Wall clock time and date at job start Tue Mar 31 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00034 * 2 1 4 4 H 1.09001 * 109.47035 * 330.00260 * 3 2 1 5 5 C 1.53002 * 109.47297 * 89.99892 * 3 2 1 6 6 C 1.52999 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.46891 * 299.99772 * 6 5 3 8 8 C 1.52995 * 109.47312 * 60.00397 * 7 6 5 9 9 H 1.09003 * 109.47487 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47278 * 59.99788 * 8 7 6 11 11 O 1.21278 * 120.00004 * 239.72820 * 10 8 7 12 12 N 1.34776 * 119.99807 * 59.99928 * 10 8 7 13 13 C 1.46505 * 119.99773 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.46969 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46930 * 180.02562 * 14 13 12 16 16 C 1.53045 * 109.46080 * 295.02492 * 15 14 13 17 17 C 1.53194 * 109.30971 * 178.60282 * 16 15 14 18 18 N 1.46922 * 108.76865 * 54.65960 * 17 16 15 19 19 C 1.36938 * 120.63234 * 126.35761 * 18 17 16 20 20 H 1.08003 * 119.99819 * 331.84297 * 19 18 17 21 21 C 1.38807 * 120.00010 * 151.84078 * 19 18 17 22 22 N 1.31616 * 120.00091 * 343.08384 * 21 19 18 23 23 Si 1.86800 * 119.99928 * 163.07837 * 21 19 18 24 24 H 1.48497 * 109.46932 * 60.00438 * 23 21 19 25 25 H 1.48504 * 109.46913 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47458 * 300.00201 * 23 21 19 27 27 C 1.46927 * 118.73693 * 306.37865 * 18 17 16 28 28 C 1.53043 * 109.46034 * 174.97172 * 15 14 13 29 29 C 1.52992 * 109.47203 * 210.00182 * 3 2 1 30 30 H 1.08995 * 109.46683 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46689 * 299.99927 * 1 2 3 32 32 H 1.08992 * 109.47178 * 60.00146 * 1 2 3 33 33 H 1.08999 * 109.47173 * 59.99864 * 5 3 2 34 34 H 1.09004 * 109.47050 * 299.99751 * 5 3 2 35 35 H 1.09003 * 109.46784 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.47361 * 60.00313 * 6 5 3 37 37 H 1.09003 * 109.47718 * 299.99899 * 7 6 5 38 38 H 1.09001 * 109.47431 * 180.02562 * 7 6 5 39 39 H 0.96998 * 120.00318 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.47284 * 300.00488 * 13 12 10 41 41 H 1.09003 * 109.46661 * 60.00483 * 13 12 10 42 42 H 1.09005 * 109.47199 * 299.99858 * 14 13 12 43 43 H 1.08994 * 109.47318 * 60.00475 * 14 13 12 44 44 H 1.08997 * 109.46465 * 55.00371 * 15 14 13 45 45 H 1.09000 * 109.49772 * 298.56978 * 16 15 14 46 46 H 1.08994 * 109.49372 * 58.66293 * 16 15 14 47 47 H 1.08999 * 109.59549 * 294.86715 * 17 16 15 48 48 H 1.09005 * 109.69416 * 174.50962 * 17 16 15 49 49 H 0.97003 * 119.99924 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.58465 * 293.82299 * 27 18 17 51 51 H 1.08998 * 109.58413 * 173.39322 * 27 18 17 52 52 H 1.08999 * 109.49904 * 301.33599 * 28 15 14 53 53 H 1.09007 * 109.49371 * 61.40120 * 28 15 14 54 54 H 1.08999 * 109.47240 * 59.99551 * 29 3 2 55 55 H 1.09003 * 109.47346 * 299.99464 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1694 1.4424 7 6 4.1880 3.1277 0.7211 8 6 3.9806 2.6618 -0.7214 9 1 4.9414 2.6325 -1.2355 10 6 3.0604 3.6208 -1.4317 11 8 2.0130 3.2242 -1.8969 12 7 3.4040 4.9182 -1.5548 13 6 2.5097 5.8504 -2.2458 14 6 3.1317 7.2482 -2.2463 15 6 2.1974 8.2219 -2.9674 16 6 2.0880 7.8262 -4.4417 17 6 1.1248 8.7821 -5.1526 18 7 1.5782 10.1618 -4.9305 19 6 1.7877 11.0062 -5.9880 20 1 2.0691 10.6061 -6.9510 21 6 1.6384 12.3762 -5.8224 22 7 0.9872 12.8459 -4.7796 23 14 2.3619 13.5533 -7.0796 24 1 1.7617 13.2855 -8.4112 25 1 2.0671 14.9516 -6.6755 26 1 3.8324 13.3588 -7.1512 27 6 1.8031 10.6183 -3.5522 28 6 2.7584 9.6417 -2.8590 29 6 3.3589 1.2633 -0.7212 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.8830 1.0775 1.9564 34 1 1.2569 1.8015 1.9563 35 1 2.9876 3.5011 2.4701 36 1 2.1738 3.8631 0.9288 37 1 4.8537 2.4340 1.2348 38 1 4.6312 4.1235 0.7214 39 1 4.2438 5.2346 -1.1865 40 1 2.3624 5.5183 -3.2735 41 1 1.5487 5.8801 -1.7322 42 1 3.2793 7.5806 -1.2186 43 1 4.0925 7.2183 -2.7600 44 1 1.2099 8.1857 -2.5074 45 1 3.0712 7.8864 -4.9085 46 1 1.7106 6.8065 -4.5176 47 1 0.1207 8.6576 -4.7472 48 1 1.1165 8.5677 -6.2213 49 1 0.8832 13.8034 -4.6637 50 1 0.8543 10.6436 -3.0163 51 1 2.2448 11.6146 -3.5648 52 1 2.8582 9.9143 -1.8084 53 1 3.7355 9.6844 -3.3404 54 1 3.2111 0.9313 -1.7489 55 1 4.0242 0.5694 -0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319032326.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:24 Heat of formation + Delta-G solvation = -114.560413 kcal Electronic energy + Delta-G solvation = -30348.041986 eV Core-core repulsion = 26383.256589 eV Total energy + Delta-G solvation = -3964.785398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62768 -39.70711 -39.15311 -37.14271 -36.63129 -35.07848 -33.09979 -32.08044 -31.59336 -31.02695 -29.79383 -27.35863 -26.96545 -25.05593 -24.09035 -23.41913 -23.33534 -22.15811 -22.04736 -20.74831 -20.25778 -18.70146 -17.91375 -17.49613 -16.96314 -16.81212 -16.71509 -16.38615 -16.06315 -15.73522 -15.36000 -15.29780 -15.23399 -14.98240 -14.83540 -14.48028 -14.31858 -14.06707 -13.87857 -13.77697 -13.25236 -13.16555 -13.03131 -13.01865 -12.92247 -12.79102 -12.60218 -12.53236 -12.29478 -12.14403 -11.96208 -11.92616 -11.82790 -11.80839 -11.52618 -11.45875 -11.37274 -11.05750 -10.98463 -10.54894 -10.50420 -10.37230 -9.97541 -8.66892 -7.87277 -5.33101 1.45986 1.48120 1.55235 1.68000 2.24186 2.51040 2.79570 3.26505 3.68320 3.73223 3.74438 3.78352 3.85727 3.93726 4.11515 4.13859 4.19348 4.23776 4.32268 4.38984 4.44769 4.46260 4.49669 4.51815 4.58729 4.63191 4.67334 4.70112 4.75225 4.78550 4.79650 4.89966 4.97932 5.02385 5.03744 5.06231 5.10385 5.12353 5.14805 5.22636 5.27344 5.31390 5.36284 5.39782 5.41200 5.47335 5.53133 5.56485 5.67126 5.80990 6.28578 6.39524 6.62059 7.15445 7.32330 7.87456 8.39111 9.18562 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.001878 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.215115 B =14908.546495 C =15207.492663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.071 3.929 4 H 0.064 0.936 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.099 4.099 9 H 0.131 0.869 10 C 0.511 3.489 11 O -0.582 6.582 12 N -0.715 5.715 13 C 0.124 3.876 14 C -0.107 4.107 15 C -0.070 4.070 16 C -0.116 4.116 17 C 0.137 3.863 18 N -0.612 5.612 19 C -0.264 4.264 20 H 0.064 0.936 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.174 3.826 28 C -0.120 4.120 29 C -0.094 4.094 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.047 0.953 49 H 0.250 0.750 50 H -0.009 1.009 51 H 0.051 0.949 52 H 0.070 0.930 53 H 0.053 0.947 54 H 0.054 0.946 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 -23.446 15.622 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.013 3.987 4 H 0.082 0.918 5 C -0.174 4.174 6 C -0.158 4.158 7 C -0.145 4.145 8 C -0.120 4.120 9 H 0.149 0.851 10 C 0.299 3.701 11 O -0.463 6.463 12 N -0.367 5.367 13 C 0.000 4.000 14 C -0.145 4.145 15 C -0.090 4.090 16 C -0.155 4.155 17 C 0.012 3.988 18 N -0.336 5.336 19 C -0.394 4.394 20 H 0.081 0.919 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.202 1.202 27 C 0.048 3.952 28 C -0.159 4.159 29 C -0.132 4.132 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.089 0.911 53 H 0.072 0.928 54 H 0.073 0.927 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.875 -23.712 15.311 29.588 hybrid contribution -0.427 1.451 -0.795 1.709 sum 8.448 -22.261 14.515 27.886 Atomic orbital electron populations 1.22850 0.80480 1.03430 0.99896 1.87788 1.20568 1.29066 1.95235 1.22534 0.95942 0.84166 0.96020 0.91772 1.22013 1.01337 0.97781 0.96312 1.21540 0.96830 0.95594 1.01830 1.21626 0.97468 1.03669 0.91746 1.21436 0.99492 0.92767 0.98329 0.85099 1.21212 0.86851 0.83222 0.78851 1.90642 1.27242 1.78021 1.50370 1.45959 1.24352 1.08237 1.58192 1.21284 0.93154 0.88820 0.96755 1.21688 0.99053 0.91924 1.01814 1.20883 0.98714 0.94189 0.95165 1.21961 0.99699 0.98131 0.95727 1.21072 0.94689 0.85004 0.98026 1.44342 1.77505 1.09051 1.02652 1.19480 1.39370 0.88422 0.92143 0.91862 1.25828 0.99649 0.99278 1.00073 1.70189 1.43389 1.12335 1.32289 0.85329 0.78624 0.77613 0.78813 1.20242 1.21945 1.20239 1.20626 0.94473 0.96616 0.83478 1.22016 0.98899 0.95193 0.99789 1.21348 0.95351 0.95887 1.00618 0.88149 0.93667 0.94928 0.90278 0.92684 0.89621 0.93979 0.88298 0.89076 0.74720 0.92552 0.93009 0.89701 0.90305 0.92498 0.92454 0.90932 0.97518 0.93394 0.94108 0.99118 0.93028 0.91100 0.92831 0.92668 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 113.37 1.23 1.77 16 2 O -0.41 -9.14 10.35 -148.98 -1.54 -10.68 16 3 C 0.07 1.44 2.31 30.59 0.07 1.51 16 4 H 0.06 1.69 5.16 -2.39 -0.01 1.67 16 5 C -0.14 -2.12 5.54 30.59 0.17 -1.95 16 6 C -0.12 -1.49 5.70 30.59 0.17 -1.32 16 7 C -0.11 -0.86 5.35 30.59 0.16 -0.69 16 8 C -0.10 -1.22 3.01 -11.52 -0.03 -1.25 16 9 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 10 C 0.51 10.03 5.64 87.66 0.49 10.53 16 11 O -0.58 -16.97 13.67 -3.02 -0.04 -17.02 16 12 N -0.72 -11.47 5.45 -463.06 -2.52 -14.00 16 13 C 0.12 2.61 5.43 86.38 0.47 3.08 16 14 C -0.11 -2.16 4.80 30.59 0.15 -2.01 16 15 C -0.07 -2.08 2.15 -10.76 -0.02 -2.10 16 16 C -0.12 -3.81 5.15 30.67 0.16 -3.65 16 17 C 0.14 5.88 6.52 86.36 0.56 6.44 16 18 N -0.61 -31.41 2.99 -699.10 -2.09 -33.50 16 19 C -0.26 -14.84 9.58 84.03 0.81 -14.03 16 20 H 0.06 3.48 7.89 -2.91 -0.02 3.45 16 21 C -0.05 -3.01 4.92 84.86 0.42 -2.60 16 22 N -0.94 -56.20 11.20 21.65 0.24 -55.96 16 23 Si 0.97 45.30 29.59 68.60 2.03 47.33 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C 0.17 8.41 5.30 86.36 0.46 8.87 16 28 C -0.12 -4.23 5.36 30.67 0.16 -4.06 16 29 C -0.09 -1.57 4.74 30.61 0.15 -1.43 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 0.73 7.87 -2.39 -0.02 0.71 16 32 H 0.03 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.90 7.87 -2.39 -0.02 0.88 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.04 0.71 7.22 -2.39 -0.02 0.70 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.40 7.57 -2.39 -0.02 0.38 16 39 H 0.42 3.85 7.89 -92.71 -0.73 3.12 16 40 H 0.06 1.38 6.54 -2.39 -0.02 1.37 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 2.08 6.50 -2.39 -0.02 2.06 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.05 2.03 7.93 -2.38 -0.02 2.01 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 51 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 52 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 53 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 54 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 55 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.16 412.00 1.76 -71.40 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.12 Total: 15.32 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.57 Total: -2.89 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.37 Total: -103.46 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.58 Total: -27.70 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.16 1.76 -71.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319032326.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.162 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds