Wall clock time and date at job start Tue Mar 31 2020 22:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00242 * 2 1 4 4 H 1.08003 * 120.00174 * 202.82102 * 3 2 1 5 5 C 1.38815 * 119.99942 * 22.82088 * 3 2 1 6 6 N 1.31625 * 119.99856 * 13.50852 * 5 3 2 7 7 Si 1.86795 * 120.00151 * 193.51050 * 5 3 2 8 8 H 1.48500 * 109.47263 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47385 * 120.00112 * 7 5 3 10 10 H 1.48509 * 109.46844 * 240.00062 * 7 5 3 11 11 C 1.46506 * 120.00090 * 180.27377 * 2 1 3 12 12 C 1.53009 * 109.46574 * 89.99847 * 11 2 1 13 13 H 1.08996 * 110.88863 * 302.57308 * 12 11 2 14 14 C 1.55157 * 111.00211 * 66.45895 * 12 11 2 15 15 C 1.54324 * 102.93993 * 153.57174 * 14 12 11 16 16 N 1.47019 * 107.27340 * 337.80419 * 15 14 12 17 17 C 1.34776 * 125.65043 * 178.98570 * 16 15 14 18 18 O 1.21284 * 120.00183 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99933 * 359.97438 * 17 16 15 20 20 C 1.52999 * 109.47366 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47306 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47178 * 180.02562 * 21 20 19 23 23 C 1.53179 * 109.54491 * 294.82098 * 22 21 20 24 24 C 1.53102 * 109.16129 * 183.23984 * 23 22 21 25 25 O 1.42899 * 109.48347 * 57.47360 * 24 23 22 26 26 C 1.42906 * 114.10267 * 298.88941 * 25 24 23 27 27 C 1.53089 * 109.41217 * 61.15728 * 26 25 24 28 28 C 1.47426 * 108.70116 * 358.94304 * 16 15 14 29 29 H 1.08998 * 109.47011 * 274.86285 * 1 2 3 30 30 H 1.08999 * 109.47109 * 34.85874 * 1 2 3 31 31 H 1.08993 * 109.46949 * 154.85756 * 1 2 3 32 32 H 0.96997 * 119.99835 * 179.97438 * 6 5 3 33 33 H 1.08991 * 109.47309 * 209.99723 * 11 2 1 34 34 H 1.09000 * 109.46643 * 330.00514 * 11 2 1 35 35 H 1.08994 * 110.71987 * 271.93515 * 14 12 11 36 36 H 1.09004 * 110.72172 * 35.20978 * 14 12 11 37 37 H 1.09001 * 109.88068 * 97.22417 * 15 14 12 38 38 H 1.09004 * 109.88272 * 218.23502 * 15 14 12 39 39 H 1.08998 * 109.47114 * 300.00018 * 19 17 16 40 40 H 1.09002 * 109.47265 * 60.00138 * 19 17 16 41 41 H 1.08998 * 109.47228 * 300.00205 * 20 19 17 42 42 H 1.09004 * 109.46941 * 60.00402 * 20 19 17 43 43 H 1.09002 * 109.47481 * 299.99915 * 21 20 19 44 44 H 1.08994 * 109.47295 * 60.00096 * 21 20 19 45 45 H 1.09004 * 109.54610 * 54.99935 * 22 21 20 46 46 H 1.08994 * 109.52348 * 303.06430 * 23 22 21 47 47 H 1.09003 * 109.51541 * 63.24531 * 23 22 21 48 48 H 1.08999 * 109.40345 * 297.49689 * 24 23 22 49 49 H 1.08995 * 109.49418 * 177.50832 * 24 23 22 50 50 H 1.09002 * 109.47591 * 301.17834 * 26 25 24 51 51 H 1.09001 * 109.48915 * 181.14434 * 26 25 24 52 52 H 1.08997 * 109.51921 * 182.48483 * 27 26 25 53 53 H 1.09006 * 109.57358 * 62.33009 * 27 26 25 54 54 H 1.09003 * 110.36313 * 265.28839 * 28 16 15 55 55 H 1.09001 * 110.36747 * 142.97039 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1664 1.2225 -0.3628 5 6 1.5372 2.3410 0.4663 6 7 0.4139 2.2612 1.1477 7 14 2.3070 4.0088 0.1266 8 1 3.5579 3.8271 -0.6528 9 1 1.3560 4.8440 -0.6501 10 1 2.6194 4.6810 1.4135 11 6 2.1975 -1.2687 -0.0061 12 6 2.4525 -1.7034 -1.4508 13 1 1.5156 -1.7944 -2.0003 14 6 3.4224 -0.7241 -2.1633 15 6 4.0764 -1.6106 -3.2440 16 7 3.9383 -3.0071 -2.8054 17 6 4.3655 -4.0898 -3.4850 18 8 4.1980 -5.1995 -3.0252 19 6 5.0514 -3.9215 -4.8162 20 6 5.4330 -5.2955 -5.3707 21 6 6.1299 -5.1246 -6.7219 22 6 6.5110 -6.4986 -7.2766 23 6 7.5577 -7.1469 -6.3653 24 6 7.9921 -8.4842 -6.9709 25 8 8.5009 -8.2680 -8.2886 26 6 7.5501 -7.7083 -9.1968 27 6 7.0996 -6.3388 -8.6818 28 6 3.2561 -3.0269 -1.4987 29 1 -0.3633 0.0871 1.0240 30 1 -0.3633 0.8433 -0.5874 31 1 -0.3633 -0.9302 -0.4366 32 1 -0.0139 3.0683 1.4738 33 1 3.1499 -1.1409 0.5083 34 1 1.6084 -2.0308 0.5041 35 1 2.8728 0.0987 -2.6202 36 1 4.1721 -0.3489 -1.4667 37 1 3.5672 -1.4694 -4.1973 38 1 5.1310 -1.3542 -3.3455 39 1 4.3766 -3.4231 -5.5122 40 1 5.9509 -3.3193 -4.6880 41 1 6.1080 -5.7935 -4.6746 42 1 4.5338 -5.8981 -5.4989 43 1 5.4554 -4.6264 -7.4183 44 1 7.0291 -4.5222 -6.5934 45 1 5.6250 -7.1319 -7.3224 46 1 8.4227 -6.4894 -6.2790 47 1 7.1270 -7.3151 -5.3782 48 1 7.1349 -9.1559 -7.0179 49 1 8.7692 -8.9295 -6.3497 50 1 6.6871 -8.3698 -9.2729 51 1 8.0087 -7.5944 -10.1790 52 1 6.3417 -5.9297 -9.3498 53 1 7.9545 -5.6636 -8.6439 54 1 3.9863 -3.0569 -0.6900 55 1 2.5830 -3.8820 -1.4351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317838867.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:24 Heat of formation + Delta-G solvation = -103.761515 kcal Electronic energy + Delta-G solvation = -29435.616791 eV Core-core repulsion = 25471.299668 eV Total energy + Delta-G solvation = -3964.317123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13164 -40.36086 -38.98478 -37.09941 -36.75496 -34.03216 -33.50563 -32.12152 -31.95673 -30.35083 -29.09430 -27.90918 -27.03752 -25.15939 -24.45603 -23.74351 -23.12276 -22.00838 -21.04244 -20.93226 -19.98086 -18.74061 -18.05020 -17.35652 -17.11731 -16.95061 -16.84413 -16.43901 -16.17802 -15.70309 -15.52178 -15.22051 -15.11806 -14.96123 -14.60725 -14.54925 -14.43840 -13.96970 -13.70425 -13.62857 -13.35243 -13.18915 -13.00625 -12.79128 -12.77568 -12.66980 -12.62792 -12.44619 -12.30497 -12.20445 -12.13498 -11.93629 -11.84060 -11.69528 -11.60969 -11.56212 -11.36731 -11.16676 -11.14523 -10.87932 -10.58405 -10.39574 -9.63710 -8.71648 -7.76626 -5.24443 1.48986 1.50973 1.60220 1.64000 2.03248 2.55311 2.99123 3.36456 3.42044 3.63598 3.75992 3.78787 3.80059 3.92031 3.98906 4.10324 4.13024 4.17476 4.24207 4.32987 4.36690 4.44350 4.50972 4.52044 4.60689 4.65043 4.68519 4.71962 4.74922 4.79323 4.84916 4.86757 4.87642 4.91624 4.95328 5.01624 5.07171 5.09604 5.13048 5.15760 5.20845 5.27077 5.31456 5.33550 5.43322 5.46087 5.51401 5.53860 5.70447 5.76127 6.28424 6.38426 6.57919 7.15877 7.20707 7.92753 8.38134 9.27584 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.001659 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.636432 B =16874.782385 C =17468.504501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.243 4.243 4 H 0.083 0.917 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.962 3.038 8 H -0.259 1.259 9 H -0.296 1.296 10 H -0.299 1.299 11 C 0.161 3.839 12 C -0.105 4.105 13 H 0.067 0.933 14 C -0.109 4.109 15 C 0.104 3.896 16 N -0.619 5.619 17 C 0.518 3.482 18 O -0.592 6.592 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.105 4.105 22 C -0.090 4.090 23 C -0.151 4.151 24 C 0.056 3.944 25 O -0.407 6.407 26 C 0.053 3.947 27 C -0.147 4.147 28 C 0.115 3.885 29 H 0.001 0.999 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.244 0.756 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.103 0.897 52 H 0.087 0.913 53 H 0.069 0.931 54 H 0.067 0.933 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.974 -16.329 -20.974 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.337 5.337 3 C -0.374 4.374 4 H 0.100 0.900 5 C -0.256 4.256 6 N -0.592 5.592 7 Si 0.792 3.208 8 H -0.183 1.183 9 H -0.224 1.224 10 H -0.227 1.227 11 C 0.034 3.966 12 C -0.127 4.127 13 H 0.085 0.915 14 C -0.147 4.147 15 C -0.018 4.018 16 N -0.352 5.352 17 C 0.309 3.691 18 O -0.473 6.473 19 C -0.167 4.167 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.189 4.189 24 C -0.021 4.021 25 O -0.327 6.327 26 C -0.023 4.023 27 C -0.184 4.184 28 C -0.009 4.009 29 H 0.020 0.980 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.121 0.879 52 H 0.105 0.895 53 H 0.088 0.912 54 H 0.085 0.915 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.020 -16.889 -20.771 30.220 hybrid contribution -0.576 1.167 0.679 1.468 sum 13.444 -15.722 -20.091 28.837 Atomic orbital electron populations 1.20505 0.83211 0.95686 0.97415 1.44090 1.01810 1.01705 1.86101 1.19621 0.98366 0.86027 1.33350 0.89983 1.25792 0.98816 1.01847 0.99098 1.70257 1.21402 1.27167 1.40409 0.85259 0.78207 0.80483 0.76886 1.18270 1.22370 1.22710 1.20748 0.95790 0.86916 0.93140 1.22833 0.97626 0.93207 0.99038 0.91491 1.22482 0.97940 0.97244 0.97022 1.22231 1.02035 0.79029 0.98458 1.48745 1.57993 1.07388 1.21119 1.21185 0.78082 0.82405 0.87455 1.90666 1.59236 1.26030 1.71414 1.21716 1.02207 1.00804 0.91972 1.21323 1.00415 0.95070 0.96951 1.21568 1.00756 0.96488 0.95384 1.21203 0.97770 0.97147 0.94749 1.22273 0.99441 0.97530 0.99632 1.22677 0.99667 0.96289 0.83422 1.87896 1.39768 1.83464 1.21528 1.22747 0.92722 0.93657 0.93189 1.22219 1.01714 0.97931 0.96574 1.22137 0.95412 0.97908 0.85412 0.98044 0.96631 0.95489 0.94662 0.93321 0.93786 0.90708 0.91364 0.89762 0.89267 0.87007 0.86929 0.92424 0.92838 0.90520 0.91030 0.91370 0.91363 0.90781 0.92939 0.88406 0.92827 0.87910 0.89472 0.91242 0.91497 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 8.98 127.77 1.15 9.72 16 2 N -0.61 -29.04 2.87 -726.92 -2.09 -31.12 16 3 C -0.24 -12.41 8.98 84.03 0.75 -11.66 16 4 H 0.08 3.93 6.67 -2.91 -0.02 3.91 16 5 C -0.06 -3.33 5.09 84.86 0.43 -2.89 16 6 N -0.94 -55.31 10.73 21.65 0.23 -55.08 16 7 Si 0.96 43.51 29.57 68.60 2.03 45.54 16 8 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 9 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 11 C 0.16 6.05 5.18 86.38 0.45 6.50 16 12 C -0.11 -3.26 3.29 -9.40 -0.03 -3.29 16 13 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -3.04 5.12 31.78 0.16 -2.87 16 15 C 0.10 2.15 6.49 86.73 0.56 2.71 16 16 N -0.62 -15.61 3.33 -811.79 -2.70 -18.31 16 17 C 0.52 13.25 7.85 87.66 0.69 13.94 16 18 O -0.59 -20.08 16.24 -3.04 -0.05 -20.13 16 19 C -0.13 -2.01 4.89 29.85 0.15 -1.87 16 20 C -0.10 -1.59 4.26 30.59 0.13 -1.46 16 21 C -0.10 -1.15 4.69 30.59 0.14 -1.00 16 22 C -0.09 -1.06 2.27 -10.67 -0.02 -1.08 16 23 C -0.15 -2.00 5.10 30.69 0.16 -1.84 16 24 C 0.06 0.77 6.84 72.02 0.49 1.26 16 25 O -0.41 -6.82 10.77 -148.98 -1.60 -8.43 16 26 C 0.05 0.62 6.84 72.01 0.49 1.11 16 27 C -0.15 -1.48 5.42 30.68 0.17 -1.31 16 28 C 0.11 3.26 6.38 86.85 0.55 3.82 16 29 H 0.00 0.07 7.36 -2.39 -0.02 0.05 16 30 H 0.01 0.79 7.32 -2.39 -0.02 0.78 16 31 H 0.03 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 34 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.02 7.39 -2.38 -0.02 2.00 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.08 6.61 -2.39 -0.02 1.07 16 42 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.04 6.74 -2.39 -0.02 1.03 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 54 H 0.07 1.89 8.04 -2.39 -0.02 1.87 16 55 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 Total: -1.00 -67.85 421.46 3.06 -64.79 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.82 Total: 12.97 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.42 Total: 9.78 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.56 Total: -104.51 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.65 Total: -28.56 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.85 3.06 -64.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317838867.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.975 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds