Wall clock time and date at job start Tue Mar 31 2020 22:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99726 * 2 1 4 4 H 1.08993 * 109.47398 * 352.05432 * 3 2 1 5 5 C 1.50698 * 109.47011 * 112.05492 * 3 2 1 6 6 O 1.21286 * 120.00415 * 4.99357 * 5 3 2 7 7 N 1.34777 * 119.99962 * 185.00164 * 5 3 2 8 8 C 1.46931 * 120.63260 * 359.97438 * 7 5 3 9 9 C 1.53191 * 108.77401 * 126.36926 * 8 7 5 10 10 C 1.53043 * 109.31061 * 54.63947 * 9 8 7 11 11 C 1.53031 * 109.53713 * 298.62930 * 10 9 8 12 12 H 1.08995 * 109.50070 * 301.41519 * 11 10 9 13 13 C 1.53004 * 109.49607 * 181.31875 * 11 10 9 14 14 C 1.52994 * 109.47185 * 65.00059 * 13 11 10 15 15 N 1.46504 * 109.47475 * 179.97438 * 14 13 11 16 16 C 1.36929 * 120.00143 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00317 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00128 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00565 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99735 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47700 * 89.99800 * 20 18 16 22 22 H 1.48504 * 109.47363 * 209.99832 * 20 18 16 23 23 H 1.48505 * 109.47085 * 329.99655 * 20 18 16 24 24 C 1.46924 * 120.63056 * 179.71676 * 7 5 3 25 25 C 1.53004 * 109.47133 * 232.04936 * 3 2 1 26 26 C 1.53878 * 110.03017 * 62.35723 * 25 3 2 27 27 C 1.54270 * 106.63751 * 240.69323 * 26 25 3 28 28 C 1.54957 * 104.15978 * 336.44396 * 27 26 25 29 29 C 1.54264 * 110.03366 * 305.18897 * 25 3 2 30 30 H 1.09001 * 109.47126 * 54.01271 * 1 2 3 31 31 H 1.09001 * 109.46863 * 174.01565 * 1 2 3 32 32 H 1.09007 * 109.46829 * 294.01571 * 1 2 3 33 33 H 1.08996 * 109.58618 * 246.16310 * 8 7 5 34 34 H 1.08999 * 109.58173 * 6.44252 * 8 7 5 35 35 H 1.09002 * 109.49103 * 174.58893 * 9 8 7 36 36 H 1.08994 * 109.50069 * 294.64972 * 9 8 7 37 37 H 1.08998 * 109.46097 * 58.65481 * 10 9 8 38 38 H 1.09006 * 109.45412 * 178.60801 * 10 9 8 39 39 H 1.09000 * 109.46938 * 185.00517 * 13 11 10 40 40 H 1.08998 * 109.47164 * 304.99995 * 13 11 10 41 41 H 1.09000 * 109.47557 * 300.00079 * 14 13 11 42 42 H 1.09007 * 109.47094 * 60.00154 * 14 13 11 43 43 H 0.97000 * 119.99666 * 0.02562 * 15 14 13 44 44 H 0.96994 * 120.00079 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.59070 * 353.41502 * 24 7 5 46 46 H 1.09004 * 109.58960 * 113.84483 * 24 7 5 47 47 H 1.08998 * 110.05777 * 183.77033 * 25 3 2 48 48 H 1.09004 * 110.02839 * 359.97438 * 26 25 3 49 49 H 1.08991 * 110.03387 * 121.38064 * 26 25 3 50 50 H 1.08999 * 110.48583 * 95.09518 * 27 26 25 51 51 H 1.09001 * 110.48089 * 217.73750 * 27 26 25 52 52 H 1.09001 * 110.72283 * 279.57316 * 28 27 26 53 53 H 1.09005 * 110.92644 * 156.30272 * 28 27 26 54 54 H 1.08997 * 110.48687 * 261.57120 * 29 25 3 55 55 H 1.09004 * 110.48662 * 24.08740 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2282 2.0513 -0.1420 5 6 2.7019 1.5474 1.3168 6 8 2.7761 0.6558 2.1357 7 7 3.2379 2.7546 1.5847 8 6 3.1564 3.8445 0.6027 9 6 2.5422 5.0736 1.2801 10 6 3.3495 5.4167 2.5342 11 6 3.2918 4.2446 3.5164 12 1 2.2534 4.0368 3.7743 13 6 4.0718 4.6014 4.7835 14 6 3.3790 5.7629 5.4987 15 7 4.1254 6.1042 6.7123 16 6 3.6914 7.1212 7.5198 17 1 2.7985 7.6717 7.2624 18 6 4.3989 7.4449 8.6694 19 7 3.9815 8.4222 9.4459 20 14 5.9436 6.4934 9.1143 21 1 7.1248 7.1520 8.5007 22 1 6.1020 6.4689 10.5906 23 1 5.8323 5.1028 8.6052 24 6 3.9099 3.0076 2.8665 25 6 3.0281 1.4106 -1.1375 26 6 2.3245 1.2239 -2.4932 27 6 2.9623 -0.0152 -3.1549 28 6 4.3573 -0.1246 -2.4891 29 6 4.0691 0.2781 -1.0215 30 1 -0.3633 0.6039 -0.8315 31 1 -0.3633 -1.0221 -0.1071 32 1 -0.3633 0.4183 0.9388 33 1 4.1560 4.0871 0.2423 34 1 2.5310 3.5356 -0.2349 35 1 2.5643 5.9178 0.5909 36 1 1.5106 4.8582 1.5584 37 1 4.3863 5.6081 2.2576 38 1 2.9293 6.3057 3.0045 39 1 4.1059 3.7357 5.4449 40 1 5.0870 4.8936 4.5150 41 1 3.3449 6.6286 4.8372 42 1 2.3637 5.4706 5.7672 43 1 4.9276 5.6101 6.9433 44 1 4.4762 8.6486 10.2489 45 1 3.7796 2.1476 3.5234 46 1 4.9722 3.1808 2.6943 47 1 3.5257 2.3799 -1.1055 48 1 1.2581 1.0580 -2.3407 49 1 2.4800 2.1028 -3.1187 50 1 2.3696 -0.9061 -2.9472 51 1 3.0625 0.1355 -4.2298 52 1 5.0599 0.5700 -2.9494 53 1 4.7351 -1.1457 -2.5424 54 1 4.9768 0.6422 -0.5404 55 1 3.6560 -0.5644 -0.4668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318852942.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:09 Heat of formation + Delta-G solvation = -106.927976 kcal Electronic energy + Delta-G solvation = -30878.316393 eV Core-core repulsion = 26913.861963 eV Total energy + Delta-G solvation = -3964.454431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.79856 -39.82220 -38.65095 -37.64923 -37.05095 -35.11462 -33.44800 -32.69743 -31.80407 -29.59976 -29.40245 -27.74436 -27.04756 -26.02270 -25.08702 -23.39268 -22.93158 -21.65836 -21.33688 -20.72777 -20.23811 -19.61319 -18.27823 -17.81825 -17.07989 -16.79433 -16.59036 -16.44244 -16.05746 -15.94934 -15.68239 -15.38726 -15.28532 -14.98989 -14.85672 -14.53211 -14.40145 -14.13701 -14.09615 -13.94940 -13.68261 -13.51867 -13.12002 -12.98027 -12.60653 -12.44997 -12.34145 -12.30589 -12.13937 -12.00497 -11.97023 -11.88963 -11.85512 -11.80572 -11.68335 -11.64337 -11.44351 -11.37025 -11.29332 -11.10358 -10.95585 -10.26009 -9.66465 -9.31364 -8.05299 -5.39144 1.36469 1.39973 1.47464 1.52025 1.81149 2.46449 2.80950 3.25727 3.35546 3.52418 3.60622 3.65975 3.76789 3.84586 3.87863 3.91759 4.02177 4.06600 4.30977 4.31992 4.37750 4.42702 4.44515 4.50644 4.53204 4.58928 4.62098 4.66093 4.71476 4.74118 4.79190 4.81858 4.83825 4.85926 4.88507 4.90696 4.98792 5.01749 5.11310 5.13440 5.21408 5.28314 5.29659 5.34327 5.42203 5.45659 5.48165 5.52034 5.55259 5.72818 6.04009 6.18923 6.39282 7.05313 7.12832 7.81820 8.01108 9.16118 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.002100 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.839513 B =13327.770638 C =13349.533362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.376 6.376 3 C 0.083 3.917 4 H 0.113 0.887 5 C 0.493 3.507 6 O -0.579 6.579 7 N -0.604 5.604 8 C 0.096 3.904 9 C -0.130 4.130 10 C -0.118 4.118 11 C -0.085 4.085 12 H 0.059 0.941 13 C -0.112 4.112 14 C 0.156 3.844 15 N -0.762 5.762 16 C -0.238 4.238 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.983 5.983 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.254 1.254 24 C 0.120 3.880 25 C -0.096 4.096 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.077 0.923 53 H 0.060 0.940 54 H 0.052 0.948 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 -15.604 -34.263 37.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.293 6.293 3 C 0.022 3.978 4 H 0.130 0.870 5 C 0.282 3.718 6 O -0.458 6.458 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.168 4.168 10 C -0.156 4.156 11 C -0.104 4.104 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.030 3.970 15 N -0.408 5.408 16 C -0.369 4.369 17 H 0.073 0.927 18 C -0.258 4.258 19 N -0.634 5.634 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.179 1.179 24 C -0.003 4.003 25 C -0.115 4.115 26 C -0.148 4.148 27 C -0.158 4.158 28 C -0.158 4.158 29 C -0.158 4.158 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.199 0.801 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.086 0.914 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.096 0.904 52 H 0.096 0.904 53 H 0.078 0.922 54 H 0.071 0.929 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.150 -16.097 -33.805 37.575 hybrid contribution 0.467 -0.133 1.612 1.683 sum -2.683 -16.231 -32.193 36.153 Atomic orbital electron populations 1.23104 0.79543 1.04223 1.00547 1.87995 1.21098 1.25832 1.94373 1.22168 0.97218 0.87373 0.91080 0.86997 1.21743 0.78617 0.81719 0.89711 1.90683 1.60016 1.44661 1.50485 1.48221 1.56127 1.11614 1.17860 1.22282 1.03429 0.85937 0.90901 1.21932 0.99249 0.98320 0.97320 1.21651 1.01653 0.96899 0.95381 1.21222 0.99256 0.95485 0.94480 0.92217 1.21625 0.99941 0.97422 0.96081 1.20810 0.93778 0.95910 0.86457 1.42781 1.31133 1.40158 1.26688 1.19049 1.07604 1.07958 1.02272 0.92664 1.25569 1.02935 0.99824 0.97466 1.69887 1.43018 1.33826 1.16621 0.85359 0.79777 0.79469 0.76877 1.19942 1.22159 1.17900 1.21453 0.96648 0.97372 0.84805 1.22305 0.94797 1.00940 0.93461 1.22146 0.99666 0.99153 0.93862 1.22317 0.95525 0.98038 0.99887 1.22476 0.97822 1.01284 0.94203 1.22295 0.97566 0.98059 0.97831 0.91153 0.88494 0.94933 0.88958 0.87208 0.87869 0.92084 0.90595 0.91910 0.92443 0.90571 0.94713 0.96949 0.80111 0.93263 0.91702 0.90061 0.87143 0.91379 0.89281 0.92573 0.90396 0.90425 0.92158 0.92945 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.64 113.37 1.21 1.50 16 2 O -0.38 -7.57 8.34 -129.99 -1.08 -8.65 16 3 C 0.08 1.33 1.30 29.85 0.04 1.37 16 4 H 0.11 1.18 6.87 -2.39 -0.02 1.16 16 5 C 0.49 11.70 6.60 87.66 0.58 12.28 16 6 O -0.58 -19.96 15.92 15.94 0.25 -19.71 16 7 N -0.60 -11.54 2.98 -819.66 -2.44 -13.98 16 8 C 0.10 1.01 4.93 86.36 0.43 1.43 16 9 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 10 C -0.12 -2.18 4.95 30.62 0.15 -2.03 16 11 C -0.08 -1.97 2.33 -10.85 -0.03 -2.00 16 12 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 13 C -0.11 -3.25 4.80 30.59 0.15 -3.11 16 14 C 0.16 5.99 6.02 86.38 0.52 6.51 16 15 N -0.76 -36.76 5.41 -343.45 -1.86 -38.61 16 16 C -0.24 -13.99 10.47 84.03 0.88 -13.11 16 17 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 20 Si 0.96 46.37 27.74 68.60 1.90 48.27 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.25 -11.22 6.52 99.48 0.65 -10.58 16 24 C 0.12 2.71 5.69 86.23 0.49 3.20 16 25 C -0.10 -1.12 2.33 -10.07 -0.02 -1.14 16 26 C -0.11 -0.87 6.25 31.32 0.20 -0.68 16 27 C -0.12 -1.17 6.84 31.69 0.22 -0.95 16 28 C -0.12 -1.43 6.91 31.91 0.22 -1.21 16 29 C -0.12 -1.97 5.74 31.67 0.18 -1.78 16 30 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.62 4.72 -2.39 -0.01 0.61 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.36 6.51 -2.38 -0.02 1.34 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.03 1.31 6.54 -2.39 -0.02 1.30 16 42 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.37 16.75 5.53 -92.71 -0.51 16.24 16 44 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 45 H 0.06 1.84 7.01 -2.39 -0.02 1.82 16 46 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.11 0.86 5.48 -2.39 -0.01 0.85 16 48 H 0.07 0.52 6.87 -2.38 -0.02 0.50 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 54 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 55 H 0.05 1.15 7.03 -2.39 -0.02 1.13 16 Total: -1.00 -80.00 411.33 3.22 -76.78 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.29 Total: 24.30 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.86 Total: -4.64 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.00 Total: -116.35 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.83 Total: -28.36 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.27 kcal Total: -80.00 3.22 -76.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318852942.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.147 kcal (2) G-P(sol) polarization free energy of solvation -80.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds