 0.045 3.955 13 H 0.061 0.939 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.031 4.031 17 N -0.347 5.347 18 C -0.329 4.329 19 H 0.096 0.904 20 C -0.231 4.231 21 N -0.605 5.605 22 Si 0.762 3.238 23 H -0.209 1.209 24 H -0.249 1.249 25 H -0.195 1.195 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.244 0.756 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.036 0.964 48 H 0.051 0.949 49 H 0.065 0.935 50 H 0.096 0.904 51 H 0.096 0.904 52 H 0.118 0.882 53 H 0.104 0.896 54 H 0.109 0.891 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.640 11.683 11.397 16.334 hybrid contribution -1.257 -0.841 -0.658 1.649 sum -0.617 10.842 10.739 15.273 Atomic orbital electron populations 1.22923 0.79734 1.03909 1.00514 1.87827 1.21335 1.28365 1.95510 1.22512 0.94724 0.84287 0.99841 1.21217 0.92339 0.93696 1.05008 1.22174 0.99928 0.95846 0.92991 1.20963 0.78810 0.83981 0.85150 1.90633 1.39881 1.28527 1.87380 1.46113 1.48257 1.36954 1.05645 1.21285 0.97504 0.96612 0.83925 1.21888 1.00124 1.01601 0.92816 1.21824 0.99333 0.99401 0.94519 1.21281 0.96967 0.82928 0.94342 0.93903 1.22621 1.02452 0.97062 0.93367 1.22678 1.01864 0.94177 0.97164 1.22157 0.95094 0.98516 0.87297 1.45151 1.67936 1.04639 1.16986 1.18598 1.12591 0.92054 1.09650 0.90427 1.25455 1.01059 0.95843 1.00753 1.69909 1.39098 1.00029 1.51465 0.86208 0.83540 0.75962 0.78066 1.20874 1.24858 1.19477 1.22867 0.99595 0.99267 0.93524 1.22818 0.95977 1.02128 0.95267 1.22991 0.91165 1.03762 0.97986 0.94832 0.88189 0.92229 0.91687 0.96022 0.91130 0.87497 0.75551 0.94039 0.91496 0.91650 0.91106 0.93997 0.90018 0.90653 0.88382 0.89056 0.90722 0.96361 0.94891 0.93471 0.90400 0.90422 0.88224 0.89589 0.89096 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.82 16 2 O -0.41 -11.88 10.70 -148.98 -1.59 -13.48 16 3 C 0.06 1.67 5.65 71.98 0.41 2.08 16 4 C -0.09 -1.95 4.95 30.59 0.15 -1.80 16 5 C -0.11 -2.36 0.79 -52.40 -0.04 -2.40 16 6 C 0.52 15.60 5.56 87.66 0.49 16.09 16 7 O -0.58 -21.32 16.21 -3.01 -0.05 -21.37 16 8 N -0.72 -21.37 5.55 -463.06 -2.57 -23.94 16 9 C 0.13 4.15 5.68 86.38 0.49 4.64 16 10 C -0.13 -4.31 4.46 30.60 0.14 -4.18 16 11 C -0.11 -3.60 4.74 30.60 0.15 -3.45 16 12 C 0.15 5.23 3.24 45.34 0.15 5.37 16 13 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 14 C -0.12 -3.15 6.48 31.78 0.21 -2.95 16 15 C -0.12 -3.56 7.09 31.99 0.23 -3.34 16 16 C 0.09 3.88 4.72 86.79 0.41 4.29 16 17 N -0.62 -27.91 2.94 -667.45 -1.96 -29.87 16 18 C -0.20 -10.69 8.11 84.03 0.68 -10.01 16 19 H 0.08 4.37 6.89 -2.91 -0.02 4.35 16 20 C -0.04 -2.15 5.46 84.86 0.46 -1.69 16 21 N -0.96 -59.26 13.97 21.65 0.30 -58.96 16 22 Si 0.93 47.56 24.31 68.60 1.67 49.22 16 23 H -0.28 -13.88 6.70 99.48 0.67 -13.21 16 24 H -0.32 -16.86 7.11 99.48 0.71 -16.16 16 25 H -0.27 -13.32 6.27 99.48 0.62 -12.70 16 26 C -0.11 -2.20 6.77 31.12 0.21 -1.99 16 27 C -0.12 -1.72 7.73 31.12 0.24 -1.48 16 28 C -0.12 -2.06 7.22 31.12 0.22 -1.84 16 29 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.50 7.33 -2.38 -0.02 1.48 16 33 H 0.02 0.68 7.23 -2.39 -0.02 0.67 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.96 7.30 -2.38 -0.02 1.95 16 36 H 0.41 11.27 8.48 -92.71 -0.79 10.48 16 37 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 3.05 5.18 -2.39 -0.01 3.03 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 1.90 7.85 -2.39 -0.02 1.88 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.02 0.81 5.34 -2.38 -0.01 0.79 16 48 H 0.03 1.50 6.69 -2.38 -0.02 1.48 16 49 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 50 H 0.08 1.71 7.76 -2.39 -0.02 1.69 16 51 H 0.08 1.38 7.29 -2.39 -0.02 1.37 16 52 H 0.10 1.12 7.60 -2.39 -0.02 1.10 16 53 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 55 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 Total: -1.00 -71.62 416.85 1.57 -70.05 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.06 Total: 29.15 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.83 Total: -0.81 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.23 Total: -112.77 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.64 Total: -34.84 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.22 kcal Total: -71.62 1.57 -70.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317436543.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.314 kcal (2) G-P(sol) polarization free energy of solvation -71.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds