Wall clock time and date at job start Tue Mar 31 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47205 * 2 1 4 4 C 1.42903 * 113.99630 * 184.52804 * 3 2 1 5 5 H 1.09001 * 109.47090 * 325.33810 * 4 3 2 6 6 C 1.53001 * 109.46814 * 205.33670 * 4 3 2 7 7 C 1.50702 * 109.47202 * 65.00060 * 6 4 3 8 8 O 1.21275 * 119.99852 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00000 * 180.02562 * 7 6 4 10 10 C 1.47177 * 135.99716 * 359.63026 * 9 7 6 11 11 C 1.52651 * 87.96634 * 206.72058 * 10 9 7 12 12 C 1.47156 * 136.00225 * 180.02562 * 9 7 6 13 13 C 1.52554 * 113.89155 * 88.17730 * 11 10 9 14 14 C 1.53358 * 109.12357 * 190.30290 * 13 11 10 15 15 N 1.46880 * 108.75419 * 307.75584 * 14 13 11 16 16 C 1.36935 * 120.46626 * 235.61369 * 15 14 13 17 17 H 1.07998 * 120.00347 * 28.59666 * 16 15 14 18 18 C 1.38812 * 119.99894 * 208.61381 * 16 15 14 19 19 N 1.31618 * 120.00122 * 16.51466 * 18 16 15 20 20 Si 1.86804 * 119.99985 * 196.52211 * 18 16 15 21 21 H 1.48507 * 109.47032 * 89.99592 * 20 18 16 22 22 H 1.48494 * 109.47264 * 209.99468 * 20 18 16 23 23 H 1.48496 * 109.46788 * 329.99969 * 20 18 16 24 24 C 1.46895 * 119.07331 * 55.62647 * 15 14 13 25 25 C 1.52554 * 114.25844 * 220.76637 * 11 10 9 26 26 C 1.52997 * 109.47084 * 85.33848 * 4 3 2 27 27 C 1.52998 * 109.47254 * 63.19438 * 26 4 3 28 28 C 1.52998 * 109.47319 * 183.19785 * 26 4 3 29 29 H 1.08995 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47280 * 300.00208 * 1 2 3 31 31 H 1.09002 * 109.46834 * 60.00008 * 1 2 3 32 32 H 1.09006 * 109.46838 * 239.99618 * 2 1 3 33 33 H 1.09002 * 109.46834 * 119.99992 * 2 1 3 34 34 H 1.09002 * 109.46991 * 185.00677 * 6 4 3 35 35 H 1.09001 * 109.46897 * 304.99870 * 6 4 3 36 36 H 1.08997 * 113.49011 * 321.41560 * 10 9 7 37 37 H 1.09007 * 113.48460 * 91.92428 * 10 9 7 38 38 H 1.08996 * 113.48818 * 268.08205 * 12 9 7 39 39 H 1.09003 * 113.48960 * 38.58832 * 12 9 7 40 40 H 1.08997 * 109.52657 * 310.19714 * 13 11 10 41 41 H 1.08995 * 109.52932 * 70.41108 * 13 11 10 42 42 H 1.09002 * 109.58600 * 187.97912 * 14 13 11 43 43 H 1.08994 * 109.59141 * 67.54311 * 14 13 11 44 44 H 0.97005 * 120.00090 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.59243 * 184.59155 * 24 15 14 46 46 H 1.08996 * 109.59158 * 64.14203 * 24 15 14 47 47 H 1.09006 * 109.52845 * 289.75212 * 25 11 10 48 48 H 1.08998 * 109.53130 * 49.96290 * 25 11 10 49 49 H 1.09010 * 109.47135 * 303.19758 * 26 4 3 50 50 H 1.08997 * 109.46982 * 60.00268 * 27 26 4 51 51 H 1.09003 * 109.47284 * 180.02562 * 27 26 4 52 52 H 1.09000 * 109.47210 * 300.00084 * 27 26 4 53 53 H 1.09003 * 109.46958 * 55.28607 * 28 26 4 54 54 H 1.08998 * 109.47642 * 175.28669 * 28 26 4 55 55 H 1.08998 * 109.47099 * 295.28740 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4272 1.4614 -0.1031 5 1 3.8975 0.6327 0.4262 6 6 3.8788 2.7850 0.5174 7 6 3.5860 2.7726 1.9957 8 8 3.0676 1.8007 2.5030 9 7 3.9002 3.8417 2.7538 10 6 4.5200 5.1567 2.5245 11 6 4.9787 5.1338 3.9803 12 6 3.7805 4.2034 4.1752 13 6 6.3306 4.4593 4.1916 14 6 6.5658 4.2651 5.6945 15 7 6.3686 5.5526 6.3735 16 6 7.3576 6.0819 7.1590 17 1 8.3927 5.8557 6.9497 18 6 7.0297 6.9089 8.2245 19 7 5.7970 6.9311 8.6853 20 14 8.3379 7.9907 9.0043 21 1 8.3680 9.3058 8.3151 22 1 8.0218 8.1920 10.4411 23 1 9.6637 7.3343 8.8762 24 6 5.0956 6.2643 6.1985 25 6 4.8498 6.4731 4.6993 26 6 3.8363 1.4231 -1.5768 27 6 3.2407 2.6309 -2.3030 28 6 5.3619 1.4649 -1.6839 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.9497 2.9133 0.3601 35 1 3.3414 3.6086 0.0474 36 1 5.3434 5.1305 1.8108 37 1 3.7988 5.9451 2.3086 38 1 2.8561 4.7296 4.4132 39 1 3.9807 3.3736 4.8530 40 1 6.3358 3.4897 3.6937 41 1 7.1196 5.0870 3.7774 42 1 7.5844 3.9155 5.8628 43 1 5.8572 3.5342 6.0839 44 1 5.5679 7.5088 9.4302 45 1 5.1457 7.2313 6.6989 46 1 4.2846 5.6723 6.6228 47 1 5.5869 7.1717 4.3031 48 1 3.8477 6.8737 4.5466 49 1 3.4650 0.5054 -2.0333 50 1 3.6119 3.5485 -1.8466 51 1 3.5318 2.6034 -3.3531 52 1 2.1538 2.6011 -2.2268 53 1 5.7897 0.6522 -1.0969 54 1 5.6562 1.3535 -2.7274 55 1 5.7268 2.4190 -1.3035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326585443.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:44 Heat of formation + Delta-G solvation = -56.801114 kcal Electronic energy + Delta-G solvation = -31078.577442 eV Core-core repulsion = 27116.296675 eV Total energy + Delta-G solvation = -3962.280767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97777 -40.37642 -38.91767 -37.49857 -36.24613 -34.25638 -32.50294 -32.14875 -31.50252 -30.76735 -28.44586 -27.99159 -27.19806 -25.98074 -24.98387 -23.95118 -23.71983 -22.57875 -20.74917 -20.08986 -19.47254 -18.43610 -17.97117 -17.83235 -17.14674 -16.82537 -16.70058 -16.44217 -15.68511 -15.51437 -15.42739 -15.17771 -14.91134 -14.84318 -14.76859 -14.34942 -14.03854 -13.96900 -13.70956 -13.69202 -13.31104 -13.08922 -13.05867 -12.99735 -12.90804 -12.78787 -12.68004 -12.56461 -12.44737 -12.23696 -12.10387 -12.00267 -11.87274 -11.79776 -11.74373 -11.39950 -11.32901 -11.25810 -11.13893 -10.68995 -10.47387 -10.30788 -9.66403 -8.63142 -7.84055 -5.30819 1.49249 1.50048 1.58920 1.66856 1.88984 2.53553 2.76743 3.25578 3.36712 3.48271 3.70577 3.73083 3.86136 3.96956 4.06040 4.12416 4.15780 4.27499 4.28538 4.32860 4.42496 4.46958 4.48657 4.51483 4.52540 4.62414 4.62690 4.67301 4.74124 4.81777 4.84196 4.85944 4.89803 4.93642 4.94555 5.04317 5.04810 5.06691 5.10840 5.16178 5.22008 5.22932 5.25047 5.37860 5.38671 5.46339 5.48685 5.56917 5.68317 5.83469 6.35343 6.43226 6.83191 7.18566 7.18852 7.90039 8.41072 9.21304 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.002300 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.280465 B =12170.398095 C =12672.592236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 O -0.391 6.391 4 C 0.110 3.890 5 H 0.047 0.953 6 C -0.124 4.124 7 C 0.533 3.467 8 O -0.586 6.586 9 N -0.645 5.645 10 C 0.119 3.881 11 C -0.077 4.077 12 C 0.108 3.892 13 C -0.090 4.090 14 C 0.143 3.857 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.270 1.270 24 C 0.175 3.825 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.149 4.149 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.000 1.000 44 H 0.249 0.751 45 H 0.057 0.943 46 H -0.009 1.009 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.048 0.952 53 H 0.052 0.948 54 H 0.070 0.930 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -7.522 -25.661 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.311 6.311 4 C 0.051 3.949 5 H 0.066 0.934 6 C -0.163 4.163 7 C 0.325 3.675 8 O -0.467 6.467 9 N -0.380 5.380 10 C -0.003 4.003 11 C -0.078 4.078 12 C -0.015 4.015 13 C -0.129 4.129 14 C 0.017 3.983 15 N -0.331 5.331 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.195 1.195 24 C 0.049 3.951 25 C -0.147 4.147 26 C -0.131 4.131 27 C -0.199 4.199 28 C -0.206 4.206 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.009 0.991 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.067 0.933 53 H 0.071 0.929 54 H 0.089 0.911 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.068 -8.003 -25.398 27.107 hybrid contribution 0.365 0.058 1.510 1.554 sum -4.703 -7.946 -23.888 25.610 Atomic orbital electron populations 1.21716 0.93148 1.03071 1.02296 1.22484 0.96086 0.83603 0.99609 1.87863 1.21484 1.27095 1.94649 1.21877 0.81633 0.96165 0.95202 0.93440 1.21887 1.05097 1.00354 0.88957 1.20860 0.76574 0.80586 0.89474 1.90668 1.45458 1.35130 1.75395 1.49791 1.61312 1.16288 1.10600 1.23200 0.97434 0.83126 0.96494 1.21531 0.94382 0.95688 0.96237 1.22995 0.98796 0.96800 0.82952 1.21498 0.95298 0.99604 0.96481 1.20986 0.98067 0.87075 0.92142 1.44293 1.15089 1.19121 1.54584 1.19522 0.88273 1.25195 1.05982 0.91645 1.25798 0.98342 1.03459 0.97046 1.70184 1.19896 1.41123 1.27013 0.85280 0.79188 0.79269 0.76781 1.20864 1.22550 1.19486 1.20633 0.85458 0.96390 0.92577 1.21830 1.01594 0.95067 0.96244 1.21578 0.97217 1.00303 0.94008 1.21788 1.00655 0.97228 1.00236 1.21894 0.93364 1.02548 1.02823 0.89430 0.93709 0.91418 0.92099 0.95158 0.85157 0.86528 0.87714 0.87480 0.89692 0.93532 0.91805 0.90656 0.93004 0.98155 0.94172 0.92437 0.99091 0.91332 0.90435 0.90897 0.91747 0.91681 0.93276 0.92889 0.91102 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.06 1.24 6.45 71.98 0.46 1.70 16 3 O -0.39 -9.61 8.70 -135.21 -1.18 -10.79 16 4 C 0.11 2.22 1.43 30.59 0.04 2.26 16 5 H 0.05 1.12 7.70 -2.39 -0.02 1.10 16 6 C -0.12 -2.37 4.47 29.85 0.13 -2.23 16 7 C 0.53 15.41 7.96 87.66 0.70 16.11 16 8 O -0.59 -22.40 16.19 10.76 0.17 -22.23 16 9 N -0.65 -17.40 3.46 -858.53 -2.97 -20.37 16 10 C 0.12 2.42 7.56 83.22 0.63 3.05 16 11 C -0.08 -2.22 0.83 -52.61 -0.04 -2.26 16 12 C 0.11 3.38 7.56 83.32 0.63 4.01 16 13 C -0.09 -2.81 5.25 30.57 0.16 -2.65 16 14 C 0.14 5.92 6.41 86.43 0.55 6.47 16 15 N -0.61 -29.83 2.96 -698.67 -2.07 -31.90 16 16 C -0.26 -14.04 9.56 84.03 0.80 -13.24 16 17 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 18 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 19 N -0.94 -55.08 11.15 21.65 0.24 -54.84 16 20 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.18 8.07 5.27 86.42 0.46 8.53 16 25 C -0.11 -3.53 5.31 30.57 0.16 -3.37 16 26 C -0.11 -1.56 2.85 -10.80 -0.03 -1.59 16 27 C -0.14 -1.76 8.64 71.98 0.62 -1.14 16 28 C -0.15 -1.61 8.79 71.98 0.63 -0.98 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.01 7.39 -2.38 -0.02 0.99 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.13 1.80 6.38 -2.39 -0.02 1.78 16 35 H 0.12 1.90 6.67 -2.39 -0.02 1.88 16 36 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.11 1.76 8.09 -2.38 -0.02 1.74 16 38 H 0.09 2.57 8.06 -2.39 -0.02 2.55 16 39 H 0.05 1.72 7.53 -2.39 -0.02 1.71 16 40 H 0.06 1.85 7.95 -2.39 -0.02 1.83 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 2.12 7.92 -2.39 -0.02 2.11 16 43 H 0.00 0.02 7.59 -2.39 -0.02 0.00 16 44 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 45 H 0.06 3.04 5.94 -2.39 -0.01 3.02 16 46 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 49 H 0.07 1.01 7.41 -2.38 -0.02 0.99 16 50 H 0.06 0.70 6.48 -2.39 -0.02 0.69 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.05 0.75 7.77 -2.39 -0.02 0.73 16 53 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 55 H 0.07 0.63 6.64 -2.39 -0.02 0.62 16 Total: -1.00 -71.76 420.25 4.13 -67.63 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.83 Total: 15.72 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 7.07 Total: 10.40 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -4.80 Total: -107.10 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.00 Total: -33.02 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.76 4.13 -67.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326585443.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.826 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds