Wall clock time and date at job start Tue Mar 31 2020 21:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47094 * 2 1 4 4 C 1.42894 * 113.99912 * 184.43622 * 3 2 1 5 5 H 1.08996 * 109.47340 * 20.16981 * 4 3 2 6 6 C 1.53001 * 109.47383 * 140.17178 * 4 3 2 7 7 C 1.50705 * 109.47026 * 295.00253 * 6 4 3 8 8 O 1.21279 * 119.99532 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99907 * 179.97438 * 7 6 4 10 10 C 1.47660 * 134.45501 * 179.97438 * 9 7 6 11 11 C 1.53512 * 85.97698 * 204.29384 * 10 9 7 12 12 C 1.47663 * 134.45405 * 359.96909 * 9 7 6 13 13 C 1.52673 * 113.57313 * 91.01560 * 11 10 9 14 14 C 1.53335 * 109.11060 * 73.81327 * 13 11 10 15 15 N 1.46881 * 108.76287 * 52.40716 * 14 13 11 16 16 C 1.36933 * 120.47057 * 124.47165 * 15 14 13 17 17 H 1.08004 * 119.99608 * 328.07734 * 16 15 14 18 18 C 1.38809 * 120.00660 * 147.79778 * 16 15 14 19 19 N 1.31618 * 119.99835 * 348.43026 * 18 16 15 20 20 Si 1.86801 * 120.00360 * 168.42022 * 18 16 15 21 21 H 1.48497 * 109.46923 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46833 * 120.00542 * 20 18 16 23 23 H 1.48500 * 109.47180 * 240.00468 * 20 18 16 24 24 C 1.46884 * 119.06807 * 304.74320 * 15 14 13 25 25 C 1.52667 * 113.56237 * 222.23325 * 11 10 9 26 26 C 1.53001 * 109.47284 * 260.17138 * 4 3 2 27 27 C 1.53005 * 109.46982 * 61.54042 * 26 4 3 28 28 C 1.52999 * 109.47418 * 181.53860 * 26 4 3 29 29 H 1.09000 * 109.46764 * 60.00103 * 1 2 3 30 30 H 1.08994 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47228 * 300.00003 * 1 2 3 32 32 H 1.08993 * 109.46898 * 239.99801 * 2 1 3 33 33 H 1.09000 * 109.46764 * 119.99897 * 2 1 3 34 34 H 1.08998 * 109.47503 * 175.00138 * 6 4 3 35 35 H 1.09004 * 109.46719 * 54.99569 * 6 4 3 36 36 H 1.08997 * 113.79043 * 90.02991 * 10 9 7 37 37 H 1.09004 * 113.79179 * 318.56213 * 10 9 7 38 38 H 1.09003 * 113.79436 * 41.43547 * 12 9 7 39 39 H 1.09001 * 113.79202 * 269.96646 * 12 9 7 40 40 H 1.09000 * 109.53137 * 313.92434 * 13 11 10 41 41 H 1.08996 * 109.53168 * 193.70137 * 13 11 10 42 42 H 1.08995 * 109.59063 * 292.62378 * 14 13 11 43 43 H 1.09004 * 109.58965 * 172.18719 * 14 13 11 44 44 H 0.97004 * 120.00271 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.59364 * 175.04196 * 24 15 14 46 46 H 1.09004 * 109.59013 * 295.48005 * 24 15 14 47 47 H 1.09001 * 109.53216 * 46.07762 * 25 11 10 48 48 H 1.09003 * 109.52991 * 166.29976 * 25 11 10 49 49 H 1.08998 * 109.47155 * 301.54269 * 26 4 3 50 50 H 1.08999 * 109.47447 * 57.98210 * 27 26 4 51 51 H 1.08998 * 109.46950 * 177.98565 * 27 26 4 52 52 H 1.09007 * 109.46655 * 297.98193 * 27 26 4 53 53 H 1.08999 * 109.46882 * 59.99772 * 28 26 4 54 54 H 1.09002 * 109.47238 * 180.02562 * 28 26 4 55 55 H 1.09007 * 109.47208 * 300.00007 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4272 1.4614 -0.1010 5 1 3.8377 0.5384 -0.5103 6 6 3.7808 2.6298 -1.0233 7 6 3.3046 2.3284 -2.4210 8 8 2.7387 1.2818 -2.6563 9 7 3.5078 3.2218 -3.4095 10 6 3.1878 3.2603 -4.8505 11 6 4.3567 4.2479 -4.9733 12 6 4.1394 4.5544 -3.4853 13 6 5.6951 3.5760 -5.2699 14 6 5.7111 3.1121 -6.7313 15 7 5.3525 4.2475 -7.5913 16 6 6.1848 4.6408 -8.6050 17 1 7.2537 4.5259 -8.5013 18 6 5.6546 5.1817 -9.7682 19 7 4.3604 5.1100 -9.9969 20 14 6.7776 6.0117 -11.0089 21 1 8.1789 5.9603 -10.5201 22 1 6.6822 5.3065 -12.3123 23 1 6.3646 7.4277 -11.1808 24 6 4.0914 4.9591 -7.3448 25 6 4.0618 5.4314 -5.8914 26 6 4.0188 1.7109 1.2878 27 6 3.6980 0.5246 2.1994 28 6 5.5361 1.8712 1.1745 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.8613 2.7730 -1.0305 35 1 3.2964 3.5371 -0.6622 36 1 2.2156 3.6998 -5.0734 37 1 3.3563 2.3136 -5.3638 38 1 5.0639 4.6360 -2.9137 39 1 3.4501 5.3788 -3.3023 40 1 5.8245 2.7157 -4.6131 41 1 6.5045 4.2871 -5.1045 42 1 4.9880 2.3080 -6.8673 43 1 6.7085 2.7574 -6.9913 44 1 3.9897 5.4884 -10.8096 45 1 4.0220 5.8207 -8.0089 46 1 3.2517 4.2877 -7.5249 47 1 3.0771 5.8369 -5.6585 48 1 4.8183 6.2026 -5.7462 49 1 3.5878 2.6193 1.7085 50 1 4.0981 -0.3894 1.7606 51 1 4.1499 0.6859 3.1781 52 1 2.6174 0.4324 2.3088 53 1 5.7647 2.7163 0.5251 54 1 5.9577 2.0485 2.1640 55 1 5.9672 0.9627 0.7538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326585441.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:39 Heat of formation + Delta-G solvation = -60.928965 kcal Electronic energy + Delta-G solvation = -31055.119672 eV Core-core repulsion = 27092.659908 eV Total energy + Delta-G solvation = -3962.459764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84135 -40.33089 -38.90350 -37.41928 -36.05540 -34.24388 -32.70453 -32.17707 -31.52978 -30.90822 -28.48018 -27.86147 -27.33943 -25.95502 -24.63101 -23.91571 -23.61915 -22.49537 -21.00250 -20.19309 -19.48428 -18.40757 -18.03196 -17.81551 -17.04979 -16.79277 -16.72510 -16.61980 -15.64304 -15.47722 -15.27734 -15.19621 -15.06187 -14.82970 -14.68508 -14.33922 -13.94520 -13.85923 -13.71303 -13.46942 -13.28469 -13.05061 -13.03006 -12.96185 -12.95051 -12.86899 -12.84261 -12.61634 -12.59033 -12.24636 -12.15462 -11.97785 -11.90045 -11.81871 -11.59332 -11.48677 -11.30803 -11.28278 -11.20116 -10.64092 -10.48293 -10.26407 -9.63998 -8.57561 -7.84157 -5.35878 1.47328 1.49205 1.59410 1.68178 1.88980 2.52390 2.77756 3.28187 3.37254 3.48366 3.72508 3.75515 3.87527 3.97695 4.05072 4.13660 4.19152 4.24729 4.28187 4.35172 4.43924 4.48329 4.49766 4.53386 4.53501 4.62751 4.63337 4.70311 4.74814 4.79218 4.81882 4.86184 4.90422 4.94387 4.95359 5.00955 5.04504 5.05547 5.07428 5.16972 5.21536 5.21877 5.27142 5.38505 5.38951 5.41855 5.45777 5.56956 5.68187 5.83529 6.36772 6.45058 6.81089 7.19763 7.20142 7.89411 8.41926 9.21083 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002279 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.861521 B =12280.960452 C =12857.161699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 O -0.392 6.392 4 C 0.109 3.891 5 H 0.051 0.949 6 C -0.132 4.132 7 C 0.527 3.473 8 O -0.586 6.586 9 N -0.642 5.642 10 C 0.112 3.888 11 C -0.075 4.075 12 C 0.121 3.879 13 C -0.092 4.092 14 C 0.143 3.857 15 N -0.608 5.608 16 C -0.260 4.260 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.288 1.288 24 C 0.178 3.822 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.149 4.149 28 C -0.150 4.150 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.001 0.999 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.054 0.946 46 H -0.009 1.009 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.050 0.950 51 H 0.070 0.930 52 H 0.054 0.946 53 H 0.069 0.931 54 H 0.071 0.929 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -3.396 26.547 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.311 6.311 4 C 0.051 3.949 5 H 0.069 0.931 6 C -0.171 4.171 7 C 0.318 3.682 8 O -0.467 6.467 9 N -0.377 5.377 10 C -0.011 4.011 11 C -0.076 4.076 12 C -0.001 4.001 13 C -0.131 4.131 14 C 0.017 3.983 15 N -0.331 5.331 16 C -0.390 4.390 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.223 1.223 23 H -0.215 1.215 24 C 0.052 3.948 25 C -0.151 4.151 26 C -0.126 4.126 27 C -0.206 4.206 28 C -0.207 4.207 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.009 0.991 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.073 0.927 53 H 0.087 0.913 54 H 0.090 0.910 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.974 -3.897 26.475 26.778 hybrid contribution 0.114 -0.158 -1.661 1.673 sum -0.860 -4.055 24.813 25.157 Atomic orbital electron populations 1.21719 0.93528 1.02922 1.02152 1.22596 0.95845 0.83592 0.99717 1.87809 1.21616 1.27218 1.94494 1.21924 0.81478 0.96996 0.94499 0.93113 1.21997 1.04591 1.01396 0.89136 1.20965 0.77921 0.82510 0.86777 1.90652 1.44792 1.27301 1.83960 1.50198 1.58826 1.19608 1.09035 1.23153 0.98798 0.99005 0.80162 1.21885 0.94899 0.95505 0.95326 1.23502 0.98649 0.83858 0.94060 1.21554 0.95527 0.99736 0.96247 1.20995 0.97518 0.89024 0.90742 1.44225 1.21963 1.32417 1.34509 1.19520 0.89523 1.36305 0.93664 0.91791 1.25920 0.97198 1.02768 0.98611 1.70158 1.12370 1.49126 1.26541 0.85210 0.79014 0.77638 0.78604 1.18960 1.22288 1.21513 1.20480 0.85919 0.95149 0.93245 1.21833 1.01444 0.96422 0.95395 1.21543 0.96900 1.00198 0.93989 1.21903 1.01578 0.97369 0.99767 1.21927 0.93424 1.02289 1.03042 0.93954 0.89657 0.91340 0.95183 0.91750 0.85141 0.86829 0.89967 0.92971 0.87296 0.87512 0.91662 0.90746 0.98074 0.93022 0.94178 0.92805 0.99116 0.90604 0.91450 0.89957 0.93075 0.91126 0.92738 0.91260 0.91041 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.06 1.31 5.93 71.98 0.43 1.74 16 3 O -0.39 -9.68 8.93 -135.20 -1.21 -10.88 16 4 C 0.11 2.21 1.41 30.60 0.04 2.25 16 5 H 0.05 1.19 7.44 -2.39 -0.02 1.17 16 6 C -0.13 -2.51 4.91 29.85 0.15 -2.36 16 7 C 0.53 15.03 7.94 87.66 0.70 15.72 16 8 O -0.59 -21.89 15.78 10.75 0.17 -21.72 16 9 N -0.64 -17.18 3.44 -842.60 -2.90 -20.08 16 10 C 0.11 3.51 7.62 86.32 0.66 4.17 16 11 C -0.08 -2.15 0.77 -52.04 -0.04 -2.19 16 12 C 0.12 2.43 7.74 86.31 0.67 3.10 16 13 C -0.09 -2.85 5.21 30.60 0.16 -2.69 16 14 C 0.14 5.89 6.38 86.42 0.55 6.44 16 15 N -0.61 -29.82 2.95 -699.69 -2.07 -31.88 16 16 C -0.26 -14.05 9.54 84.03 0.80 -13.24 16 17 H 0.06 3.38 7.86 -2.91 -0.02 3.36 16 18 C -0.05 -2.74 5.02 84.86 0.43 -2.32 16 19 N -0.94 -55.09 11.14 21.65 0.24 -54.85 16 20 Si 0.97 44.38 29.57 68.60 2.03 46.41 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 C 0.18 8.21 5.15 86.26 0.44 8.65 16 25 C -0.11 -3.66 5.24 30.44 0.16 -3.50 16 26 C -0.11 -1.51 2.73 -10.79 -0.03 -1.54 16 27 C -0.15 -1.96 8.08 71.98 0.58 -1.38 16 28 C -0.15 -1.60 8.81 71.98 0.63 -0.96 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 0.81 7.75 -2.39 -0.02 0.79 16 33 H 0.06 1.15 5.82 -2.39 -0.01 1.14 16 34 H 0.13 1.77 6.13 -2.39 -0.01 1.76 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 37 H 0.05 1.92 7.41 -2.38 -0.02 1.90 16 38 H 0.11 1.60 8.09 -2.39 -0.02 1.58 16 39 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 40 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.00 0.06 7.49 -2.39 -0.02 0.04 16 43 H 0.05 2.11 7.92 -2.38 -0.02 2.09 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.05 2.85 6.10 -2.39 -0.01 2.84 16 46 H -0.01 -0.47 8.08 -2.38 -0.02 -0.49 16 47 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.05 0.79 6.28 -2.38 -0.01 0.78 16 53 H 0.07 0.62 6.29 -2.39 -0.02 0.61 16 54 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 55 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -71.17 418.72 4.17 -67.01 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.83 Total: 16.22 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 7.07 Total: 9.78 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -4.73 Total: -106.81 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.04 Total: -32.60 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.17 4.17 -67.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326585441.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.078 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds