Wall clock time and date at job start Tue Mar 31 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00073 * 2 1 4 4 C 1.52998 * 109.47111 * 150.00084 * 3 2 1 5 5 C 1.52997 * 109.47252 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47046 * 299.99911 * 5 4 3 7 7 C 1.50701 * 109.47413 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00143 * 274.69693 * 7 6 5 9 9 N 1.34785 * 119.99679 * 94.68917 * 7 6 5 10 10 C 1.46917 * 120.63089 * 354.61920 * 9 7 6 11 11 C 1.53200 * 108.77188 * 233.58165 * 10 9 7 12 12 C 1.53034 * 109.31324 * 305.36541 * 11 10 9 13 13 C 1.53039 * 109.53950 * 61.36145 * 12 11 10 14 14 H 1.09005 * 109.51619 * 58.60715 * 13 12 11 15 15 C 1.53003 * 109.49875 * 178.68246 * 13 12 11 16 16 C 1.53006 * 109.47237 * 294.84222 * 15 13 12 17 17 N 1.46495 * 109.47122 * 179.97438 * 16 15 13 18 18 C 1.36939 * 119.99863 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99800 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99945 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99723 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47293 * 60.00814 * 22 20 18 24 24 H 1.48505 * 109.47030 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47636 * 300.00189 * 22 20 18 26 26 C 1.46926 * 120.62652 * 174.58828 * 9 7 6 27 27 C 1.53000 * 109.47390 * 59.99924 * 6 5 4 28 28 C 1.52998 * 109.47029 * 269.99899 * 3 2 1 29 29 H 1.09005 * 109.47004 * 300.00160 * 1 2 3 30 30 H 1.08999 * 109.46816 * 59.99967 * 1 2 3 31 31 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47386 * 30.00221 * 3 2 1 33 33 H 1.08999 * 109.47530 * 59.99637 * 4 3 2 34 34 H 1.09003 * 109.47230 * 299.99950 * 4 3 2 35 35 H 1.09000 * 109.47231 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47504 * 59.99745 * 5 4 3 37 37 H 1.09003 * 109.47287 * 299.99641 * 6 5 4 38 38 H 1.09005 * 109.59236 * 353.36479 * 10 9 7 39 39 H 1.08998 * 109.59248 * 113.79951 * 10 9 7 40 40 H 1.08997 * 109.49698 * 65.31938 * 11 10 9 41 41 H 1.09001 * 109.49591 * 185.41307 * 11 10 9 42 42 H 1.09007 * 109.45766 * 301.34373 * 12 11 10 43 43 H 1.09006 * 109.46071 * 181.38990 * 12 11 10 44 44 H 1.08999 * 109.47131 * 174.84463 * 15 13 12 45 45 H 1.09002 * 109.46988 * 54.83856 * 15 13 12 46 46 H 1.08998 * 109.47079 * 300.00180 * 16 15 13 47 47 H 1.08999 * 109.46864 * 60.00077 * 16 15 13 48 48 H 0.96998 * 119.99965 * 0.02562 * 17 16 15 49 49 H 0.97003 * 120.00005 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.59109 * 6.63173 * 26 9 7 51 51 H 1.08995 * 109.58849 * 246.20447 * 26 9 7 52 52 H 1.09003 * 109.47137 * 59.99625 * 27 6 5 53 53 H 1.08993 * 109.47673 * 179.97438 * 27 6 5 54 54 H 1.09005 * 109.47300 * 300.00375 * 28 3 2 55 55 H 1.09000 * 109.47197 * 60.00051 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 0.7212 5 6 3.9815 2.6608 0.7207 6 6 4.1891 3.1260 -0.7220 7 6 4.8018 4.5029 -0.7226 8 8 4.0920 5.4825 -0.6372 9 7 6.1387 4.6455 -0.8180 10 6 7.0198 3.4699 -0.8036 11 6 8.0777 3.6600 0.2881 12 6 8.8046 4.9877 0.0627 13 6 7.8033 6.1415 0.1541 14 1 7.3226 6.1298 1.1324 15 6 8.5365 7.4705 -0.0387 16 6 9.5084 7.6899 1.1224 17 7 10.2109 8.9621 0.9375 18 6 11.1368 9.3733 1.8588 19 1 11.3494 8.7595 2.7216 20 6 11.8027 10.5785 1.6832 21 7 11.5439 11.3263 0.6315 22 14 13.0662 11.1390 2.9397 23 1 14.1575 10.1356 3.0259 24 1 13.6295 12.4490 2.5248 25 1 12.4160 11.2786 4.2674 26 6 6.7424 5.9795 -0.9390 27 6 2.8404 3.1683 -1.4433 28 6 2.2177 1.7713 -1.4425 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.3450 1.9994 0.5139 33 1 4.0242 0.5693 0.2075 34 1 3.2111 0.9313 1.7489 35 1 4.9422 2.6308 1.2349 36 1 3.3165 3.3551 1.2342 37 1 4.8542 2.4318 -1.2356 38 1 6.4330 2.5759 -0.5920 39 1 7.5088 3.3678 -1.7723 40 1 7.5944 3.6711 1.2650 41 1 8.7952 2.8406 0.2460 42 1 9.2669 4.9855 -0.9245 43 1 9.5747 5.1139 0.8238 44 1 7.8122 8.2845 -0.0650 45 1 9.0909 7.4468 -0.9769 46 1 8.9541 7.7136 2.0607 47 1 10.2328 6.8759 1.1487 48 1 10.0196 9.5136 0.1627 49 1 12.0090 12.1687 0.5090 50 1 5.9726 6.7415 -0.8168 51 1 7.2087 6.0820 -1.9188 52 1 2.1753 3.8625 -0.9297 53 1 2.9882 3.5002 -2.4709 54 1 2.8829 1.0773 -1.9564 55 1 1.2569 1.8014 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318828906.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:46 Heat of formation + Delta-G solvation = -121.821140 kcal Electronic energy + Delta-G solvation = -30092.357984 eV Core-core repulsion = 26127.257738 eV Total energy + Delta-G solvation = -3965.100247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68047 -39.97997 -38.91622 -37.10527 -36.93900 -35.00839 -33.18152 -32.50221 -31.86057 -31.32528 -29.09851 -27.49009 -26.48324 -25.88567 -24.07127 -23.69504 -23.36450 -22.70169 -21.33185 -20.92803 -19.72727 -19.12670 -18.23792 -17.61656 -17.15521 -16.77740 -16.46963 -16.20346 -16.03353 -15.95748 -15.63762 -15.32951 -15.12637 -14.90523 -14.85995 -14.69506 -14.25877 -14.16137 -14.06850 -13.92147 -13.33605 -13.31540 -13.04880 -12.98412 -12.96884 -12.85067 -12.48071 -12.41987 -12.31683 -12.16713 -12.08775 -11.96519 -11.92681 -11.80258 -11.67768 -11.61495 -11.46152 -11.30290 -11.25436 -10.91064 -10.62663 -10.39584 -9.62565 -9.01370 -7.96465 -5.26103 1.46077 1.49878 1.56075 1.57109 1.97195 2.55346 2.78924 3.36694 3.45067 3.63985 3.68058 3.70265 3.80808 3.89076 4.03811 4.07277 4.13707 4.16282 4.23108 4.28687 4.35832 4.39410 4.40833 4.49286 4.52477 4.54928 4.56998 4.59250 4.65432 4.71433 4.75806 4.78287 4.84274 4.86503 4.88567 4.90724 4.98523 5.01690 5.06366 5.13958 5.16839 5.17366 5.23793 5.29667 5.33226 5.37214 5.44356 5.46664 5.52082 5.55451 6.25675 6.28886 6.42951 7.15621 7.31338 8.07811 8.31077 9.26986 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.001755 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.631006 B =15952.158410 C =16123.732328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.083 3.917 4 C -0.106 4.106 5 C -0.100 4.100 6 C -0.100 4.100 7 C 0.513 3.487 8 O -0.590 6.590 9 N -0.608 5.608 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.082 4.082 14 H 0.060 0.940 15 C -0.108 4.108 16 C 0.155 3.845 17 N -0.749 5.749 18 C -0.251 4.251 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.279 1.279 26 C 0.119 3.881 27 C -0.097 4.097 28 C -0.130 4.130 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.009 0.991 47 H 0.030 0.970 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.056 0.944 53 H 0.066 0.934 54 H 0.081 0.919 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 -29.335 -4.894 35.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.026 3.974 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.121 4.121 7 C 0.303 3.697 8 O -0.470 6.470 9 N -0.340 5.340 10 C -0.022 4.022 11 C -0.166 4.166 12 C -0.155 4.155 13 C -0.102 4.102 14 H 0.079 0.921 15 C -0.146 4.146 16 C 0.028 3.972 17 N -0.392 5.392 18 C -0.383 4.383 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.805 3.195 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.004 4.004 27 C -0.135 4.135 28 C -0.168 4.168 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.027 0.973 47 H 0.048 0.952 48 H 0.204 0.796 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.075 0.925 53 H 0.085 0.915 54 H 0.100 0.900 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.671 -29.027 -4.698 35.378 hybrid contribution 0.376 1.697 0.342 1.772 sum -19.295 -27.330 -4.357 33.737 Atomic orbital electron populations 1.22939 0.80096 1.03656 1.00499 1.87866 1.20861 1.28310 1.95196 1.22248 0.95361 0.84089 0.95730 1.21509 0.95077 0.96300 1.01477 1.21408 1.02203 0.96562 0.93654 1.21454 0.98529 0.92538 0.99586 1.21293 0.81724 0.92169 0.74548 1.90674 1.61804 1.42753 1.51769 1.48285 1.05870 1.08091 1.71753 1.22133 0.92199 0.87414 1.00438 1.21910 0.98197 0.97707 0.98817 1.21639 0.97326 0.93790 1.02725 1.21281 0.95717 0.94605 0.98608 0.92136 1.21562 0.97578 0.96954 0.98511 1.20815 0.93039 0.87380 0.95921 1.42623 1.47175 1.21768 1.27616 1.19633 1.13774 1.02408 1.02463 0.90676 1.25628 1.03079 0.97820 1.00346 1.69822 1.46987 1.14318 1.30926 0.85163 0.78926 0.77029 0.78346 1.20068 1.21979 1.20476 1.21522 0.95417 0.84663 0.98812 1.21291 0.94667 0.97190 1.00376 1.21939 1.01814 0.95847 0.97165 0.93649 0.93506 0.88519 0.92456 0.89579 0.90513 0.89640 0.92592 0.86074 0.86934 0.89579 0.91908 0.88061 0.91087 0.91940 0.93131 0.91548 0.97262 0.95206 0.79573 0.93949 0.91579 0.90403 0.92530 0.91514 0.90041 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -5.79 10.35 -148.98 -1.54 -7.33 16 3 C 0.08 1.04 2.61 30.59 0.08 1.12 16 4 C -0.11 -1.12 5.57 30.59 0.17 -0.95 16 5 C -0.10 -1.26 5.10 30.59 0.16 -1.11 16 6 C -0.10 -1.41 1.72 -11.54 -0.02 -1.43 16 7 C 0.51 11.54 6.69 87.66 0.59 12.12 16 8 O -0.59 -19.01 15.68 -3.02 -0.05 -19.05 16 9 N -0.61 -12.06 2.97 -818.91 -2.43 -14.49 16 10 C 0.10 1.18 6.15 86.37 0.53 1.71 16 11 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 12 C -0.12 -2.40 4.95 30.62 0.15 -2.25 16 13 C -0.08 -2.11 2.34 -10.72 -0.03 -2.13 16 14 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 15 C -0.11 -3.54 4.80 30.60 0.15 -3.40 16 16 C 0.15 6.37 6.02 86.38 0.52 6.89 16 17 N -0.75 -39.76 5.60 -343.45 -1.92 -41.68 16 18 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 22 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C 0.12 2.90 5.73 86.36 0.49 3.39 16 27 C -0.10 -1.46 4.86 30.58 0.15 -1.31 16 28 C -0.13 -1.51 5.53 30.58 0.17 -1.34 16 29 H 0.04 0.39 8.09 -2.38 -0.02 0.37 16 30 H 0.05 0.39 7.87 -2.39 -0.02 0.37 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.76 7.79 -2.38 -0.02 0.74 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.92 8.02 -2.39 -0.02 0.90 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.12 1.05 6.19 -2.39 -0.01 1.04 16 38 H 0.11 0.75 5.43 -2.38 -0.01 0.73 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 43 H 0.06 1.46 6.51 -2.38 -0.02 1.44 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.03 1.19 6.54 -2.39 -0.02 1.17 16 48 H 0.37 20.97 7.67 -92.71 -0.71 20.26 16 49 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.07 1.97 7.00 -2.39 -0.02 1.95 16 51 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.06 1.08 7.85 -2.39 -0.02 1.07 16 53 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 55 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 Total: -1.00 -74.40 418.09 2.33 -72.07 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.14 Total: 28.53 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.83 Total: -6.48 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.08 Total: -116.59 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.59 Total: -26.38 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.40 2.33 -72.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318828906.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.751 kcal (2) G-P(sol) polarization free energy of solvation -74.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds