Wall clock time and date at job start Tue Mar 31 2020 23:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 114.00117 * 2 1 4 4 H 1.09007 * 109.47164 * 30.00358 * 3 2 1 5 5 C 1.50704 * 109.47402 * 270.00508 * 3 2 1 6 6 O 1.21282 * 119.99977 * 170.94378 * 5 3 2 7 7 N 1.34771 * 119.99674 * 350.94331 * 5 3 2 8 8 C 1.46503 * 120.00266 * 183.97455 * 7 5 3 9 9 H 1.09007 * 108.44540 * 327.31347 * 8 7 5 10 10 C 1.52558 * 108.51753 * 209.76810 * 8 7 5 11 11 C 1.50881 * 109.36100 * 153.73441 * 10 8 7 12 12 C 1.53948 * 110.09702 * 91.88377 * 11 10 8 13 13 N 1.47604 * 112.14054 * 319.43579 * 12 11 10 14 14 C 1.36938 * 118.64087 * 137.88870 * 13 12 11 15 15 H 1.08000 * 120.00410 * 210.39276 * 14 13 12 16 16 C 1.38811 * 119.99860 * 30.39555 * 14 13 12 17 17 N 1.31619 * 120.00437 * 11.64770 * 16 14 13 18 18 Si 1.86805 * 120.00050 * 191.64909 * 16 14 13 19 19 H 1.48501 * 109.47378 * 89.99851 * 18 16 14 20 20 H 1.48499 * 109.47165 * 210.00246 * 18 16 14 21 21 H 1.48500 * 109.46688 * 329.99905 * 18 16 14 22 22 C 1.44579 * 122.71443 * 317.86761 * 13 12 11 23 23 C 1.47100 * 108.51128 * 84.99789 * 8 7 5 24 24 C 1.52998 * 109.47073 * 150.00331 * 3 2 1 25 25 C 1.52999 * 109.47173 * 185.99674 * 24 3 2 26 26 C 1.52998 * 109.47173 * 179.97438 * 25 24 3 27 27 C 1.52998 * 109.47224 * 300.00066 * 26 25 24 28 28 C 1.52999 * 109.47100 * 59.99889 * 27 26 25 29 29 C 1.52998 * 109.47224 * 305.99740 * 24 3 2 30 30 H 1.09002 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46645 * 299.99627 * 1 2 3 32 32 H 1.08995 * 109.47088 * 59.99276 * 1 2 3 33 33 H 0.97004 * 120.00580 * 3.97962 * 7 5 3 34 34 H 1.08999 * 109.49251 * 273.69614 * 10 8 7 35 35 H 1.08998 * 109.49099 * 33.76539 * 10 8 7 36 36 H 1.09002 * 109.36402 * 331.69327 * 11 10 8 37 37 H 1.09003 * 109.26398 * 212.01436 * 11 10 8 38 38 H 1.09005 * 108.94649 * 198.75162 * 12 11 10 39 39 H 1.08996 * 108.87326 * 80.07744 * 12 11 10 40 40 H 0.96995 * 120.00308 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.45117 * 330.68758 * 22 13 12 42 42 H 1.08995 * 109.42524 * 210.75291 * 22 13 12 43 43 H 1.08997 * 109.32640 * 304.32235 * 23 8 7 44 44 H 1.09000 * 109.32244 * 63.79722 * 23 8 7 45 45 H 1.08996 * 109.47169 * 65.99682 * 24 3 2 46 46 H 1.08997 * 109.47040 * 300.00252 * 25 24 3 47 47 H 1.09009 * 109.47349 * 59.99958 * 25 24 3 48 48 H 1.09001 * 109.47046 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47169 * 60.00007 * 26 25 24 50 50 H 1.09007 * 109.47442 * 300.00264 * 27 26 25 51 51 H 1.08994 * 109.47531 * 180.02562 * 27 26 25 52 52 H 1.09001 * 109.47372 * 180.02562 * 28 27 26 53 53 H 1.08996 * 109.47067 * 60.00197 * 28 27 26 54 54 H 1.09007 * 109.47442 * 300.00264 * 29 24 3 55 55 H 1.09001 * 109.47075 * 60.00059 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 2.5435 2.9097 -1.6467 7 7 2.0317 0.9022 -2.4404 8 6 2.3141 1.3227 -3.8150 9 1 2.0868 2.3850 -3.9044 10 6 1.3930 0.5526 -4.7562 11 6 1.1764 1.3576 -6.0138 12 6 2.2210 0.9705 -7.0763 13 7 3.5622 0.7742 -6.4921 14 6 4.3157 -0.2862 -6.9199 15 1 5.0180 -0.7560 -6.2473 16 6 4.1768 -0.7573 -8.2182 17 7 3.5015 -0.0562 -9.1041 18 14 4.9483 -2.3865 -8.7082 19 1 3.9780 -3.4852 -8.4703 20 1 5.3110 -2.3494 -10.1477 21 1 6.1694 -2.6200 -7.8960 22 6 4.1135 1.6555 -5.4872 23 6 3.7484 1.1284 -4.0775 24 6 3.3590 1.2632 0.7212 25 6 3.9116 2.6838 0.8530 26 6 5.2600 2.6416 1.5748 27 6 5.0744 2.0353 2.9672 28 6 4.5219 0.6147 2.8353 29 6 3.1741 0.6566 2.1136 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.7130 0.0031 -2.2641 34 1 1.8503 -0.4036 -5.0109 35 1 0.4351 0.3788 -4.2661 36 1 1.2706 2.4190 -5.7841 37 1 0.1768 1.1588 -6.4003 38 1 2.2734 1.7606 -7.8254 39 1 1.9064 0.0455 -7.5594 40 1 3.4041 -0.3856 -10.0112 41 1 3.7030 2.6567 -5.6179 42 1 5.1978 1.6912 -5.5918 43 1 4.3285 1.6684 -3.3291 44 1 3.9856 0.0663 -4.0167 45 1 4.0580 0.6531 0.1491 46 1 4.0434 3.1159 -0.1389 47 1 3.2126 3.2939 1.4252 48 1 5.6534 3.6537 1.6691 49 1 5.9592 2.0314 1.0030 50 1 4.3752 2.6454 3.5390 51 1 6.0349 2.0056 3.4815 52 1 4.3892 0.1828 3.8273 53 1 5.2210 0.0045 2.2636 54 1 2.4750 1.2667 2.6858 55 1 2.7804 -0.3555 2.0196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327171718.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:04 Heat of formation + Delta-G solvation = -104.479904 kcal Electronic energy + Delta-G solvation = -31737.860680 eV Core-core repulsion = 27773.512406 eV Total energy + Delta-G solvation = -3964.348274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62955 -39.93837 -38.80852 -38.24131 -36.36357 -34.04709 -33.32881 -32.95253 -31.65089 -31.58762 -28.49965 -27.78997 -26.76517 -25.66756 -24.91180 -23.46623 -22.79362 -21.55860 -21.44987 -20.85575 -20.67831 -18.63894 -18.53005 -17.77686 -17.25757 -17.01510 -16.61956 -15.94007 -15.77306 -15.58133 -15.49390 -15.25836 -15.13190 -14.98619 -14.92833 -14.75857 -14.32638 -14.13730 -13.61438 -13.59132 -13.26839 -13.17995 -13.03290 -12.98835 -12.78291 -12.72260 -12.47711 -12.41156 -12.13943 -12.05932 -11.98736 -11.87328 -11.78427 -11.64598 -11.52283 -11.47385 -11.37408 -11.34454 -11.15281 -10.92453 -10.48589 -10.18623 -10.04018 -8.60146 -7.84242 -5.36133 1.46931 1.47616 1.54870 1.56638 2.20062 2.51730 2.59119 3.29934 3.61476 3.65742 3.69935 3.76038 3.83131 4.00855 4.05104 4.10045 4.29467 4.32282 4.38469 4.43017 4.43163 4.43761 4.53257 4.54824 4.62199 4.63913 4.65714 4.68266 4.76205 4.85728 4.89889 4.94364 4.97242 5.01639 5.11112 5.12068 5.21850 5.22686 5.23229 5.26283 5.29435 5.31724 5.42978 5.47088 5.50335 5.56760 5.57783 5.60751 5.69063 5.80813 5.94163 6.43685 6.62311 7.20543 7.24695 7.94312 8.35654 9.20430 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002826 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.701856 B = 9906.193962 C =10401.572435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.381 6.381 3 C 0.090 3.910 4 H 0.104 0.896 5 C 0.489 3.511 6 O -0.574 6.574 7 N -0.710 5.710 8 C 0.166 3.834 9 H 0.061 0.939 10 C -0.100 4.100 11 C -0.129 4.129 12 C 0.189 3.811 13 N -0.601 5.601 14 C -0.265 4.265 15 H 0.061 0.939 16 C -0.044 4.044 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.271 1.271 22 C 0.161 3.839 23 C -0.132 4.132 24 C -0.070 4.070 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.100 4.100 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.077 0.923 38 H -0.007 1.007 39 H 0.042 0.958 40 H 0.249 0.751 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.076 0.924 53 H 0.054 0.946 54 H 0.071 0.929 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 0.945 25.841 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.300 6.300 3 C 0.029 3.971 4 H 0.122 0.878 5 C 0.276 3.724 6 O -0.454 6.454 7 N -0.361 5.361 8 C 0.062 3.938 9 H 0.079 0.921 10 C -0.138 4.138 11 C -0.168 4.168 12 C 0.064 3.936 13 N -0.323 5.323 14 C -0.396 4.396 15 H 0.079 0.921 16 C -0.240 4.240 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.196 1.196 22 C 0.033 3.967 23 C -0.174 4.174 24 C -0.089 4.089 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.156 4.156 29 C -0.138 4.138 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.012 0.988 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.095 0.905 53 H 0.073 0.927 54 H 0.089 0.911 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.895 1.562 25.506 26.225 hybrid contribution 0.255 -0.801 -1.131 1.409 sum -5.641 0.762 24.375 25.030 Atomic orbital electron populations 1.23140 0.79164 1.04647 1.00991 1.87937 1.21584 1.25842 1.94606 1.22398 0.97905 0.86321 0.90521 0.87795 1.21757 0.76443 0.85211 0.89025 1.90672 1.49026 1.20011 1.85693 1.46324 1.66575 1.17012 1.06206 1.19734 0.94666 0.98874 0.80516 0.92079 1.21106 0.98583 0.99269 0.94811 1.21840 0.99551 0.99220 0.96216 1.20781 0.83027 0.98132 0.91668 1.43800 1.13708 1.29542 1.45241 1.19441 1.18917 1.07292 0.93916 0.92129 1.25851 1.00596 1.01975 0.95539 1.70197 1.46243 1.38442 1.03184 0.85316 0.78520 0.80193 0.76686 1.20943 1.22245 1.19614 1.20640 0.96268 0.92074 0.87698 1.21587 0.96216 1.01034 0.98525 1.21060 0.92797 0.97828 0.97183 1.21620 0.97630 0.95156 1.01043 1.21511 0.96279 1.01083 0.96649 1.21546 1.01469 0.96313 0.96088 1.21532 0.96389 0.96933 1.00776 1.21425 0.97951 1.01401 0.92978 0.87340 0.92086 0.94150 0.75273 0.92252 0.90083 0.92856 0.90397 0.98844 0.93944 0.94166 0.94650 0.94462 0.93096 0.93002 0.92019 0.92679 0.91238 0.91583 0.92974 0.91290 0.91334 0.90495 0.92701 0.91074 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.75 113.37 1.22 1.42 16 2 O -0.38 -6.83 8.20 -148.98 -1.22 -8.05 16 3 C 0.09 1.83 2.20 29.85 0.07 1.90 16 4 H 0.10 1.85 7.79 -2.38 -0.02 1.83 16 5 C 0.49 13.68 6.85 87.66 0.60 14.28 16 6 O -0.57 -20.10 14.41 -3.04 -0.04 -20.14 16 7 N -0.71 -19.64 4.83 -452.04 -2.18 -21.83 16 8 C 0.17 5.54 1.99 43.01 0.09 5.62 16 9 H 0.06 2.25 6.60 -2.38 -0.02 2.23 16 10 C -0.10 -3.27 5.00 29.76 0.15 -3.12 16 11 C -0.13 -4.71 5.71 30.23 0.17 -4.53 16 12 C 0.19 9.11 4.64 86.49 0.40 9.51 16 13 N -0.60 -30.14 2.26 -698.38 -1.58 -31.72 16 14 C -0.27 -14.56 9.41 84.03 0.79 -13.77 16 15 H 0.06 3.29 7.86 -2.91 -0.02 3.27 16 16 C -0.04 -2.45 4.95 84.86 0.42 -2.03 16 17 N -0.93 -55.24 11.04 21.65 0.24 -55.00 16 18 Si 0.96 44.95 29.57 68.60 2.03 46.98 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.16 7.08 5.66 87.37 0.49 7.58 16 23 C -0.13 -5.00 5.20 29.40 0.15 -4.84 16 24 C -0.07 -1.38 1.95 -10.80 -0.02 -1.40 16 25 C -0.12 -2.45 4.87 30.59 0.15 -2.30 16 26 C -0.12 -2.11 5.92 30.59 0.18 -1.92 16 27 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 28 C -0.12 -1.63 5.92 30.58 0.18 -1.45 16 29 C -0.10 -1.49 4.99 30.58 0.15 -1.34 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.41 9.88 7.38 -92.71 -0.68 9.20 16 34 H 0.06 2.24 7.48 -2.39 -0.02 2.23 16 35 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 36 H 0.05 1.90 7.31 -2.39 -0.02 1.88 16 37 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 38 H -0.01 -0.35 7.99 -2.38 -0.02 -0.37 16 39 H 0.04 2.27 6.52 -2.39 -0.02 2.25 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 42 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 43 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.52 6.01 -2.39 -0.01 1.51 16 47 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 50 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 55 H 0.07 1.11 7.54 -2.39 -0.02 1.09 16 Total: -1.00 -65.75 410.40 2.77 -62.98 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.16 Total: 24.61 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.37 Total: 2.17 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.52 Total: -108.55 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.27 Total: -28.19 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.75 2.77 -62.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327171718.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.498 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds