Wall clock time and date at job start Tue Mar 31 2020 22:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50690 * 120.00357 * 2 1 4 4 C 1.50700 * 119.99531 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47325 * 5.00182 * 4 2 1 6 6 C 1.53001 * 109.47390 * 244.99922 * 4 2 1 7 7 C 1.50693 * 109.47571 * 175.00137 * 6 4 2 8 8 O 1.21285 * 119.99710 * 359.97438 * 7 6 4 9 9 N 1.34768 * 120.00250 * 180.02562 * 7 6 4 10 10 C 1.46506 * 120.00188 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47036 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47075 * 180.02562 * 11 10 9 13 13 C 1.53040 * 109.45968 * 295.02730 * 12 11 10 14 14 C 1.53197 * 109.31280 * 178.60386 * 13 12 11 15 15 N 1.46918 * 108.76653 * 54.65224 * 14 13 12 16 16 C 1.36940 * 120.63156 * 126.40740 * 15 14 13 17 17 H 1.08002 * 119.99914 * 332.60746 * 16 15 14 18 18 C 1.38806 * 120.00298 * 152.60485 * 16 15 14 19 19 N 1.31624 * 120.00504 * 159.34346 * 18 16 15 20 20 Si 1.86812 * 119.99977 * 339.34924 * 18 16 15 21 21 H 1.48492 * 109.47098 * 92.94065 * 20 18 16 22 22 H 1.48501 * 109.46960 * 212.94526 * 20 18 16 23 23 H 1.48500 * 109.46739 * 332.93814 * 20 18 16 24 24 C 1.46925 * 118.73917 * 306.38310 * 15 14 13 25 25 C 1.53045 * 109.46247 * 174.97213 * 12 11 10 26 26 O 1.42900 * 109.47335 * 124.99523 * 4 2 1 27 27 C 1.42891 * 114.00545 * 270.00179 * 26 4 2 28 28 C 1.53001 * 109.47553 * 179.97438 * 27 26 4 29 29 H 1.08003 * 119.99494 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00299 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47620 * 299.99845 * 3 2 1 33 33 H 1.09005 * 109.47353 * 60.00369 * 3 2 1 34 34 H 1.09002 * 109.46389 * 54.99550 * 6 4 2 35 35 H 1.09001 * 109.46548 * 295.00246 * 6 4 2 36 36 H 0.97004 * 120.00012 * 359.72233 * 9 7 6 37 37 H 1.08994 * 109.47043 * 299.99584 * 10 9 7 38 38 H 1.08994 * 109.46984 * 59.99750 * 10 9 7 39 39 H 1.09005 * 109.47046 * 299.99998 * 11 10 9 40 40 H 1.08994 * 109.47549 * 59.99959 * 11 10 9 41 41 H 1.08997 * 109.46326 * 54.99699 * 12 11 10 42 42 H 1.09006 * 109.49403 * 298.56405 * 13 12 11 43 43 H 1.08991 * 109.49836 * 58.65840 * 13 12 11 44 44 H 1.09001 * 109.59613 * 294.86357 * 14 13 12 45 45 H 1.09005 * 109.69945 * 174.50626 * 14 13 12 46 46 H 0.96993 * 120.00098 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.59020 * 293.82016 * 24 15 14 48 48 H 1.09001 * 109.70248 * 173.46508 * 24 15 14 49 49 H 1.09003 * 109.49528 * 301.33377 * 25 12 11 50 50 H 1.08990 * 109.49558 * 61.39682 * 25 12 11 51 51 H 1.09003 * 109.47215 * 299.99961 * 27 26 4 52 52 H 1.09002 * 109.47195 * 59.99623 * 27 26 4 53 53 H 1.08998 * 109.47343 * 180.02562 * 28 27 26 54 54 H 1.09003 * 109.46961 * 300.00279 * 28 27 26 55 55 H 1.09002 * 109.47045 * 59.99693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3585 -2.1316 -0.0906 6 6 2.8464 -1.4427 1.3067 7 6 3.5007 -2.7991 1.3601 8 8 3.3548 -3.5793 0.4430 9 7 4.2472 -3.1457 2.4273 10 6 4.8829 -4.4646 2.4794 11 6 5.6649 -4.6025 3.7872 12 6 6.3293 -5.9796 3.8414 13 6 5.2509 -7.0641 3.8974 14 6 5.9191 -8.4426 3.9163 15 7 6.8782 -8.4877 5.0283 16 6 6.8189 -9.4890 5.9606 17 1 5.8779 -9.9751 6.1719 18 6 7.9683 -9.8792 6.6340 19 7 7.8742 -10.5202 7.7798 20 14 9.6487 -9.4945 5.9142 21 1 10.1389 -8.2049 6.4633 22 1 10.5997 -10.5779 6.2709 23 1 9.5431 -9.3953 4.4363 24 6 7.9024 -7.4384 5.1208 25 6 7.2120 -6.0712 5.0882 26 8 2.9708 -1.3310 -1.1043 27 6 2.4138 -1.8757 -2.3021 28 6 3.4677 -1.8532 -3.4110 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 3.1353 1.1058 -0.0005 32 1 1.8003 1.8766 -0.8900 33 1 1.8003 1.8766 0.8900 34 1 2.1656 -1.3341 2.1510 35 1 3.6116 -0.6680 1.3550 36 1 4.3667 -2.5205 3.1592 37 1 4.1174 -5.2390 2.4309 38 1 5.5638 -4.5734 1.6353 39 1 6.4304 -3.8280 3.8362 40 1 4.9837 -4.4939 4.6311 41 1 6.9420 -6.1225 2.9513 42 1 4.6535 -6.9368 4.8002 43 1 4.6081 -6.9836 3.0209 44 1 6.4430 -8.6078 2.9749 45 1 5.1630 -9.2155 4.0542 46 1 8.6774 -10.7931 8.2501 47 1 8.5882 -7.5217 4.2777 48 1 8.4556 -7.5461 6.0538 49 1 7.9653 -5.2839 5.0592 50 1 6.5961 -5.9528 5.9795 51 1 2.0979 -2.9032 -2.1214 52 1 1.5536 -1.2794 -2.6067 53 1 3.0427 -2.2683 -4.3248 54 1 3.7832 -0.8256 -3.5915 55 1 4.3281 -2.4492 -3.1066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319020829.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:05 Heat of formation + Delta-G solvation = -86.159172 kcal Electronic energy + Delta-G solvation = -29643.390271 eV Core-core repulsion = 25679.836444 eV Total energy + Delta-G solvation = -3963.553828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.97194 -39.81276 -39.18583 -36.73318 -36.09063 -35.04118 -33.44693 -32.64453 -31.91304 -31.28652 -29.94807 -28.22552 -26.87033 -25.20092 -24.58142 -23.66759 -23.45516 -22.35497 -21.37190 -20.66102 -19.77733 -18.78265 -17.93454 -17.83157 -17.21660 -17.01149 -16.57709 -16.53966 -15.93456 -15.63841 -15.47666 -15.26889 -15.13164 -14.93639 -14.79153 -14.53306 -14.35287 -14.24473 -14.07788 -13.93314 -13.49235 -13.37623 -13.18891 -13.11133 -12.88349 -12.77722 -12.60923 -12.48486 -12.46241 -12.27158 -12.16170 -12.01078 -11.96744 -11.78691 -11.65131 -11.55995 -11.19768 -11.05974 -10.86299 -10.62577 -10.46341 -10.07721 -10.00437 -8.91541 -8.17026 -5.47838 1.19013 1.28225 1.40281 1.49645 1.72397 2.25523 2.40957 2.80178 3.06438 3.36984 3.65140 3.79340 3.90384 3.92789 3.93194 4.04147 4.15054 4.21107 4.27269 4.35188 4.37423 4.41514 4.45986 4.49416 4.57164 4.61489 4.62196 4.69175 4.73125 4.76235 4.82583 4.86303 4.92303 4.93845 5.00536 5.01646 5.02071 5.07568 5.08053 5.18321 5.23755 5.25347 5.28374 5.30604 5.36474 5.52379 5.63646 5.64325 5.81735 5.87495 6.12346 6.33818 6.63037 6.93153 7.34052 7.63743 8.04506 9.03085 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.001796 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.250284 B =15589.475402 C =15902.333899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.155 4.155 3 C -0.111 4.111 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.130 4.130 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.721 5.721 10 C 0.124 3.876 11 C -0.109 4.109 12 C -0.072 4.072 13 C -0.120 4.120 14 C 0.140 3.860 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.049 0.951 18 C -0.038 4.038 19 N -0.958 5.958 20 Si 0.949 3.051 21 H -0.271 1.271 22 H -0.311 1.311 23 H -0.265 1.265 24 C 0.116 3.884 25 C -0.119 4.119 26 O -0.385 6.385 27 C 0.062 3.938 28 C -0.145 4.145 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.416 0.584 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.049 0.951 46 H 0.261 0.739 47 H 0.029 0.971 48 H 0.047 0.953 49 H 0.083 0.917 50 H 0.055 0.945 51 H 0.035 0.965 52 H 0.053 0.947 53 H 0.085 0.915 54 H 0.065 0.935 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 29.011 -17.472 36.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.080 3.920 5 H 0.074 0.926 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.459 6.459 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.146 4.146 12 C -0.091 4.091 13 C -0.159 4.159 14 C 0.015 3.985 15 N -0.346 5.346 16 C -0.377 4.377 17 H 0.067 0.933 18 C -0.232 4.232 19 N -0.604 5.604 20 Si 0.778 3.222 21 H -0.198 1.198 22 H -0.240 1.240 23 H -0.190 1.190 24 C -0.008 4.008 25 C -0.158 4.158 26 O -0.305 6.305 27 C -0.015 4.015 28 C -0.203 4.203 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.074 0.926 51 H 0.053 0.947 52 H 0.072 0.928 53 H 0.104 0.896 54 H 0.084 0.916 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.443 28.435 -18.005 35.882 hybrid contribution 0.670 -0.746 0.442 1.096 sum -11.773 27.688 -17.563 34.838 Atomic orbital electron populations 1.23926 0.94956 1.02895 0.99838 1.22249 0.95690 0.96220 1.01430 1.20731 1.00087 0.93458 1.02489 1.20817 0.90687 0.94158 0.86347 0.92604 1.21843 1.02082 0.94233 0.98781 1.21076 0.78441 0.89600 0.81318 1.90694 1.62568 1.54375 1.38245 1.45952 1.51341 1.17921 1.22116 1.21291 0.96207 0.84398 0.98127 1.21693 0.99745 0.96866 0.96324 1.20917 0.96182 0.94257 0.97775 1.21988 0.97671 0.94726 1.01522 1.21121 0.91623 0.96762 0.89008 1.44506 1.35798 1.26231 1.28091 1.18878 0.93708 1.12116 1.13036 0.93329 1.25919 1.01343 0.98813 0.97150 1.69970 1.29499 1.45606 1.15366 0.85869 0.80591 0.76208 0.79503 1.19802 1.24029 1.18983 1.21418 0.91448 0.89398 0.98548 1.21935 0.99319 0.96223 0.98276 1.87860 1.39319 1.83368 1.19904 1.22453 0.96916 0.96767 0.85314 1.21711 0.98700 1.02745 0.97095 0.86565 0.88452 0.92077 0.91598 0.90196 0.84960 0.86243 0.74726 0.92532 0.92852 0.89499 0.90518 0.91239 0.92838 0.90435 0.95262 0.93259 0.92986 0.95304 0.93505 0.89862 0.92595 0.94659 0.92832 0.89607 0.91585 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 13.95 67.78 0.95 -0.91 16 2 C -0.16 -1.90 5.05 -16.49 -0.08 -1.98 16 3 C -0.11 -1.07 9.69 71.23 0.69 -0.38 16 4 C 0.14 2.28 1.78 29.85 0.05 2.34 16 5 H 0.06 1.08 7.25 -2.39 -0.02 1.07 16 6 C -0.13 -1.69 5.24 29.85 0.16 -1.53 16 7 C 0.51 10.35 7.71 87.66 0.68 11.03 16 8 O -0.58 -17.27 15.42 10.73 0.17 -17.11 16 9 N -0.72 -11.71 5.56 -463.08 -2.57 -14.28 16 10 C 0.12 2.50 5.43 86.38 0.47 2.97 16 11 C -0.11 -2.01 4.80 30.59 0.15 -1.87 16 12 C -0.07 -1.90 2.15 -10.77 -0.02 -1.92 16 13 C -0.12 -3.66 5.14 30.67 0.16 -3.50 16 14 C 0.14 5.50 6.52 86.37 0.56 6.06 16 15 N -0.62 -29.71 2.77 -699.11 -1.94 -31.65 16 16 C -0.25 -14.39 10.03 84.03 0.84 -13.54 16 17 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 18 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 19 N -0.96 -61.16 13.97 21.65 0.30 -60.85 16 20 Si 0.95 47.46 24.35 68.60 1.67 49.13 16 21 H -0.27 -12.67 6.62 99.48 0.66 -12.01 16 22 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.27 -12.82 6.63 99.48 0.66 -12.16 16 24 C 0.12 4.90 4.20 86.36 0.36 5.26 16 25 C -0.12 -3.71 5.36 30.67 0.16 -3.54 16 26 O -0.38 -8.04 9.01 -135.20 -1.22 -9.26 16 27 C 0.06 1.16 6.46 71.98 0.46 1.62 16 28 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 29 H 0.12 0.86 8.05 -2.91 -0.02 0.84 16 30 H 0.10 1.01 7.84 -2.91 -0.02 0.99 16 31 H 0.06 0.67 7.50 -2.38 -0.02 0.65 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.12 1.17 7.66 -2.39 -0.02 1.16 16 36 H 0.42 3.90 8.47 -92.71 -0.79 3.11 16 37 H 0.06 1.33 6.53 -2.39 -0.02 1.31 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.08 2.04 6.50 -2.39 -0.02 2.03 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 46 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.03 1.19 7.07 -2.39 -0.02 1.17 16 48 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16 52 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -76.24 426.36 3.14 -73.10 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.04 Total: 14.22 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.77 Total: -3.29 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.21 Total: -106.79 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.05 Total: -26.37 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.67 Total: 49.13 kcal Total: -76.24 3.14 -73.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319020829.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds