Wall clock time and date at job start Tue Mar 31 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99946 * 2 1 4 4 H 1.08999 * 109.47018 * 330.00460 * 3 2 1 5 5 C 1.53004 * 109.46771 * 90.00247 * 3 2 1 6 6 C 1.53003 * 109.46935 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47274 * 300.00440 * 6 5 3 8 8 C 1.53001 * 109.46929 * 59.99597 * 7 6 5 9 9 H 1.09004 * 109.46932 * 60.00483 * 8 7 6 10 10 C 1.50700 * 109.46654 * 179.97438 * 8 7 6 11 11 O 1.21279 * 119.99673 * 119.99960 * 10 8 7 12 12 N 1.34776 * 120.00228 * 300.00466 * 10 8 7 13 13 C 1.46500 * 119.99748 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46743 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47011 * 180.02562 * 14 13 12 16 16 C 1.53040 * 109.45804 * 295.06597 * 15 14 13 17 17 C 1.53189 * 109.31291 * 178.61208 * 16 15 14 18 18 N 1.46933 * 108.77312 * 54.64129 * 17 16 15 19 19 C 1.36934 * 120.62964 * 126.36694 * 18 17 16 20 20 H 1.07999 * 120.00423 * 331.86049 * 19 18 17 21 21 C 1.38820 * 119.99472 * 151.85845 * 19 18 17 22 22 N 1.31612 * 120.00169 * 343.07286 * 21 19 18 23 23 Si 1.86798 * 119.99530 * 163.07405 * 21 19 18 24 24 H 1.48497 * 109.47493 * 59.99948 * 23 21 19 25 25 H 1.48504 * 109.46710 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46988 * 299.99606 * 23 21 19 27 27 C 1.46921 * 118.73577 * 306.38875 * 18 17 16 28 28 C 1.53039 * 109.45887 * 175.00441 * 15 14 13 29 29 C 1.52998 * 109.46878 * 210.00193 * 3 2 1 30 30 H 1.09000 * 109.47335 * 59.99619 * 1 2 3 31 31 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46665 * 299.99675 * 1 2 3 33 33 H 1.08999 * 109.47175 * 60.00309 * 5 3 2 34 34 H 1.08999 * 109.47201 * 299.99867 * 5 3 2 35 35 H 1.09002 * 109.46738 * 59.99737 * 6 5 3 36 36 H 1.08993 * 109.47398 * 179.97438 * 6 5 3 37 37 H 1.08997 * 109.46719 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.46233 * 299.99965 * 7 6 5 39 39 H 0.97002 * 119.99783 * 359.97438 * 12 10 8 40 40 H 1.08999 * 109.47551 * 299.99690 * 13 12 10 41 41 H 1.09002 * 109.47031 * 60.00470 * 13 12 10 42 42 H 1.09007 * 109.47533 * 299.99821 * 14 13 12 43 43 H 1.08996 * 109.47386 * 60.00591 * 14 13 12 44 44 H 1.08997 * 109.46309 * 55.02757 * 15 14 13 45 45 H 1.09004 * 109.50278 * 298.56997 * 16 15 14 46 46 H 1.09008 * 109.49840 * 58.66361 * 16 15 14 47 47 H 1.09002 * 109.58952 * 294.85156 * 17 16 15 48 48 H 1.08997 * 109.70405 * 174.49103 * 17 16 15 49 49 H 0.96994 * 120.00070 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.58702 * 293.82522 * 27 18 17 51 51 H 1.08999 * 109.70333 * 173.46555 * 27 18 17 52 52 H 1.09005 * 109.49625 * 301.33086 * 28 15 14 53 53 H 1.08999 * 109.50449 * 61.40005 * 28 15 14 54 54 H 1.09002 * 109.47103 * 60.00764 * 29 3 2 55 55 H 1.08999 * 109.47514 * 299.99964 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 2.8406 3.1688 1.4426 7 6 4.1893 3.1261 0.7214 8 6 3.9817 2.6602 -0.7211 9 1 3.3168 3.3545 -1.2350 10 6 5.3101 2.6188 -1.4316 11 8 5.7189 1.5741 -1.8925 12 7 6.0439 3.7426 -1.5547 13 6 7.3355 3.7021 -2.2449 14 6 7.9574 5.1000 -2.2454 15 6 9.3061 5.0578 -2.9668 16 6 10.2796 4.1802 -2.1768 17 6 11.6176 4.1122 -2.9197 18 7 12.0962 5.4808 -3.1579 19 6 13.3505 5.8603 -2.7606 20 1 13.8187 5.3772 -1.9158 21 6 14.0203 6.8661 -3.4439 22 7 13.6211 7.2237 -4.6459 23 14 15.4882 7.7120 -2.6571 24 1 16.5441 6.7076 -2.3718 25 1 16.0224 8.7411 -3.5850 26 1 15.0654 8.3596 -1.3894 27 6 11.2033 6.4345 -3.8300 28 6 9.8698 6.4763 -3.0770 29 6 3.3589 1.2633 -0.7213 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.8830 1.0774 1.9563 34 1 1.2569 1.8014 1.9564 35 1 2.1756 3.8630 0.9286 36 1 2.9880 3.5009 2.4702 37 1 4.6328 4.1218 0.7211 38 1 4.8542 2.4319 1.2353 39 1 5.7168 4.5782 -1.1862 40 1 8.0007 3.0083 -1.7307 41 1 7.1880 3.3700 -3.2725 42 1 7.2921 5.7935 -2.7599 43 1 8.1049 5.4325 -1.2180 44 1 9.1710 4.6422 -3.9653 45 1 10.4345 4.6088 -1.1866 46 1 9.8667 3.1761 -2.0786 47 1 11.4808 3.6018 -3.8731 48 1 12.3458 3.5704 -2.3163 49 1 14.0893 7.9262 -5.1235 50 1 11.0326 6.1134 -4.8576 51 1 11.6557 7.4261 -3.8274 52 1 9.1653 7.1067 -3.6195 53 1 10.0281 6.8836 -2.0784 54 1 3.2110 0.9315 -1.7490 55 1 4.0242 0.5694 -0.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319032325.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:20 Heat of formation + Delta-G solvation = -119.869942 kcal Electronic energy + Delta-G solvation = -29657.571160 eV Core-core repulsion = 25692.555523 eV Total energy + Delta-G solvation = -3965.015636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32604 -39.79776 -39.37920 -37.22025 -36.67606 -35.07073 -33.10489 -32.10430 -31.57223 -31.07961 -29.79869 -27.32098 -26.95771 -25.09530 -24.12787 -23.43736 -23.28924 -22.14852 -21.49084 -20.78897 -20.52275 -18.69506 -18.37706 -17.31979 -16.88154 -16.79582 -16.62275 -16.32110 -16.02055 -15.73565 -15.60296 -15.29217 -15.28063 -14.93143 -14.73265 -14.61039 -14.30001 -14.20232 -13.90583 -13.79892 -13.45363 -13.21448 -13.01937 -12.91477 -12.79893 -12.62891 -12.52667 -12.38750 -12.28394 -12.12468 -12.03522 -11.93116 -11.80587 -11.66088 -11.51987 -11.48127 -11.46803 -11.10164 -10.98066 -10.77242 -10.51935 -10.36812 -10.04646 -8.65997 -7.86555 -5.32257 1.46659 1.48598 1.55861 1.63831 2.15422 2.51757 2.84435 3.27315 3.56229 3.70573 3.73154 3.85678 3.89505 3.94123 4.07814 4.13312 4.15795 4.23370 4.30860 4.35611 4.42778 4.44518 4.46708 4.53783 4.56359 4.59782 4.65023 4.67784 4.75945 4.79509 4.86754 4.90758 4.99501 5.04000 5.05347 5.07863 5.10937 5.12785 5.17627 5.22949 5.27919 5.30077 5.36886 5.41327 5.44128 5.47829 5.49472 5.57023 5.67760 5.81913 6.31599 6.40117 6.59052 7.16258 7.28600 7.88262 8.40037 9.19299 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033820 B = 0.001647 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.723178 B =16998.668040 C =17186.568761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.091 3.909 4 H 0.080 0.920 5 C -0.141 4.141 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.092 4.092 9 H 0.127 0.873 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.714 5.714 13 C 0.122 3.878 14 C -0.106 4.106 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.611 5.611 19 C -0.266 4.266 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.174 3.826 28 C -0.120 4.120 29 C -0.095 4.095 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.417 0.583 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.047 0.953 49 H 0.250 0.750 50 H -0.009 1.009 51 H 0.051 0.949 52 H 0.071 0.929 53 H 0.053 0.947 54 H 0.056 0.944 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.454 -5.392 12.882 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.034 3.966 4 H 0.098 0.902 5 C -0.179 4.179 6 C -0.146 4.146 7 C -0.149 4.149 8 C -0.113 4.113 9 H 0.145 0.855 10 C 0.298 3.702 11 O -0.470 6.470 12 N -0.366 5.366 13 C -0.002 4.002 14 C -0.144 4.144 15 C -0.090 4.090 16 C -0.156 4.156 17 C 0.012 3.988 18 N -0.335 5.335 19 C -0.396 4.396 20 H 0.081 0.919 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.202 1.202 27 C 0.048 3.952 28 C -0.159 4.159 29 C -0.133 4.133 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.089 0.911 53 H 0.072 0.928 54 H 0.075 0.925 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.962 -6.182 12.451 33.030 hybrid contribution 1.136 0.620 -0.176 1.306 sum -28.826 -5.562 12.275 31.821 Atomic orbital electron populations 1.22957 0.79617 1.03594 1.00933 1.87899 1.21386 1.28948 1.95252 1.22189 0.93890 0.84363 0.96182 0.90228 1.22058 1.01870 0.97845 0.96136 1.21471 0.95432 0.95911 1.01783 1.21608 0.98952 1.02451 0.91886 1.21258 0.92917 0.98998 0.98166 0.85490 1.21173 0.87079 0.83006 0.78944 1.90710 1.73240 1.32362 1.50694 1.45930 1.20574 1.11908 1.58193 1.21324 0.83983 0.98252 0.96666 1.21690 0.95392 0.95279 1.02058 1.20891 0.93992 0.95450 0.98702 1.21965 0.95219 0.99548 0.98828 1.21074 0.95204 0.86112 0.96427 1.44324 1.12714 1.07038 1.69384 1.19495 0.93477 1.18213 1.08420 0.91869 1.25810 1.00873 1.02507 0.95443 1.70184 1.43745 1.32430 1.11808 0.85335 0.79378 0.78092 0.77604 1.20281 1.21917 1.20242 1.20620 0.88891 0.93979 0.91703 1.22012 0.96883 0.96531 1.00441 1.21282 0.95594 0.95888 1.00565 0.93129 0.89124 0.92777 0.92567 0.90573 0.89636 0.89891 0.88895 0.92670 0.74567 0.92533 0.92896 0.89623 0.90199 0.92468 0.92411 0.90971 0.97514 0.93392 0.94116 0.99133 0.93019 0.91075 0.92788 0.92509 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.42 -7.38 10.35 -148.98 -1.54 -8.92 16 3 C 0.09 1.24 2.61 30.60 0.08 1.32 16 4 H 0.08 0.76 7.79 -2.39 -0.02 0.75 16 5 C -0.14 -1.48 5.54 30.60 0.17 -1.31 16 6 C -0.11 -0.71 5.92 30.60 0.18 -0.53 16 7 C -0.11 -1.05 5.10 30.60 0.16 -0.89 16 8 C -0.09 -1.24 2.52 -11.56 -0.03 -1.26 16 9 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 10 C 0.51 10.86 7.15 87.66 0.63 11.48 16 11 O -0.59 -18.89 15.98 -3.03 -0.05 -18.94 16 12 N -0.71 -12.09 5.45 -463.06 -2.52 -14.61 16 13 C 0.12 2.66 5.43 86.38 0.47 3.13 16 14 C -0.11 -2.18 4.80 30.60 0.15 -2.04 16 15 C -0.07 -2.13 2.15 -10.77 -0.02 -2.15 16 16 C -0.12 -3.86 5.14 30.67 0.16 -3.71 16 17 C 0.14 5.91 6.52 86.36 0.56 6.47 16 18 N -0.61 -31.46 2.99 -699.09 -2.09 -33.55 16 19 C -0.27 -14.99 9.58 84.04 0.81 -14.19 16 20 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 21 C -0.05 -2.90 4.92 84.87 0.42 -2.48 16 22 N -0.94 -56.23 11.19 21.65 0.24 -55.99 16 23 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.17 8.44 5.30 86.36 0.46 8.89 16 28 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 29 C -0.10 -1.72 4.14 30.58 0.13 -1.60 16 30 H 0.05 0.41 8.08 -2.39 -0.02 0.39 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.39 7.87 -2.38 -0.02 0.37 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.63 7.87 -2.39 -0.02 0.61 16 35 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.09 0.51 7.56 -2.39 -0.02 0.50 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.42 4.02 7.89 -92.71 -0.73 3.28 16 40 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 2.10 6.50 -2.38 -0.02 2.09 16 47 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 49 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 50 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 51 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 52 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 53 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 54 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 55 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -75.12 418.51 1.87 -73.25 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.11 Total: 12.82 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.70 Total: -1.43 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -4.37 Total: -104.15 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.59 Total: -27.86 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.12 1.87 -73.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319032325.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.623 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds