Wall clock time and date at job start Tue Mar 31 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00153 * 2 1 4 4 H 1.09004 * 109.46838 * 31.69220 * 3 2 1 5 5 C 1.50694 * 109.47090 * 151.69127 * 3 2 1 6 6 O 1.21281 * 120.00271 * 18.30466 * 5 3 2 7 7 N 1.34780 * 119.99894 * 198.30685 * 5 3 2 8 8 C 1.46501 * 120.00043 * 175.03023 * 7 5 3 9 9 H 1.08995 * 109.47162 * 34.99987 * 8 7 5 10 10 C 1.53001 * 109.46913 * 154.99956 * 8 7 5 11 11 C 1.53002 * 109.46986 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47264 * 300.00378 * 11 10 8 13 13 H 1.09005 * 109.46702 * 299.99898 * 12 11 10 14 14 C 1.52995 * 109.47015 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.47000 * 174.99476 * 14 12 11 16 16 C 1.36930 * 120.00021 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00052 * 0.02562 * 16 15 14 18 18 C 1.38823 * 119.99843 * 180.02562 * 16 15 14 19 19 N 1.31612 * 119.99777 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99847 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 59.99953 * 20 18 16 22 22 H 1.48491 * 109.47156 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47314 * 300.00120 * 20 18 16 24 24 C 1.53000 * 109.47140 * 59.99426 * 12 11 10 25 25 C 1.52999 * 109.46814 * 275.00058 * 8 7 5 26 26 C 1.53000 * 109.46868 * 271.69519 * 3 2 1 27 27 C 1.54269 * 110.02741 * 291.16706 * 26 3 2 28 28 C 1.54972 * 104.15794 * 217.13855 * 27 26 3 29 29 C 1.54890 * 102.77567 * 37.89142 * 28 27 26 30 30 C 1.53878 * 110.03053 * 173.95213 * 26 3 2 31 31 H 1.09005 * 109.47354 * 304.42889 * 1 2 3 32 32 H 1.09008 * 109.47011 * 64.42558 * 1 2 3 33 33 H 1.09003 * 109.47575 * 184.42846 * 1 2 3 34 34 H 0.97001 * 119.99973 * 355.03123 * 7 5 3 35 35 H 1.08990 * 109.47148 * 299.99886 * 10 8 7 36 36 H 1.08998 * 109.47201 * 60.00574 * 10 8 7 37 37 H 1.09005 * 109.46933 * 59.99491 * 11 10 8 38 38 H 1.09000 * 109.47076 * 180.02562 * 11 10 8 39 39 H 1.08995 * 109.47100 * 294.99689 * 14 12 11 40 40 H 1.08998 * 109.47016 * 55.00017 * 14 12 11 41 41 H 0.97005 * 119.99626 * 0.02562 * 15 14 12 42 42 H 0.97003 * 119.99817 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46937 * 60.00617 * 24 12 11 44 44 H 1.08999 * 109.46625 * 180.02562 * 24 12 11 45 45 H 1.08998 * 109.47622 * 299.99623 * 25 8 7 46 46 H 1.09000 * 109.47378 * 60.00177 * 25 8 7 47 47 H 1.08990 * 110.02091 * 52.55849 * 26 3 2 48 48 H 1.08994 * 110.48735 * 335.78532 * 27 26 3 49 49 H 1.08995 * 110.48790 * 98.42939 * 27 26 3 50 50 H 1.08996 * 110.71729 * 279.57543 * 28 27 26 51 51 H 1.09000 * 110.92079 * 156.29329 * 28 27 26 52 52 H 1.09003 * 110.48407 * 203.40577 * 29 28 27 53 53 H 1.08998 * 110.60545 * 80.81704 * 29 28 27 54 54 H 1.08998 * 110.02993 * 238.56613 * 30 26 3 55 55 H 1.08998 * 110.03066 * 359.97438 * 30 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3592 1.9930 0.5399 5 6 3.3573 1.2555 0.6738 6 8 3.9272 0.1939 0.8121 7 7 3.9287 2.3907 1.1227 8 6 5.1853 2.3309 1.8735 9 1 5.8047 1.5243 1.4816 10 6 5.9287 3.6605 1.7301 11 6 7.2407 3.5984 2.5147 12 6 6.9396 3.3391 3.9923 13 1 6.3200 4.1459 4.3838 14 6 8.2517 3.2763 4.7767 15 7 7.9600 3.1477 6.2066 16 6 8.9858 3.0722 7.1105 17 1 10.0099 3.1080 6.7694 18 6 8.7094 2.9498 8.4655 19 7 7.4614 2.9067 8.8812 20 14 10.1088 2.8476 9.6986 21 1 10.9365 4.0774 9.6110 22 1 9.5523 2.7215 11.0695 23 1 10.9502 1.6620 9.3955 24 6 6.1961 2.0096 4.1356 25 6 4.8846 2.0714 3.3510 26 6 2.1787 1.7887 -1.4419 27 6 3.2656 0.9573 -2.1541 28 6 3.9966 1.9831 -3.0569 29 6 4.0266 3.2557 -2.1746 30 6 2.6619 3.2495 -1.4552 31 1 -0.3634 0.5810 0.8477 32 1 -0.3633 0.4437 -0.9271 33 1 -0.3634 -1.0246 0.0794 34 1 3.5079 3.2472 0.9486 35 1 6.1428 3.8454 0.6775 36 1 5.3093 4.4672 2.1221 37 1 7.8603 2.7915 2.1232 38 1 7.7701 4.5457 2.4129 39 1 8.8322 2.4154 4.4454 40 1 8.8227 4.1883 4.6031 41 1 7.0402 3.1152 6.5130 42 1 7.2683 2.8208 9.8279 43 1 6.8158 1.2027 3.7441 44 1 5.9813 1.8251 5.1881 45 1 4.2652 2.8781 3.7430 46 1 4.3550 1.1242 3.4531 47 1 1.2330 1.7034 -1.9769 48 1 3.9558 0.5291 -1.4273 49 1 2.8108 0.1723 -2.7582 50 1 3.4331 2.1611 -3.9728 51 1 5.0082 1.6483 -3.2864 52 1 4.1272 4.1470 -2.7940 53 1 4.8397 3.2016 -1.4508 54 1 1.9510 3.8730 -1.9974 55 1 2.7760 3.6143 -0.4344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326555450.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:34 Heat of formation + Delta-G solvation = -120.164126 kcal Electronic energy + Delta-G solvation = -30939.054685 eV Core-core repulsion = 26974.026292 eV Total energy + Delta-G solvation = -3965.028393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73589 -39.98474 -38.67600 -37.95050 -36.68736 -35.14649 -33.20034 -31.84143 -31.69367 -30.32227 -29.56204 -27.95918 -26.95581 -25.77744 -24.47861 -23.61141 -22.31730 -21.79877 -21.37611 -21.09102 -20.41184 -19.15746 -18.33885 -17.97487 -17.15683 -16.81839 -16.66938 -16.35943 -16.01926 -15.66140 -15.55278 -15.33306 -15.26890 -15.21941 -14.86718 -14.59138 -14.29048 -13.93234 -13.82184 -13.71446 -13.44450 -13.21873 -13.08339 -12.86069 -12.74053 -12.68900 -12.24336 -12.19971 -12.06425 -12.03593 -11.94982 -11.92270 -11.89940 -11.85983 -11.71790 -11.45018 -11.39308 -11.22740 -11.14486 -10.92392 -10.87144 -10.39176 -10.01186 -8.98156 -7.95004 -5.23149 1.45853 1.49452 1.55490 1.56585 1.89555 2.56106 2.95741 3.38067 3.52349 3.58833 3.69240 3.72958 3.76728 3.86334 3.95132 4.02365 4.09697 4.16848 4.31018 4.43622 4.46305 4.46762 4.50529 4.53144 4.54646 4.57640 4.59553 4.64151 4.70640 4.78663 4.82372 4.84610 4.87254 4.94076 5.00436 5.07861 5.08096 5.09817 5.13138 5.20773 5.24384 5.25881 5.30502 5.33159 5.39085 5.46457 5.50189 5.51829 5.55020 5.62172 6.06037 6.27743 6.58846 7.26219 7.33662 8.11675 8.34763 9.28596 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.002191 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.015403 B =12774.989276 C =13637.923572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.077 3.923 4 H 0.109 0.891 5 C 0.518 3.482 6 O -0.571 6.571 7 N -0.707 5.707 8 C 0.152 3.848 9 H 0.064 0.936 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.082 4.082 13 H 0.069 0.931 14 C 0.153 3.847 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.103 4.103 27 C -0.126 4.126 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.119 4.119 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.413 0.587 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.012 0.988 40 H 0.023 0.977 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.048 0.952 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.102 0.898 48 H 0.044 0.956 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.056 0.944 52 H 0.082 0.918 53 H 0.058 0.942 54 H 0.094 0.906 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 4.298 -28.408 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.312 6.312 3 C 0.016 3.984 4 H 0.127 0.873 5 C 0.304 3.696 6 O -0.449 6.449 7 N -0.363 5.363 8 C 0.048 3.952 9 H 0.083 0.917 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.101 4.101 13 H 0.087 0.913 14 C 0.027 3.973 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.206 1.206 24 C -0.139 4.139 25 C -0.156 4.156 26 C -0.122 4.122 27 C -0.164 4.164 28 C -0.161 4.161 29 C -0.163 4.163 30 C -0.156 4.156 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.253 0.747 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.120 0.880 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.075 0.925 52 H 0.101 0.899 53 H 0.077 0.923 54 H 0.113 0.887 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.686 3.376 -28.257 32.494 hybrid contribution 0.134 -0.265 1.415 1.445 sum -15.552 3.111 -26.842 31.177 Atomic orbital electron populations 1.23095 0.78788 1.04007 1.01552 1.88022 1.21739 1.26338 1.95107 1.22317 0.92103 0.86760 0.97208 0.87317 1.20812 0.87604 0.83805 0.77339 1.90711 1.65014 1.31555 1.57655 1.46169 1.25273 1.09049 1.55760 1.20869 0.84869 0.99498 0.89995 0.91736 1.21717 0.96072 0.95306 1.01697 1.21432 0.97458 1.02820 0.92297 1.21239 0.95488 0.97136 0.96242 0.91255 1.20885 0.95915 0.97205 0.83302 1.42605 1.05637 1.88607 1.01903 1.19626 0.89046 1.40772 0.88417 0.90832 1.25583 0.98695 1.03747 0.98938 1.69811 1.18722 1.59201 1.14393 0.85198 0.78452 0.78201 0.77845 1.20152 1.22063 1.20606 1.21354 0.96069 0.97459 0.99044 1.21802 0.97178 1.01203 0.95386 1.22242 1.00873 0.96115 0.92927 1.22452 0.97331 0.97990 0.98583 1.22510 0.99996 0.95175 0.98392 1.22378 0.97139 0.98059 0.98679 1.22318 0.97713 0.94094 1.01502 0.92684 0.91828 0.88937 0.74657 0.89083 0.89580 0.91983 0.89807 0.97001 0.95885 0.79376 0.94015 0.93319 0.94099 0.90728 0.94078 0.87980 0.93677 0.92113 0.90238 0.92476 0.89916 0.92304 0.88703 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.39 -8.61 9.82 -130.61 -1.28 -9.89 16 3 C 0.08 1.31 2.20 29.85 0.07 1.37 16 4 H 0.11 1.18 7.74 -2.38 -0.02 1.16 16 5 C 0.52 12.31 5.49 87.65 0.48 12.79 16 6 O -0.57 -20.01 15.26 15.33 0.23 -19.77 16 7 N -0.71 -12.72 4.72 -442.54 -2.09 -14.81 16 8 C 0.15 3.42 2.50 44.99 0.11 3.53 16 9 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 10 C -0.11 -1.88 5.39 30.60 0.16 -1.71 16 11 C -0.10 -2.30 5.20 30.60 0.16 -2.14 16 12 C -0.08 -2.59 2.23 -10.79 -0.02 -2.61 16 13 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 14 C 0.15 6.27 5.65 86.38 0.49 6.76 16 15 N -0.74 -39.16 5.33 -343.46 -1.83 -40.99 16 16 C -0.25 -14.26 9.99 84.04 0.84 -13.42 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.58 5.50 84.87 0.47 -4.12 16 19 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 20 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 C -0.10 -3.41 5.07 30.58 0.16 -3.25 16 25 C -0.12 -3.25 5.49 30.58 0.17 -3.08 16 26 C -0.10 -1.27 2.91 -10.07 -0.03 -1.30 16 27 C -0.13 -2.22 6.06 31.70 0.19 -2.03 16 28 C -0.12 -1.61 6.91 31.91 0.22 -1.39 16 29 C -0.13 -1.26 6.83 31.67 0.22 -1.05 16 30 C -0.12 -0.91 5.95 31.32 0.19 -0.72 16 31 H 0.05 0.55 7.98 -2.38 -0.02 0.53 16 32 H 0.06 0.51 7.73 -2.38 -0.02 0.49 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.41 4.47 6.01 -92.71 -0.56 3.91 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.37 20.82 6.85 -92.70 -0.63 20.18 16 42 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.04 1.66 7.18 -2.39 -0.02 1.64 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.10 0.94 7.71 -2.39 -0.02 0.92 16 48 H 0.04 1.14 5.67 -2.39 -0.01 1.12 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 55 H 0.07 0.42 4.82 -2.39 -0.01 0.41 16 Total: -1.00 -77.87 417.05 2.11 -75.76 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.33 Total: 31.86 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.09 Total: -10.86 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.63 Total: -116.40 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.05 Total: -29.67 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -77.87 2.11 -75.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326555450.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.401 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds