Wall clock time and date at job start Tue Mar 31 2020 22:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00282 * 2 1 4 4 H 1.09005 * 109.47041 * 29.99477 * 3 2 1 5 5 C 1.53003 * 109.47400 * 270.00285 * 3 2 1 6 6 C 1.52991 * 109.47370 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47209 * 59.99986 * 6 5 3 8 8 C 1.53009 * 109.47092 * 299.99775 * 7 6 5 9 9 H 1.09002 * 109.47189 * 300.00134 * 8 7 6 10 10 C 1.50695 * 109.47045 * 179.97438 * 8 7 6 11 11 O 1.21281 * 119.99625 * 239.99774 * 10 8 7 12 12 N 1.34777 * 120.00069 * 59.73126 * 10 8 7 13 13 C 1.46498 * 119.99771 * 180.27285 * 12 10 8 14 14 C 1.53007 * 109.47001 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47228 * 179.97438 * 14 13 12 16 16 C 1.53038 * 109.46068 * 295.02877 * 15 14 13 17 17 C 1.53188 * 109.31444 * 178.60113 * 16 15 14 18 18 N 1.46928 * 108.76286 * 54.65556 * 17 16 15 19 19 C 1.36934 * 120.63201 * 126.41040 * 18 17 16 20 20 H 1.08007 * 119.99723 * 331.81626 * 19 18 17 21 21 C 1.38806 * 120.00350 * 151.82143 * 19 18 17 22 22 N 1.31626 * 120.00001 * 343.07417 * 21 19 18 23 23 Si 1.86802 * 120.00449 * 163.07828 * 21 19 18 24 24 H 1.48503 * 109.46991 * 59.99752 * 23 21 19 25 25 H 1.48496 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46836 * 300.00232 * 23 21 19 27 27 C 1.46920 * 118.73875 * 306.37911 * 18 17 16 28 28 C 1.53037 * 109.45970 * 174.97410 * 15 14 13 29 29 C 1.52997 * 109.47516 * 149.99716 * 3 2 1 30 30 H 1.09000 * 109.47238 * 60.00260 * 1 2 3 31 31 H 1.09008 * 109.46857 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47167 * 299.99911 * 1 2 3 33 33 H 1.09002 * 109.47087 * 59.99301 * 5 3 2 34 34 H 1.09005 * 109.46364 * 299.99607 * 5 3 2 35 35 H 1.09002 * 109.47119 * 299.99823 * 6 5 3 36 36 H 1.09004 * 109.47302 * 179.97438 * 6 5 3 37 37 H 1.08997 * 109.47400 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47554 * 59.99276 * 7 6 5 39 39 H 0.96998 * 120.00229 * 0.26691 * 12 10 8 40 40 H 1.09000 * 109.47187 * 299.99561 * 13 12 10 41 41 H 1.09002 * 109.47088 * 59.99924 * 13 12 10 42 42 H 1.09000 * 109.47141 * 300.00017 * 14 13 12 43 43 H 1.08993 * 109.47047 * 60.00101 * 14 13 12 44 44 H 1.08995 * 109.45737 * 54.99891 * 15 14 13 45 45 H 1.09007 * 109.49471 * 298.57012 * 16 15 14 46 46 H 1.09006 * 109.49883 * 58.66070 * 16 15 14 47 47 H 1.08996 * 109.59861 * 294.86689 * 17 16 15 48 48 H 1.09005 * 109.70358 * 174.50468 * 17 16 15 49 49 H 0.96998 * 120.00199 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.59005 * 293.82584 * 27 18 17 51 51 H 1.09004 * 109.70571 * 173.46495 * 27 18 17 52 52 H 1.08998 * 109.49811 * 301.33575 * 28 15 14 53 53 H 1.08998 * 109.49686 * 61.43014 * 28 15 14 54 54 H 1.09002 * 109.46871 * 60.00258 * 29 3 2 55 55 H 1.09004 * 109.46899 * 300.00363 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8395 3.1692 -1.4425 7 6 4.1881 3.1276 -0.7211 8 6 3.9807 2.6617 0.7215 9 1 3.3151 3.3554 1.2352 10 6 5.3091 2.6200 1.4318 11 8 5.7177 1.5753 1.8927 12 7 6.0454 3.7426 1.5501 13 6 7.3396 3.7009 2.2354 14 6 7.9648 5.0973 2.2302 15 6 9.3161 5.0539 2.9464 16 6 9.1000 4.7118 4.4224 17 6 10.4572 4.6348 5.1286 18 7 11.1806 5.8932 4.9007 19 6 11.6740 6.6151 5.9545 20 1 11.1922 6.5597 6.9196 21 6 12.7930 7.4181 5.7825 22 7 13.5733 7.2444 4.7367 23 14 13.1919 8.7453 7.0350 24 1 13.3986 8.1225 8.3672 25 1 14.4287 9.4575 6.6248 26 1 12.0658 9.7104 7.1092 27 6 11.3652 6.3620 3.5205 28 6 9.9978 6.4193 2.8323 29 6 3.3589 1.2632 0.7213 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8014 -1.9563 34 1 2.8830 1.0774 -1.9563 35 1 2.1739 3.8629 -0.9288 36 1 2.9877 3.5010 -2.4702 37 1 4.6309 4.1236 -0.7207 38 1 4.8536 2.4338 -1.2347 39 1 5.7186 4.5782 1.1815 40 1 7.1954 3.3709 3.2642 41 1 8.0014 3.0049 1.7199 42 1 8.1090 5.4270 1.2012 43 1 7.3032 5.7936 2.7454 44 1 9.9468 4.2935 2.4860 45 1 8.4899 5.4850 4.8894 46 1 8.5933 3.7500 4.5026 47 1 11.0337 3.8034 4.7231 48 1 10.3072 4.4882 6.1982 49 1 14.3555 7.8052 4.6167 50 1 12.0157 5.6713 2.9839 51 1 11.8131 7.3557 3.5267 52 1 10.1302 6.6730 1.7805 53 1 9.3792 7.1762 3.3144 54 1 4.0242 0.5693 0.2074 55 1 3.2111 0.9313 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319032330.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:34 Heat of formation + Delta-G solvation = -119.873285 kcal Electronic energy + Delta-G solvation = -29634.375163 eV Core-core repulsion = 25669.359381 eV Total energy + Delta-G solvation = -3965.015781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32463 -39.79804 -39.37983 -37.21872 -36.67625 -35.07081 -33.10380 -32.10128 -31.57210 -31.07889 -29.79849 -27.32196 -26.95782 -25.09428 -24.12996 -23.43432 -23.28918 -22.14924 -21.48761 -20.80658 -20.50667 -18.69482 -18.37884 -17.33060 -16.88632 -16.78277 -16.61363 -16.30549 -16.02536 -15.75597 -15.65012 -15.29321 -15.22016 -14.90929 -14.75623 -14.61005 -14.34573 -14.15256 -13.92275 -13.79778 -13.45204 -13.19471 -13.02971 -12.91864 -12.80616 -12.62671 -12.52680 -12.37762 -12.28171 -12.13242 -12.03722 -11.93366 -11.80574 -11.65975 -11.51602 -11.47913 -11.46976 -11.10073 -10.98116 -10.77299 -10.51899 -10.36953 -10.04578 -8.65987 -7.86523 -5.32333 1.46615 1.48565 1.55851 1.63825 2.15492 2.51726 2.84349 3.27308 3.56222 3.70486 3.73245 3.85694 3.89477 3.94235 4.07383 4.13351 4.15923 4.23557 4.31664 4.35409 4.41907 4.44176 4.47249 4.53832 4.56272 4.59826 4.65188 4.67676 4.76029 4.79640 4.86653 4.90737 4.99527 5.04102 5.05253 5.07949 5.11170 5.12532 5.17473 5.22911 5.27967 5.30085 5.36909 5.41362 5.44187 5.47837 5.49441 5.56993 5.67737 5.81917 6.31512 6.40123 6.59067 7.16229 7.28601 7.88246 8.40001 9.19287 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.001640 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.639135 B =17067.811708 C =17408.687874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.091 3.909 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.093 4.093 9 H 0.127 0.873 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.714 5.714 13 C 0.122 3.878 14 C -0.106 4.106 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.611 5.611 19 C -0.266 4.266 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.174 3.826 28 C -0.120 4.120 29 C -0.095 4.095 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.417 0.583 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.048 0.952 49 H 0.250 0.750 50 H -0.010 1.010 51 H 0.051 0.949 52 H 0.071 0.929 53 H 0.053 0.947 54 H 0.052 0.948 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.107 -5.995 -15.448 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.179 4.179 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.114 4.114 9 H 0.144 0.856 10 C 0.298 3.702 11 O -0.470 6.470 12 N -0.366 5.366 13 C -0.002 4.002 14 C -0.144 4.144 15 C -0.090 4.090 16 C -0.156 4.156 17 C 0.012 3.988 18 N -0.335 5.335 19 C -0.396 4.396 20 H 0.081 0.919 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.202 1.202 27 C 0.048 3.952 28 C -0.159 4.159 29 C -0.133 4.133 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.089 0.911 53 H 0.072 0.928 54 H 0.070 0.930 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.550 -6.816 -15.142 33.028 hybrid contribution 0.838 0.753 0.745 1.351 sum -27.712 -6.062 -14.397 31.812 Atomic orbital electron populations 1.22958 0.79620 1.03596 1.00925 1.87896 1.21379 1.28948 1.95253 1.22191 0.93892 0.84360 0.96219 0.90298 1.22055 1.01886 0.97852 0.96094 1.21472 0.95444 0.95890 1.01800 1.21607 0.98956 1.02471 0.91815 1.21280 0.92921 0.98970 0.98217 0.85568 1.21171 0.87090 0.83004 0.78932 1.90711 1.73305 1.32338 1.50651 1.45929 1.20333 1.11982 1.58360 1.21324 0.83943 0.98072 0.96882 1.21688 0.95569 0.95250 1.01909 1.20889 0.95995 0.96966 0.95188 1.21965 0.96814 1.01054 0.95726 1.21075 0.92394 0.87329 0.98025 1.44326 1.64470 1.22015 1.02650 1.19494 1.06548 1.21337 0.92198 0.91856 1.25813 0.95315 1.03525 1.00003 1.70192 1.15164 1.40715 1.32115 0.85333 0.76877 0.79388 0.78800 1.20274 1.21927 1.20244 1.20620 0.93194 0.97910 0.83466 1.22011 0.97126 0.96912 0.99814 1.21300 0.95599 0.95874 1.00545 0.92751 0.89114 0.93176 0.90591 0.92510 0.89694 0.89823 0.88859 0.92596 0.74569 0.92477 0.92958 0.89620 0.90206 0.92492 0.92393 0.90949 0.97526 0.93371 0.94123 0.99149 0.93024 0.91080 0.92780 0.92955 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.42 -7.38 10.35 -148.98 -1.54 -8.92 16 3 C 0.09 1.24 2.61 30.59 0.08 1.32 16 4 H 0.08 0.77 7.79 -2.38 -0.02 0.75 16 5 C -0.14 -1.46 5.54 30.59 0.17 -1.29 16 6 C -0.11 -0.69 5.92 30.59 0.18 -0.50 16 7 C -0.11 -1.01 5.10 30.60 0.16 -0.86 16 8 C -0.09 -1.24 2.53 -11.52 -0.03 -1.27 16 9 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 10 C 0.51 10.86 7.16 87.66 0.63 11.49 16 11 O -0.59 -18.90 15.98 -3.03 -0.05 -18.94 16 12 N -0.71 -12.09 5.44 -463.05 -2.52 -14.61 16 13 C 0.12 2.66 5.43 86.38 0.47 3.13 16 14 C -0.11 -2.18 4.80 30.60 0.15 -2.04 16 15 C -0.07 -2.13 2.15 -10.77 -0.02 -2.15 16 16 C -0.12 -3.86 5.14 30.67 0.16 -3.70 16 17 C 0.14 5.90 6.52 86.36 0.56 6.46 16 18 N -0.61 -31.44 2.99 -699.10 -2.09 -33.53 16 19 C -0.27 -14.97 9.58 84.03 0.81 -14.16 16 20 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 21 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 22 N -0.94 -56.26 11.19 21.65 0.24 -56.01 16 23 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 C 0.17 8.44 5.30 86.36 0.46 8.90 16 28 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 29 C -0.09 -1.73 4.14 30.61 0.13 -1.60 16 30 H 0.05 0.40 7.87 -2.39 -0.02 0.38 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.08 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.09 0.48 7.55 -2.39 -0.02 0.46 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.42 4.02 7.88 -92.71 -0.73 3.29 16 40 H 0.06 1.44 6.53 -2.39 -0.02 1.43 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 2.10 6.50 -2.38 -0.02 2.09 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 49 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 50 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 51 H 0.05 2.84 6.07 -2.38 -0.01 2.83 16 52 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 53 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 54 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 55 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 Total: -1.00 -75.10 418.49 1.87 -73.23 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.11 Total: 12.78 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.70 Total: -1.35 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.37 Total: -104.16 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.59 Total: -27.87 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.10 1.87 -73.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319032330.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.642 kcal (2) G-P(sol) polarization free energy of solvation -75.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds