Wall clock time and date at job start Tue Mar 31 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99893 * 2 1 4 4 C 1.53002 * 109.46983 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47419 * 305.67936 * 4 3 2 6 6 O 1.21280 * 120.00435 * 119.39101 * 5 4 3 7 7 N 1.34780 * 120.00082 * 299.39284 * 5 4 3 8 8 C 1.47325 * 125.61411 * 354.18028 * 7 5 4 9 9 C 1.54320 * 107.12086 * 178.82153 * 8 7 5 10 10 C 1.55161 * 103.09951 * 338.02116 * 9 8 7 11 11 H 1.09004 * 111.00330 * 277.29992 * 10 9 8 12 12 C 1.53002 * 111.00293 * 153.49283 * 10 9 8 13 13 C 1.52993 * 109.47315 * 66.45291 * 12 10 9 14 14 N 1.46502 * 109.47339 * 180.02562 * 13 12 10 15 15 C 1.36933 * 120.00521 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99873 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00535 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99495 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47517 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47207 * 119.99923 * 19 17 15 22 22 H 1.48506 * 109.46938 * 239.99625 * 19 17 15 23 23 C 1.47425 * 125.65081 * 174.31949 * 7 5 4 24 24 C 1.52999 * 109.47316 * 65.67979 * 4 3 2 25 25 C 1.53002 * 109.47476 * 179.97438 * 24 4 3 26 26 C 1.53002 * 109.47250 * 300.00568 * 25 24 4 27 27 C 1.52999 * 109.47345 * 59.99352 * 26 25 24 28 28 C 1.53002 * 109.47316 * 300.00151 * 27 26 25 29 29 H 1.08997 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47109 * 300.00031 * 1 2 3 31 31 H 1.08998 * 109.47354 * 59.99981 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.00388 * 3 2 1 33 33 H 1.08995 * 109.47383 * 299.99891 * 3 2 1 34 34 H 1.08996 * 109.84803 * 59.50460 * 8 7 5 35 35 H 1.09008 * 110.05936 * 298.24613 * 8 7 5 36 36 H 1.09002 * 110.72103 * 219.57211 * 9 8 7 37 37 H 1.08993 * 110.72325 * 96.47285 * 9 8 7 38 38 H 1.09006 * 109.46927 * 186.45437 * 12 10 9 39 39 H 1.09007 * 109.46623 * 306.44979 * 12 10 9 40 40 H 1.09006 * 109.47243 * 299.99953 * 13 12 10 41 41 H 1.08991 * 109.47402 * 59.99905 * 13 12 10 42 42 H 0.97000 * 119.99727 * 359.97438 * 14 13 12 43 43 H 0.97004 * 119.99648 * 179.97438 * 18 17 15 44 44 H 1.08995 * 110.36828 * 85.32648 * 23 7 5 45 45 H 1.08999 * 110.45664 * 323.04535 * 23 7 5 46 46 H 1.08995 * 109.47219 * 300.00275 * 24 4 3 47 47 H 1.09005 * 109.46932 * 59.99700 * 24 4 3 48 48 H 1.08994 * 109.47499 * 180.02562 * 25 24 4 49 49 H 1.09003 * 109.46517 * 59.99913 * 25 24 4 50 50 H 1.09005 * 109.46738 * 299.99683 * 26 25 24 51 51 H 1.08995 * 109.47004 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.46897 * 180.02562 * 27 26 25 53 53 H 1.09005 * 109.46932 * 60.00451 * 27 26 25 54 54 H 1.08993 * 109.47060 * 300.00263 * 28 27 26 55 55 H 1.08994 * 109.47339 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9713 0.3187 1.1531 6 8 4.5800 -0.7091 0.9438 7 7 3.6845 0.6864 2.4177 8 6 3.0626 1.9597 2.8208 9 6 2.9033 1.9217 4.3553 10 6 2.9289 0.4034 4.6740 11 1 1.9464 -0.0440 4.5234 12 6 3.4312 0.1502 6.0969 13 6 2.4203 0.7070 7.1013 14 7 2.9015 0.4651 8.4637 15 6 2.1573 0.8785 9.5362 16 1 1.2158 1.3833 9.3778 17 6 2.6130 0.6488 10.8271 18 7 3.7603 0.0331 11.0202 19 14 1.5982 1.2135 12.2902 20 1 0.3596 1.8755 11.8077 21 1 1.2391 0.0398 13.1261 22 1 2.3893 2.1745 13.1000 23 6 3.9438 -0.1174 3.6260 24 6 3.9964 0.5524 -1.3154 25 6 5.5217 0.4321 -1.3164 26 6 6.1431 1.8230 -1.1738 27 6 5.6820 2.4553 0.1410 28 6 4.1568 2.5756 0.1419 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 2.0852 2.0598 2.3489 35 1 3.7019 2.7950 2.5350 36 1 1.9528 2.3628 4.6554 37 1 3.7344 2.4320 4.8420 38 1 3.5482 -0.9219 6.2555 39 1 4.3923 0.6452 6.2363 40 1 2.3032 1.7791 6.9427 41 1 1.4592 0.2121 6.9618 42 1 3.7469 0.0113 8.6060 43 1 4.0789 -0.1271 11.9223 44 1 4.9642 0.0407 3.9750 45 1 3.7720 -1.1747 3.4243 46 1 3.5534 -0.4383 -1.4172 47 1 3.6811 1.1788 -2.1500 48 1 5.8501 -0.0178 -2.2532 49 1 5.8372 -0.1940 -0.4818 50 1 5.8274 2.4492 -2.0083 51 1 7.2296 1.7373 -1.1740 52 1 6.1244 3.4463 0.2423 53 1 5.9977 1.8291 0.9756 54 1 3.8412 3.2017 -0.6926 55 1 3.8283 3.0256 1.0787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326285582.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:55 Heat of formation + Delta-G solvation = -100.770054 kcal Electronic energy + Delta-G solvation = -31309.091919 eV Core-core repulsion = 27344.904516 eV Total energy + Delta-G solvation = -3964.187403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12044 -39.62491 -38.59797 -37.78580 -36.84503 -34.69416 -33.33725 -32.39406 -31.59240 -30.63436 -28.82028 -28.03379 -26.11902 -25.94839 -24.79285 -23.65348 -23.11982 -22.44922 -21.55588 -21.21520 -19.78846 -19.10860 -17.75600 -17.33339 -17.25028 -16.91099 -16.75034 -16.66999 -15.94844 -15.84454 -15.45552 -15.27672 -15.21712 -14.96430 -14.80683 -14.51883 -14.42965 -14.06848 -13.93824 -13.58979 -13.32016 -13.19584 -13.03367 -12.93700 -12.89393 -12.81011 -12.76244 -12.68548 -12.31839 -12.17008 -12.12166 -11.99318 -11.93352 -11.65028 -11.60768 -11.51615 -11.48979 -11.09029 -10.92648 -10.90327 -10.59187 -10.41492 -9.56975 -8.99291 -7.95008 -5.24092 1.47890 1.49021 1.59133 1.68619 1.98862 2.56651 2.75841 3.31909 3.39174 3.50424 3.62637 3.71897 3.76660 3.83448 3.98486 4.02193 4.17430 4.18525 4.28651 4.32040 4.35536 4.42646 4.45215 4.49803 4.50864 4.53011 4.58325 4.60554 4.62883 4.69310 4.72453 4.79295 4.86250 4.86490 4.87983 4.89023 4.97865 5.02773 5.12436 5.13051 5.21000 5.23393 5.26700 5.32634 5.38029 5.38890 5.44808 5.47000 5.50673 5.60382 6.21316 6.27876 6.58786 7.22461 7.33386 8.10738 8.32478 9.29182 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.002227 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.838736 B =12572.683712 C =13177.767936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.066 4.066 5 C 0.546 3.454 6 O -0.581 6.581 7 N -0.617 5.617 8 C 0.088 3.912 9 C -0.124 4.124 10 C -0.082 4.082 11 H 0.086 0.914 12 C -0.102 4.102 13 C 0.156 3.844 14 N -0.751 5.751 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.293 1.293 23 C 0.113 3.887 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.017 0.983 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.032 0.968 54 H 0.106 0.894 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 9.712 -30.787 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.016 4.016 4 C -0.069 4.069 5 C 0.337 3.663 6 O -0.460 6.460 7 N -0.350 5.350 8 C -0.033 4.033 9 C -0.162 4.162 10 C -0.101 4.101 11 H 0.104 0.896 12 C -0.141 4.141 13 C 0.030 3.970 14 N -0.394 5.394 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.010 4.010 24 C -0.123 4.123 25 C -0.173 4.173 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.155 4.155 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.076 0.924 52 H 0.105 0.895 53 H 0.051 0.949 54 H 0.124 0.876 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.149 9.080 -30.927 32.386 hybrid contribution -0.002 -0.594 1.390 1.512 sum -3.150 8.486 -29.537 30.892 Atomic orbital electron populations 1.22870 0.79448 1.03326 1.01145 1.87936 1.21411 1.28587 1.95625 1.22898 0.90429 0.85211 1.03033 1.20914 0.95457 0.97008 0.93541 1.20537 0.77373 0.85513 0.82912 1.90599 1.42626 1.28269 1.84546 1.48589 1.61387 1.19850 1.05164 1.22801 0.99101 0.85702 0.95654 1.22760 1.04377 0.95124 0.93931 1.22128 0.98623 0.97115 0.92278 0.89611 1.21494 0.98836 1.00737 0.93007 1.20782 0.95334 0.97663 0.83269 1.42670 1.24591 1.70659 1.01455 1.19702 1.01874 1.29478 0.86378 0.90369 1.25626 0.98819 1.02426 1.00357 1.69840 1.22604 1.49197 1.20725 0.85046 0.78178 0.77073 0.79313 1.18736 1.22197 1.21966 1.22138 0.98877 0.95396 0.84590 1.21283 0.95844 1.00358 0.94791 1.21753 0.95500 0.98102 1.01933 1.21530 0.99898 0.95764 0.98018 1.21543 0.95640 1.01379 0.97328 1.21920 0.95236 0.92807 1.05491 0.89836 0.93216 0.92216 0.90758 0.89681 0.89250 0.88437 0.88337 0.90256 0.92780 0.91885 0.94969 0.96500 0.79659 0.94039 0.92047 0.92589 0.93560 0.89113 0.91955 0.92761 0.89951 0.92366 0.89490 0.94919 0.87600 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -8.43 9.73 -148.98 -1.45 -9.88 16 3 C 0.06 0.85 4.59 71.98 0.33 1.18 16 4 C -0.07 -1.14 0.34 -52.93 -0.02 -1.16 16 5 C 0.55 14.09 4.56 87.65 0.40 14.48 16 6 O -0.58 -20.29 13.99 -3.03 -0.04 -20.34 16 7 N -0.62 -14.13 3.32 -811.04 -2.69 -16.82 16 8 C 0.09 1.35 5.29 86.67 0.46 1.81 16 9 C -0.12 -2.27 5.58 31.78 0.18 -2.09 16 10 C -0.08 -1.96 3.07 -9.40 -0.03 -1.99 16 11 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 12 C -0.10 -3.17 4.84 30.59 0.15 -3.03 16 13 C 0.16 5.96 6.11 86.38 0.53 6.49 16 14 N -0.75 -38.44 5.60 -343.47 -1.92 -40.36 16 15 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 18 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 19 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 C 0.11 2.95 6.36 86.85 0.55 3.50 16 24 C -0.09 -1.58 4.27 30.59 0.13 -1.45 16 25 C -0.14 -2.73 5.63 30.60 0.17 -2.56 16 26 C -0.11 -1.69 5.92 30.59 0.18 -1.51 16 27 C -0.12 -1.75 5.70 30.59 0.17 -1.58 16 28 C -0.12 -1.32 4.52 30.60 0.14 -1.18 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.83 4.87 -2.39 -0.01 0.81 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.05 5.27 -2.39 -0.01 1.04 16 35 H 0.10 1.12 5.67 -2.38 -0.01 1.10 16 36 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 37 H 0.08 1.52 8.01 -2.39 -0.02 1.50 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 39 H 0.06 1.99 8.11 -2.38 -0.02 1.97 16 40 H 0.03 1.17 7.51 -2.38 -0.02 1.15 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.37 20.42 7.67 -92.71 -0.71 19.70 16 43 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 45 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 46 H 0.05 1.12 7.79 -2.39 -0.02 1.11 16 47 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.05 1.53 5.54 -2.39 -0.01 1.51 16 50 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.03 0.67 7.22 -2.38 -0.02 0.65 16 54 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 55 H 0.09 0.83 4.24 -2.39 -0.01 0.82 16 Total: -1.00 -75.63 407.99 2.25 -73.38 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.15 Total: 30.31 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.90 Total: -4.37 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.33 Total: -117.22 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.49 Total: -30.22 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.63 2.25 -73.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326285582.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.390 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds