Wall clock time and date at job start Tue Mar 31 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 114.00124 * 2 1 4 4 H 1.09004 * 109.46946 * 29.99637 * 3 2 1 5 5 C 1.50695 * 109.47090 * 270.00338 * 3 2 1 6 6 O 1.21282 * 120.00180 * 354.99229 * 5 3 2 7 7 N 1.34775 * 120.00103 * 174.99705 * 5 3 2 8 8 C 1.46499 * 120.00337 * 179.97438 * 7 5 3 9 9 H 1.08998 * 109.47404 * 34.99690 * 8 7 5 10 10 C 1.53002 * 109.47596 * 155.00295 * 8 7 5 11 11 C 1.52997 * 109.47369 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47404 * 300.00003 * 11 10 8 13 13 H 1.09008 * 109.46970 * 299.99951 * 12 11 10 14 14 C 1.52997 * 109.47404 * 180.02562 * 12 11 10 15 15 N 1.46505 * 109.47212 * 174.99693 * 14 12 11 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46725 * 59.99976 * 20 18 16 22 22 H 1.48498 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46920 * 300.00189 * 20 18 16 24 24 C 1.53001 * 109.47368 * 59.99530 * 12 11 10 25 25 C 1.52997 * 109.47242 * 300.00569 * 24 12 11 26 26 C 1.52991 * 109.47212 * 150.00024 * 3 2 1 27 27 C 1.54263 * 110.03584 * 57.90940 * 26 3 2 28 28 C 1.54965 * 104.16411 * 217.13756 * 27 26 3 29 29 C 1.54890 * 102.77705 * 37.88395 * 28 27 26 30 30 C 1.53879 * 110.03463 * 300.68928 * 26 3 2 31 31 H 1.09006 * 109.47254 * 299.99958 * 1 2 3 32 32 H 1.09006 * 109.47502 * 59.99767 * 1 2 3 33 33 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99977 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.46734 * 59.99319 * 10 8 7 36 36 H 1.09002 * 109.46264 * 300.00255 * 10 8 7 37 37 H 1.09000 * 109.46875 * 179.97438 * 11 10 8 38 38 H 1.09008 * 109.47017 * 59.99925 * 11 10 8 39 39 H 1.09002 * 109.47153 * 54.99686 * 14 12 11 40 40 H 1.09001 * 109.46832 * 294.99876 * 14 12 11 41 41 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 42 42 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.46731 * 60.00275 * 24 12 11 44 44 H 1.08998 * 109.47430 * 180.02562 * 24 12 11 45 45 H 1.08998 * 109.46934 * 299.99660 * 25 24 12 46 46 H 1.09000 * 109.47325 * 179.97438 * 25 24 12 47 47 H 1.08998 * 110.01562 * 179.30277 * 26 3 2 48 48 H 1.09002 * 110.48350 * 335.78718 * 27 26 3 49 49 H 1.09000 * 110.48625 * 98.42503 * 27 26 3 50 50 H 1.08998 * 110.71941 * 279.57773 * 28 27 26 51 51 H 1.08996 * 110.92711 * 156.29018 * 28 27 26 52 52 H 1.08996 * 110.48832 * 203.40610 * 29 28 27 53 53 H 1.09007 * 110.59710 * 80.81852 * 29 28 27 54 54 H 1.08994 * 110.03593 * 238.57459 * 30 26 3 55 55 H 1.09005 * 110.02923 * 359.95599 * 30 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0107 -2.3413 7 7 2.6587 3.0125 -1.6685 8 6 2.8579 3.4585 -3.0497 9 1 2.0968 3.0114 -3.6892 10 6 2.7471 4.9831 -3.1144 11 6 2.9557 5.4489 -4.5568 12 6 4.3430 5.0176 -5.0365 13 1 5.1039 5.4647 -4.3967 14 6 4.5518 5.4839 -6.4786 15 7 5.9216 5.1768 -6.8977 16 6 6.3413 5.5040 -8.1594 17 1 5.6625 5.9890 -8.8455 18 6 7.6389 5.2126 -8.5567 19 7 8.4659 4.6211 -7.7208 20 14 8.2116 5.6596 -10.2776 21 1 8.0983 7.1276 -10.4712 22 1 9.6271 5.2457 -10.4514 23 1 7.3648 4.9616 -11.2781 24 6 4.4539 3.4930 -4.9718 25 6 4.2453 3.0272 -3.5294 26 6 3.3588 1.2633 0.7212 27 6 4.2933 0.2455 0.0353 28 6 5.0701 -0.4058 1.2074 29 6 3.9916 -0.5165 2.3136 30 6 3.1673 0.7795 2.1693 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.8474 3.6152 -0.9323 35 1 3.5082 5.4301 -2.4749 36 1 1.7588 5.2903 -2.7722 37 1 2.8763 6.5350 -4.6029 38 1 2.1948 5.0018 -5.1966 39 1 4.3855 6.5594 -6.5404 40 1 3.8477 4.9692 -7.1324 41 1 6.5310 4.7409 -6.2817 42 1 9.3726 4.4171 -7.9985 43 1 3.6929 3.0459 -5.6116 44 1 5.4424 3.1857 -5.3131 45 1 5.0061 3.4743 -2.8897 46 1 4.3238 1.9410 -3.4834 47 1 3.8160 2.2528 0.7156 48 1 3.7122 -0.5049 -0.5007 49 1 4.9793 0.7537 -0.6423 50 1 5.8901 0.2356 1.5303 51 1 5.4402 -1.3925 0.9287 52 1 4.4579 -0.5645 3.2976 53 1 3.3610 -1.3902 2.1483 54 1 3.5323 1.5337 2.8664 55 1 2.1134 0.5755 2.3585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326555449.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:30 Heat of formation + Delta-G solvation = -128.032403 kcal Electronic energy + Delta-G solvation = -30613.199408 eV Core-core repulsion = 26647.829820 eV Total energy + Delta-G solvation = -3965.369587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.54051 -40.02032 -38.81663 -37.69452 -36.65783 -35.14415 -33.23847 -31.93793 -31.70869 -30.30500 -29.56148 -27.57908 -27.11818 -25.97588 -24.45268 -23.62180 -22.15438 -21.78352 -21.40081 -20.84656 -20.50601 -19.17630 -18.54371 -17.86321 -17.12328 -16.73722 -16.64351 -16.33686 -16.16142 -15.62518 -15.52804 -15.33022 -15.28460 -15.11314 -14.78576 -14.58374 -14.13512 -14.13023 -13.77554 -13.75230 -13.45897 -13.23589 -13.10024 -12.86952 -12.74805 -12.55664 -12.33183 -12.21191 -12.07890 -12.03236 -11.94561 -11.90779 -11.89735 -11.66896 -11.58134 -11.49755 -11.39785 -11.32938 -11.22238 -11.14633 -10.89749 -10.22525 -10.02976 -8.98873 -7.95429 -5.23890 1.45376 1.49029 1.55111 1.57738 2.07515 2.55583 2.79918 3.37534 3.52420 3.65404 3.70254 3.74481 3.78165 3.85820 3.97547 4.06301 4.11219 4.16555 4.32207 4.42715 4.45265 4.46197 4.52532 4.53119 4.56911 4.58982 4.61647 4.65639 4.71391 4.80008 4.82675 4.84723 4.90903 4.93873 5.01121 5.06788 5.09271 5.11012 5.12923 5.20258 5.23680 5.27622 5.30975 5.34085 5.45729 5.46542 5.51275 5.54041 5.54212 5.61241 6.05425 6.27171 6.60528 7.28419 7.33035 8.10912 8.33958 9.28117 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002166 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.308729 B =12926.562982 C =13807.996789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.083 3.917 4 H 0.118 0.882 5 C 0.487 3.513 6 O -0.576 6.576 7 N -0.709 5.709 8 C 0.152 3.848 9 H 0.063 0.937 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.082 4.082 13 H 0.068 0.932 14 C 0.153 3.847 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.101 4.101 25 C -0.115 4.115 26 C -0.082 4.082 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.120 4.120 30 C -0.108 4.108 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.012 0.988 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.075 0.925 51 H 0.057 0.943 52 H 0.076 0.924 53 H 0.056 0.944 54 H 0.086 0.914 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 -3.805 27.296 32.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.021 3.979 4 H 0.136 0.864 5 C 0.274 3.726 6 O -0.455 6.455 7 N -0.362 5.362 8 C 0.047 3.953 9 H 0.081 0.919 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.101 4.101 13 H 0.087 0.913 14 C 0.027 3.973 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.206 1.206 24 C -0.139 4.139 25 C -0.153 4.153 26 C -0.100 4.100 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.157 4.157 30 C -0.145 4.145 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.030 0.970 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.127 0.873 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.076 0.924 52 H 0.095 0.905 53 H 0.075 0.925 54 H 0.104 0.896 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.273 -4.450 26.489 31.934 hybrid contribution 0.857 -0.008 -1.270 1.532 sum -16.416 -4.458 25.219 30.419 Atomic orbital electron populations 1.22988 0.79808 1.03881 1.00441 1.87991 1.21009 1.25874 1.94238 1.22260 0.98168 0.86990 0.90471 0.86406 1.21991 0.76007 0.81699 0.92930 1.90712 1.52107 1.54827 1.47850 1.46003 1.66973 1.14241 1.09009 1.20853 0.95898 0.95817 0.82683 0.91892 1.21715 1.03939 0.91915 0.97226 1.21432 0.94812 1.01807 0.96001 1.21234 0.98718 0.94867 0.95273 0.91334 1.20889 0.85501 0.96820 0.94110 1.42607 1.10306 1.72429 1.13429 1.19626 0.95725 1.31121 0.91425 0.90808 1.25588 0.96885 1.02325 1.02173 1.69813 1.06333 1.49109 1.36878 0.85195 0.76650 0.78116 0.79715 1.20143 1.22059 1.20578 1.21362 1.00498 0.95916 0.96146 1.21779 0.97824 0.99616 0.96128 1.21988 0.91368 1.01061 0.95607 1.22346 0.97589 0.98283 0.97856 1.22488 0.98051 1.00361 0.95166 1.22304 0.96812 0.98015 0.98609 1.22097 1.00999 0.97504 0.93916 0.91214 0.95255 0.88777 0.74644 0.89604 0.89016 0.89829 0.91963 0.95869 0.96998 0.79397 0.94007 0.93361 0.94231 0.90897 0.94223 0.87267 0.93260 0.93179 0.90645 0.92403 0.90514 0.92547 0.89555 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.59 16 2 O -0.37 -7.53 8.34 -129.99 -1.08 -8.61 16 3 C 0.08 1.29 2.05 29.84 0.06 1.35 16 4 H 0.12 1.01 7.79 -2.38 -0.02 0.99 16 5 C 0.49 10.95 6.47 87.66 0.57 11.52 16 6 O -0.58 -19.40 16.17 15.95 0.26 -19.14 16 7 N -0.71 -12.20 5.04 -442.53 -2.23 -14.43 16 8 C 0.15 3.38 2.46 44.99 0.11 3.49 16 9 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 10 C -0.11 -1.85 5.39 30.59 0.16 -1.69 16 11 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 12 C -0.08 -2.60 2.22 -10.80 -0.02 -2.62 16 13 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 14 C 0.15 6.29 5.65 86.38 0.49 6.77 16 15 N -0.74 -39.30 5.33 -343.45 -1.83 -41.13 16 16 C -0.25 -14.30 9.99 84.03 0.84 -13.47 16 17 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 20 Si 0.97 47.34 29.55 68.60 2.03 49.36 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C -0.10 -3.43 5.08 30.59 0.16 -3.28 16 25 C -0.11 -3.21 5.49 30.60 0.17 -3.04 16 26 C -0.08 -1.08 2.79 -10.07 -0.03 -1.11 16 27 C -0.12 -2.42 5.65 31.69 0.18 -2.24 16 28 C -0.12 -1.94 6.91 31.91 0.22 -1.72 16 29 C -0.12 -1.52 6.83 31.67 0.22 -1.30 16 30 C -0.11 -1.08 6.22 31.32 0.19 -0.89 16 31 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 32 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 3.90 8.41 -92.71 -0.78 3.12 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.37 20.91 6.85 -92.71 -0.63 20.27 16 42 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.04 1.62 7.18 -2.39 -0.02 1.60 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.11 0.97 7.94 -2.39 -0.02 0.95 16 48 H 0.05 1.28 7.15 -2.39 -0.02 1.27 16 49 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 54 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 55 H 0.07 0.69 7.40 -2.38 -0.02 0.67 16 Total: -1.00 -77.37 424.61 2.03 -75.34 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.56 Total: 32.28 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.17 Total: -12.91 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.78 Total: -116.32 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.83 Total: -27.76 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.37 2.03 -75.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326555449.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.690 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds