Wall clock time and date at job start Tue Mar 31 2020 22:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00290 * 2 1 4 4 H 1.08997 * 109.46902 * 29.99808 * 3 2 1 5 5 C 1.52998 * 109.47101 * 270.00263 * 3 2 1 6 6 C 1.53006 * 109.46772 * 299.99866 * 5 3 2 7 7 C 1.52998 * 109.47254 * 299.99777 * 6 5 3 8 8 C 1.52998 * 109.47039 * 59.99831 * 7 6 5 9 9 H 1.09000 * 109.46834 * 60.00058 * 8 7 6 10 10 C 1.50698 * 109.47424 * 179.97438 * 8 7 6 11 11 O 1.21284 * 119.99771 * 120.00356 * 10 8 7 12 12 N 1.34778 * 120.00156 * 300.00671 * 10 8 7 13 13 C 1.46501 * 119.99936 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.46815 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47100 * 180.02562 * 14 13 12 16 16 C 1.53035 * 109.46236 * 184.99960 * 15 14 13 17 17 C 1.53196 * 109.31423 * 178.61511 * 16 15 14 18 18 N 1.46927 * 108.77634 * 54.63571 * 17 16 15 19 19 C 1.36928 * 120.63088 * 126.36721 * 18 17 16 20 20 H 1.08007 * 120.00500 * 332.14013 * 19 18 17 21 21 C 1.38814 * 119.99963 * 152.13855 * 19 18 17 22 22 N 1.31619 * 119.99967 * 343.00388 * 21 19 18 23 23 Si 1.86804 * 119.99920 * 162.99959 * 21 19 18 24 24 H 1.48499 * 109.47455 * 266.23556 * 23 21 19 25 25 H 1.48503 * 109.47084 * 26.23946 * 23 21 19 26 26 H 1.48500 * 109.47032 * 146.23813 * 23 21 19 27 27 C 1.46923 * 118.73739 * 306.64523 * 18 17 16 28 28 C 1.52765 * 109.00780 * 53.30755 * 27 18 17 29 29 C 1.52998 * 109.47725 * 300.00483 * 8 7 6 30 30 H 1.08989 * 109.46980 * 59.99895 * 1 2 3 31 31 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47010 * 299.99887 * 1 2 3 33 33 H 1.09000 * 109.47288 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47378 * 59.99282 * 5 3 2 35 35 H 1.09003 * 109.46646 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47109 * 60.00019 * 6 5 3 37 37 H 1.09002 * 109.46833 * 300.00446 * 7 6 5 38 38 H 1.08997 * 109.47452 * 180.02562 * 7 6 5 39 39 H 0.97000 * 119.99626 * 359.97438 * 12 10 8 40 40 H 1.09003 * 109.46637 * 60.00146 * 13 12 10 41 41 H 1.09002 * 109.46996 * 300.00161 * 13 12 10 42 42 H 1.09003 * 109.47281 * 60.00685 * 14 13 12 43 43 H 1.09002 * 109.47589 * 299.99943 * 14 13 12 44 44 H 1.08997 * 109.45243 * 304.97148 * 15 14 13 45 45 H 1.08999 * 109.49620 * 58.66589 * 16 15 14 46 46 H 1.09000 * 109.52798 * 298.58443 * 16 15 14 47 47 H 1.09006 * 109.58473 * 294.84900 * 17 16 15 48 48 H 1.09002 * 109.70686 * 174.49626 * 17 16 15 49 49 H 0.97001 * 119.99475 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.58551 * 173.13817 * 27 18 17 51 51 H 1.09001 * 109.58984 * 293.56422 * 27 18 17 52 52 H 1.09007 * 109.56262 * 185.55083 * 28 27 18 53 53 H 1.09005 * 109.38551 * 65.51645 * 28 27 18 54 54 H 1.08994 * 109.47782 * 179.97438 * 29 8 7 55 55 H 1.09002 * 109.47073 * 299.99952 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7972 -2.1637 7 6 4.5002 0.7550 -1.4425 8 6 4.2928 0.2892 0.0000 9 1 3.8494 -0.7066 0.0000 10 6 5.6212 0.2470 0.7102 11 8 5.8036 0.9291 1.6963 12 7 6.6067 -0.5488 0.2496 13 6 7.8983 -0.5894 0.9398 14 6 8.8313 -1.5643 0.2188 15 6 10.1800 -1.6072 0.9399 16 6 11.1531 -2.4850 0.1495 17 6 12.5123 -2.4977 0.8560 18 7 12.3167 -2.9179 2.2503 19 6 13.0345 -3.9608 2.7719 20 1 13.3904 -4.7488 2.1245 21 6 13.3048 -4.0055 4.1327 22 7 13.1782 -2.9190 4.8648 23 14 13.8480 -5.6076 4.9250 24 1 12.6629 -6.3167 5.4708 25 1 14.5116 -6.4626 3.9082 26 1 14.8014 -5.3171 6.0258 27 6 11.3319 -2.2017 3.0724 28 6 9.9899 -2.1887 2.3426 29 6 3.3590 1.2631 0.7213 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6607 2.7672 -1.4425 34 1 1.2569 1.8013 -1.9564 35 1 3.2996 1.1294 -3.1913 36 1 2.7081 -0.1986 -2.1637 37 1 4.9435 1.7508 -1.4426 38 1 5.1656 0.0614 -1.9566 39 1 6.4607 -1.0946 -0.5389 40 1 7.7507 -0.9210 1.9676 41 1 8.3419 0.4063 0.9394 42 1 8.9790 -1.2330 -0.8092 43 1 8.3875 -2.5599 0.2195 44 1 10.5827 -0.5973 1.0171 45 1 11.2700 -2.0834 -0.8570 46 1 10.7631 -3.5013 0.0927 47 1 12.9454 -1.4976 0.8331 48 1 13.1810 -3.1970 0.3540 49 1 13.3668 -2.9504 5.8158 50 1 11.2198 -2.7072 4.0316 51 1 11.6667 -1.1770 3.2340 52 1 9.2788 -1.5762 2.8971 53 1 9.6100 -3.2076 2.2657 54 1 3.2109 0.9311 1.7488 55 1 3.8023 2.2589 0.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319032328.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:29 Heat of formation + Delta-G solvation = -118.186907 kcal Electronic energy + Delta-G solvation = -29915.505687 eV Core-core repulsion = 25950.563032 eV Total energy + Delta-G solvation = -3964.942654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33390 -39.84546 -39.39484 -36.87657 -36.61842 -35.07706 -33.14248 -32.00909 -31.51245 -31.22667 -29.86306 -27.32992 -26.95282 -25.07338 -24.10325 -23.55960 -23.36880 -22.12806 -21.39804 -20.66092 -20.42826 -18.70220 -18.28214 -17.35013 -16.90406 -16.69162 -16.64919 -16.28453 -16.11713 -15.74310 -15.68229 -15.29745 -15.16976 -14.89415 -14.79613 -14.45954 -14.31349 -13.93131 -13.87172 -13.57107 -13.50595 -13.27810 -13.06604 -12.92584 -12.82995 -12.71531 -12.57833 -12.33955 -12.29268 -12.21212 -12.15882 -11.88727 -11.78735 -11.77061 -11.51571 -11.39894 -11.16754 -11.08614 -10.98649 -10.66607 -10.53480 -10.35064 -10.04834 -8.67231 -7.87009 -5.32776 1.45124 1.46660 1.55969 1.65234 2.22237 2.50778 2.89630 3.26896 3.59608 3.70611 3.73660 3.84342 3.86010 3.95565 4.09895 4.15428 4.20788 4.28103 4.33846 4.41604 4.43443 4.46112 4.54940 4.58026 4.60130 4.65643 4.70537 4.72701 4.74646 4.80194 4.87140 4.90012 4.98024 5.04572 5.06631 5.09336 5.12287 5.15746 5.18271 5.28187 5.30854 5.31625 5.35573 5.42422 5.45210 5.48835 5.52780 5.56967 5.67036 5.79765 6.33029 6.39422 6.58903 7.15058 7.28688 7.87978 8.39561 9.19113 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001804 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.326489 B =15520.740427 C =16012.279689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.090 3.910 4 H 0.070 0.930 5 C -0.141 4.141 6 C -0.108 4.108 7 C -0.106 4.106 8 C -0.091 4.091 9 H 0.109 0.891 10 C 0.509 3.491 11 O -0.591 6.591 12 N -0.715 5.715 13 C 0.120 3.880 14 C -0.106 4.106 15 C -0.071 4.071 16 C -0.113 4.113 17 C 0.136 3.864 18 N -0.611 5.611 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.056 4.056 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.265 1.265 26 H -0.296 1.296 27 C 0.175 3.825 28 C -0.124 4.124 29 C -0.096 4.096 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.416 0.584 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.010 0.990 48 H 0.053 0.947 49 H 0.248 0.752 50 H 0.047 0.953 51 H -0.011 1.011 52 H 0.057 0.943 53 H 0.050 0.950 54 H 0.053 0.947 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.713 7.936 -19.058 33.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.033 3.967 4 H 0.088 0.912 5 C -0.179 4.179 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.113 4.113 9 H 0.127 0.873 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.367 5.367 13 C -0.003 4.003 14 C -0.143 4.143 15 C -0.090 4.090 16 C -0.151 4.151 17 C 0.011 3.989 18 N -0.335 5.335 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.251 4.251 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.214 1.214 25 H -0.190 1.190 26 H -0.223 1.223 27 C 0.050 3.950 28 C -0.163 4.163 29 C -0.134 4.134 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.253 0.747 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.007 0.993 52 H 0.076 0.924 53 H 0.069 0.931 54 H 0.072 0.928 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.401 8.253 -18.223 33.124 hybrid contribution 0.511 -0.575 1.133 1.369 sum -25.890 7.678 -17.090 31.958 Atomic orbital electron populations 1.22917 0.80159 1.03471 1.00547 1.87887 1.20715 1.28126 1.95175 1.22151 0.93633 0.84783 0.96158 0.91178 1.22051 1.00870 0.99852 0.95100 1.21389 0.93869 1.00336 0.98933 1.21542 0.98960 1.02053 0.91804 1.21220 0.90624 1.02813 0.96601 0.87307 1.21338 0.86802 0.78304 0.83883 1.90690 1.83085 1.44713 1.28623 1.45957 1.13076 1.45352 1.32325 1.21322 0.83155 0.99683 0.96186 1.21695 0.93424 0.99360 0.99863 1.20897 0.95206 0.98745 0.94162 1.21892 0.95036 0.99673 0.98545 1.21120 0.96180 0.96642 0.84952 1.44325 1.43057 1.37217 1.08922 1.19560 1.28254 0.99031 0.92231 0.91456 1.25852 1.00838 0.99865 0.98556 1.70212 1.54452 1.27696 1.06043 0.85240 0.77391 0.79771 0.77991 1.21363 1.18977 1.22256 1.20478 0.87303 0.93051 0.94196 1.22021 0.97335 0.99998 0.96960 1.21414 0.93783 0.99658 0.98510 0.92955 0.89018 0.93844 0.90437 0.90686 0.90318 0.91273 0.91896 0.89779 0.74717 0.93366 0.92737 0.88861 0.90521 0.92338 0.89501 0.92392 0.97234 0.92861 0.94249 0.93471 0.99266 0.92410 0.93086 0.92818 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -5.98 9.00 -148.98 -1.34 -7.32 16 3 C 0.09 1.20 2.92 30.59 0.09 1.29 16 4 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 5 C -0.14 -1.37 5.63 30.60 0.17 -1.20 16 6 C -0.11 -1.02 5.78 30.60 0.18 -0.84 16 7 C -0.11 -1.22 5.10 30.59 0.16 -1.07 16 8 C -0.09 -1.54 2.38 -11.54 -0.03 -1.57 16 9 H 0.11 1.78 7.68 -2.39 -0.02 1.76 16 10 C 0.51 12.19 7.15 87.66 0.63 12.82 16 11 O -0.59 -20.00 15.98 -3.04 -0.05 -20.04 16 12 N -0.72 -14.14 5.45 -463.05 -2.52 -16.67 16 13 C 0.12 2.96 5.43 86.38 0.47 3.43 16 14 C -0.11 -2.28 4.80 30.59 0.15 -2.13 16 15 C -0.07 -2.16 2.15 -10.77 -0.02 -2.18 16 16 C -0.11 -3.50 5.36 30.67 0.16 -3.33 16 17 C 0.14 5.65 6.52 86.36 0.56 6.22 16 18 N -0.61 -31.62 3.00 -699.89 -2.10 -33.72 16 19 C -0.26 -14.72 9.58 84.04 0.81 -13.92 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 21 C -0.06 -3.24 4.91 84.86 0.42 -2.82 16 22 N -0.94 -57.72 11.20 21.65 0.24 -57.47 16 23 Si 0.97 46.11 29.59 68.60 2.03 48.14 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 C 0.18 8.88 5.28 86.22 0.45 9.33 16 28 C -0.12 -4.77 5.13 30.53 0.16 -4.61 16 29 C -0.10 -1.73 4.23 30.59 0.13 -1.60 16 30 H 0.05 0.36 7.87 -2.39 -0.02 0.34 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.38 8.08 -2.39 -0.02 0.36 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.58 7.87 -2.38 -0.02 0.56 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.71 7.56 -2.39 -0.02 0.69 16 39 H 0.42 5.29 7.89 -92.71 -0.73 4.56 16 40 H 0.05 1.44 6.53 -2.39 -0.02 1.42 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 48 H 0.05 2.15 7.93 -2.39 -0.02 2.14 16 49 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 50 H 0.05 2.72 6.06 -2.38 -0.01 2.70 16 51 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 52 H 0.06 2.11 6.50 -2.38 -0.02 2.09 16 53 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 54 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 55 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -74.22 416.41 2.07 -72.14 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.11 Total: 15.66 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.70 Total: -0.72 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.38 Total: -107.86 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.39 Total: -27.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.22 2.07 -72.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319032328.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.043 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds