Wall clock time and date at job start Tue Mar 31 2020 22:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00223 * 2 1 4 4 C 1.50700 * 119.99927 * 180.02562 * 2 1 3 5 5 H 1.09005 * 109.46898 * 354.99791 * 4 2 1 6 6 C 1.53003 * 109.47339 * 115.00188 * 4 2 1 7 7 C 1.50703 * 109.46928 * 184.99957 * 6 4 2 8 8 O 1.21276 * 119.99975 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99457 * 179.72170 * 7 6 4 10 10 C 1.46507 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.45968 * 60.03016 * 11 10 9 13 13 C 1.53035 * 109.45736 * 300.06911 * 11 10 9 14 14 C 1.53192 * 109.31203 * 178.61482 * 13 11 10 15 15 N 1.46918 * 108.77575 * 54.63552 * 14 13 11 16 16 C 1.36941 * 120.63093 * 126.41538 * 15 14 13 17 17 H 1.08004 * 120.00057 * 207.66303 * 16 15 14 18 18 C 1.38809 * 120.00035 * 27.66582 * 16 15 14 19 19 N 1.31614 * 120.00001 * 17.36578 * 18 16 15 20 20 Si 1.86801 * 119.99739 * 197.37047 * 18 16 15 21 21 H 1.48497 * 109.47444 * 89.99745 * 20 18 16 22 22 H 1.48502 * 109.46694 * 209.99892 * 20 18 16 23 23 H 1.48500 * 109.47162 * 329.99414 * 20 18 16 24 24 C 1.46925 * 118.73781 * 306.39435 * 15 14 13 25 25 C 1.53040 * 109.45967 * 180.02562 * 11 10 9 26 26 O 1.42902 * 109.46999 * 235.00299 * 4 2 1 27 27 C 1.42902 * 114.00081 * 90.00022 * 26 4 2 28 28 C 1.53004 * 109.46948 * 179.97438 * 27 26 4 29 29 H 1.08003 * 119.99711 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00530 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46899 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47306 * 299.99816 * 3 2 1 33 33 H 1.09000 * 109.46768 * 59.99756 * 3 2 1 34 34 H 1.08995 * 109.47120 * 65.00039 * 6 4 2 35 35 H 1.09000 * 109.46830 * 305.00060 * 6 4 2 36 36 H 0.97003 * 120.00520 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.46879 * 300.00438 * 10 9 7 38 38 H 1.09000 * 109.46586 * 59.99902 * 10 9 7 39 39 H 1.08995 * 109.47038 * 59.99634 * 12 11 10 40 40 H 1.08993 * 109.46908 * 180.02562 * 12 11 10 41 41 H 1.09004 * 109.46818 * 299.99943 * 12 11 10 42 42 H 1.09000 * 109.50463 * 298.56653 * 13 11 10 43 43 H 1.09004 * 109.50059 * 58.66883 * 13 11 10 44 44 H 1.09004 * 109.58548 * 294.85041 * 14 13 11 45 45 H 1.09004 * 109.59114 * 174.42832 * 14 13 11 46 46 H 0.97006 * 120.00125 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.58871 * 293.81791 * 24 15 14 48 48 H 1.09001 * 109.70454 * 173.46581 * 24 15 14 49 49 H 1.09002 * 109.49194 * 301.33405 * 25 11 10 50 50 H 1.08996 * 109.49964 * 61.43243 * 25 11 10 51 51 H 1.08997 * 109.46953 * 299.99521 * 27 26 4 52 52 H 1.08998 * 109.47348 * 59.99807 * 27 26 4 53 53 H 1.09005 * 109.46695 * 179.97438 * 28 27 26 54 54 H 1.08997 * 109.47066 * 299.99652 * 28 27 26 55 55 H 1.08998 * 109.47091 * 59.99849 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3584 -2.1317 0.0887 6 6 2.8464 -1.4414 -1.3080 7 6 3.5008 -2.7979 -1.3625 8 8 3.3549 -3.5788 -0.4461 9 7 4.2432 -3.1453 -2.4323 10 6 4.8799 -4.4638 -2.4851 11 6 5.6576 -4.6025 -3.7954 12 6 6.7312 -3.5149 -3.8684 13 6 4.6969 -4.4504 -4.9770 14 6 5.4844 -4.5553 -6.2868 15 7 6.2423 -5.8139 -6.2835 16 6 6.1255 -6.7015 -7.3198 17 1 6.2900 -7.7552 -7.1494 18 6 5.7957 -6.2468 -8.5892 19 7 5.9275 -4.9714 -8.8862 20 14 5.1648 -7.4452 -9.8758 21 1 3.6846 -7.5280 -9.7915 22 1 5.5581 -6.9724 -11.2275 23 1 5.7505 -8.7877 -9.6312 24 6 7.1282 -6.1020 -5.1473 25 6 6.3220 -5.9800 -3.8505 26 8 2.9708 -1.3318 1.1031 27 6 2.4137 -1.8776 2.3005 28 6 3.4681 -1.8571 3.4090 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 3.1352 1.1058 0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8001 1.8767 0.8900 34 1 3.6116 -0.6667 -1.3556 35 1 2.1657 -1.3322 -2.1522 36 1 4.3566 -2.5222 -3.1670 37 1 5.5644 -4.5706 -1.6436 38 1 4.1152 -5.2388 -2.4322 39 1 7.4152 -3.6225 -3.0266 40 1 7.2851 -3.6133 -4.8020 41 1 6.2579 -2.5338 -3.8289 42 1 3.9463 -5.2398 -4.9396 43 1 4.2064 -3.4784 -4.9243 44 1 6.1731 -3.7143 -6.3675 45 1 4.7937 -4.5469 -7.1301 46 1 5.6967 -4.6536 -9.7732 47 1 7.9510 -5.3871 -5.1351 48 1 7.5244 -7.1135 -5.2375 49 1 6.9883 -6.0970 -2.9958 50 1 5.5558 -6.7548 -3.8239 51 1 1.5536 -1.2816 2.6056 52 1 2.0979 -2.9049 2.1189 53 1 3.0430 -2.2731 4.3225 54 1 4.3279 -2.4533 3.1037 55 1 3.7843 -0.8299 3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324864405.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:51 Heat of formation + Delta-G solvation = -79.163900 kcal Electronic energy + Delta-G solvation = -30642.673782 eV Core-core repulsion = 26679.423292 eV Total energy + Delta-G solvation = -3963.250490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18365 -40.13275 -39.06973 -36.54716 -36.08065 -34.62134 -32.89070 -32.43321 -31.57095 -31.02511 -28.67111 -28.23784 -27.89850 -25.96742 -24.63642 -23.84622 -23.64740 -22.37085 -21.26487 -19.77633 -19.62582 -18.38825 -17.92225 -17.80960 -16.99805 -16.80079 -16.57843 -16.38605 -15.74271 -15.55036 -15.47756 -15.14649 -15.03096 -14.90465 -14.72678 -14.44915 -14.35283 -14.01653 -13.91401 -13.66216 -13.30625 -13.15360 -13.12263 -12.96140 -12.73232 -12.66995 -12.60730 -12.56770 -12.47219 -12.32816 -12.21801 -11.95844 -11.88556 -11.79230 -11.77534 -11.44983 -11.15692 -11.04027 -10.81490 -10.48216 -10.45109 -10.07217 -9.99053 -8.62579 -7.85654 -5.29159 1.19696 1.45976 1.47687 1.55837 1.73701 2.28307 2.51899 2.81243 3.27872 3.65510 3.73403 3.83048 3.88387 3.93070 3.94422 3.97037 4.16215 4.23159 4.35845 4.42894 4.45547 4.50890 4.52809 4.57534 4.63617 4.73310 4.73602 4.80894 4.83392 4.85393 4.86996 4.87717 4.94814 4.97145 5.03182 5.08173 5.08797 5.15090 5.18649 5.25253 5.29443 5.33047 5.41402 5.49056 5.52038 5.58552 5.64640 5.68455 5.82466 5.86835 6.35121 6.41725 6.62001 7.18350 7.32374 7.90942 8.41177 9.19942 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.002234 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.730148 B =12531.551984 C =13271.325631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C -0.111 4.111 4 C 0.141 3.859 5 H 0.057 0.943 6 C -0.133 4.133 7 C 0.511 3.489 8 O -0.578 6.578 9 N -0.718 5.718 10 C 0.144 3.856 11 C -0.054 4.054 12 C -0.135 4.135 13 C -0.115 4.115 14 C 0.178 3.822 15 N -0.610 5.610 16 C -0.260 4.260 17 H 0.062 0.938 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.271 1.271 24 C 0.143 3.857 25 C -0.112 4.112 26 O -0.384 6.384 27 C 0.061 3.939 28 C -0.145 4.145 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.008 0.992 45 H 0.047 0.953 46 H 0.249 0.751 47 H 0.022 0.978 48 H 0.047 0.953 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.053 0.947 52 H 0.035 0.965 53 H 0.086 0.914 54 H 0.047 0.953 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 12.808 20.640 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.083 3.917 5 H 0.075 0.925 6 C -0.172 4.172 7 C 0.299 3.701 8 O -0.457 6.457 9 N -0.371 5.371 10 C 0.020 3.980 11 C -0.054 4.054 12 C -0.192 4.192 13 C -0.154 4.154 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.391 4.391 17 H 0.079 0.921 18 C -0.245 4.245 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.196 1.196 24 C 0.017 3.983 25 C -0.152 4.152 26 O -0.304 6.304 27 C -0.015 4.015 28 C -0.202 4.202 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.248 0.752 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.026 0.974 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.040 0.960 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.069 0.931 51 H 0.072 0.928 52 H 0.054 0.946 53 H 0.105 0.895 54 H 0.067 0.933 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.152 12.368 21.126 25.802 hybrid contribution -0.418 -0.701 -1.480 1.690 sum -8.570 11.667 19.647 24.404 Atomic orbital electron populations 1.23919 0.94913 1.02909 0.99836 1.22252 0.95729 0.96217 1.01427 1.20733 1.00090 0.93476 1.02483 1.20776 0.90587 0.94184 0.86168 0.92516 1.21858 1.02072 0.94368 0.98927 1.21003 0.78282 0.89583 0.81212 1.90665 1.62526 1.54266 1.38274 1.46038 1.51478 1.17925 1.21627 1.21213 0.95626 0.84346 0.96837 1.20557 0.95454 0.96397 0.93016 1.21854 0.98069 0.97603 1.01708 1.22039 0.97358 1.00497 0.95536 1.20608 0.93127 0.86373 0.94591 1.44300 1.48304 1.20639 1.20121 1.19488 1.42418 0.89310 0.87875 0.92076 1.25703 1.02575 0.97605 0.98616 1.70167 1.52104 1.15034 1.20485 0.85346 0.78173 0.79018 0.78400 1.21387 1.22109 1.19618 1.21037 0.91854 0.98169 0.87204 1.21881 0.99497 0.95711 0.98070 1.87867 1.39265 1.83333 1.19908 1.22469 0.96971 0.96763 0.85317 1.21708 0.98672 1.02746 0.97044 0.86515 0.88427 0.92120 0.90367 0.91388 0.86364 0.85363 0.75215 0.91872 0.93185 0.91844 0.93480 0.91677 0.94042 0.91078 0.97379 0.93411 0.94165 0.95980 0.93454 0.90201 0.93051 0.92836 0.94637 0.89507 0.93331 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 13.95 67.79 0.95 -1.38 16 2 C -0.16 -2.36 5.05 -16.48 -0.08 -2.45 16 3 C -0.11 -1.40 9.69 71.24 0.69 -0.71 16 4 C 0.14 2.77 1.78 29.85 0.05 2.82 16 5 H 0.06 1.26 7.25 -2.38 -0.02 1.24 16 6 C -0.13 -2.34 5.24 29.85 0.16 -2.18 16 7 C 0.51 12.75 7.71 87.66 0.68 13.42 16 8 O -0.58 -18.99 15.42 10.76 0.17 -18.82 16 9 N -0.72 -16.57 4.95 -463.05 -2.29 -18.86 16 10 C 0.14 3.87 4.56 86.38 0.39 4.26 16 11 C -0.05 -1.58 0.53 -52.16 -0.03 -1.61 16 12 C -0.14 -3.68 7.54 71.98 0.54 -3.14 16 13 C -0.12 -4.00 4.75 30.67 0.15 -3.86 16 14 C 0.18 8.20 4.84 86.36 0.42 8.61 16 15 N -0.61 -30.02 2.99 -699.11 -2.09 -32.11 16 16 C -0.26 -14.33 9.59 84.03 0.81 -13.52 16 17 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 18 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 19 N -0.93 -54.41 11.19 21.65 0.24 -54.17 16 20 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.14 5.76 6.04 86.36 0.52 6.28 16 25 C -0.11 -3.62 4.91 30.67 0.15 -3.47 16 26 O -0.38 -8.92 9.01 -135.21 -1.22 -10.14 16 27 C 0.06 1.24 6.46 71.98 0.46 1.71 16 28 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 29 H 0.12 1.16 8.05 -2.91 -0.02 1.14 16 30 H 0.10 1.26 7.84 -2.91 -0.02 1.24 16 31 H 0.06 0.86 7.50 -2.38 -0.02 0.84 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.12 1.73 7.66 -2.39 -0.02 1.72 16 35 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 7.86 6.16 -92.71 -0.57 7.28 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.56 4.98 -2.39 -0.01 1.55 16 41 H 0.06 1.50 6.86 -2.39 -0.02 1.48 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 2.08 6.82 -2.38 -0.02 2.06 16 44 H 0.01 0.39 6.69 -2.38 -0.02 0.38 16 45 H 0.05 2.55 6.04 -2.38 -0.01 2.53 16 46 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 47 H 0.02 0.89 6.69 -2.38 -0.02 0.88 16 48 H 0.05 1.91 7.94 -2.39 -0.02 1.90 16 49 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.04 0.82 8.08 -2.39 -0.02 0.80 16 53 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 54 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.69 422.90 4.12 -64.57 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.27 Total: 21.79 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 7.01 Total: 0.73 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.14 Total: -105.14 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.05 Total: -28.96 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.69 4.12 -64.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324864405.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.597 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds