Wall clock time and date at job start Tue Mar 31 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00305 * 2 1 4 4 H 1.09000 * 109.46764 * 29.99855 * 3 2 1 5 5 C 1.50697 * 109.46927 * 270.00180 * 3 2 1 6 6 O 1.21283 * 120.00344 * 354.99557 * 5 3 2 7 7 N 1.34778 * 119.99861 * 175.00071 * 5 3 2 8 8 C 1.46501 * 119.99850 * 175.09087 * 7 5 3 9 9 C 1.52995 * 109.47559 * 60.22813 * 8 7 5 10 10 N 1.46500 * 109.47260 * 54.50380 * 9 8 7 11 11 C 1.36934 * 120.00292 * 184.89921 * 10 9 8 12 12 H 1.08005 * 119.99768 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00426 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99586 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00294 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46784 * 59.99821 * 15 13 11 17 17 H 1.48494 * 109.47270 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46876 * 300.00022 * 15 13 11 19 19 C 1.53004 * 109.46851 * 180.22696 * 8 7 5 20 20 C 1.53004 * 109.46998 * 59.99889 * 19 8 7 21 21 C 1.52993 * 109.47437 * 59.99963 * 20 19 8 22 22 C 1.53004 * 109.47057 * 300.00000 * 21 20 19 23 23 C 1.52995 * 109.46943 * 59.99880 * 22 21 20 24 24 C 1.53000 * 109.47121 * 149.99923 * 3 2 1 25 25 C 1.54267 * 110.03219 * 57.91249 * 24 3 2 26 26 C 1.54966 * 104.15822 * 217.13504 * 25 24 3 27 27 C 1.54892 * 102.77723 * 37.88777 * 26 25 24 28 28 C 1.53873 * 110.03430 * 300.69115 * 24 3 2 29 29 H 1.09004 * 109.47525 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47316 * 299.99894 * 1 2 3 31 31 H 1.09004 * 109.47276 * 60.00076 * 1 2 3 32 32 H 0.97001 * 119.99633 * 355.08022 * 7 5 3 33 33 H 1.08997 * 109.47514 * 174.50837 * 9 8 7 34 34 H 1.09003 * 109.46783 * 294.50676 * 9 8 7 35 35 H 0.97002 * 120.00175 * 4.90617 * 10 9 8 36 36 H 0.97002 * 119.99526 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47059 * 299.99987 * 19 8 7 38 38 H 1.08999 * 109.47379 * 179.97438 * 19 8 7 39 39 H 1.08999 * 109.47226 * 299.99439 * 20 19 8 40 40 H 1.09005 * 109.46905 * 180.02562 * 20 19 8 41 41 H 1.08999 * 109.47341 * 59.99546 * 21 20 19 42 42 H 1.09003 * 109.47479 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47059 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.47145 * 299.99705 * 22 21 20 45 45 H 1.09005 * 109.46850 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47375 * 60.00503 * 23 22 21 47 47 H 1.08998 * 110.01521 * 179.29780 * 24 3 2 48 48 H 1.08999 * 110.48532 * 335.77479 * 25 24 3 49 49 H 1.08998 * 110.49132 * 98.42353 * 25 24 3 50 50 H 1.08996 * 110.71874 * 279.57048 * 26 25 24 51 51 H 1.08998 * 110.92512 * 156.29456 * 26 25 24 52 52 H 1.09004 * 110.48145 * 203.41151 * 27 26 25 53 53 H 1.08996 * 110.60185 * 80.81865 * 27 26 25 54 54 H 1.08999 * 110.03420 * 238.57300 * 28 24 3 55 55 H 1.09004 * 110.03012 * 359.95222 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.9601 3.4234 -3.0421 9 6 1.6967 3.3091 -3.8974 10 7 0.6137 4.0731 -3.2734 11 6 -0.6464 4.0365 -3.8081 12 1 -0.8419 3.4439 -4.6897 13 6 -1.6725 4.7609 -3.2172 14 7 -1.4344 5.4826 -2.1426 15 14 -3.3917 4.7103 -3.9463 16 1 -3.8906 3.3116 -3.9409 17 1 -4.2985 5.5620 -3.1354 18 1 -3.3526 5.2166 -5.3417 19 6 3.4483 4.8735 -3.0450 20 6 4.7118 4.9879 -2.1896 21 6 5.8016 4.0817 -2.7658 22 6 5.3133 2.6317 -2.7629 23 6 4.0500 2.5173 -3.6182 24 6 3.3589 1.2632 0.7213 25 6 4.2934 0.2453 0.0353 26 6 5.0701 -0.4060 1.2074 27 6 3.9915 -0.5167 2.3136 28 6 3.1673 0.7793 2.1693 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.7792 3.6384 -0.9374 33 1 1.8947 3.7061 -4.8930 34 1 1.4044 2.2619 -3.9754 35 1 0.7892 4.6051 -2.4815 36 1 -2.1515 5.9885 -1.7294 37 1 2.6719 5.5191 -2.6344 38 1 3.6729 5.1793 -4.0668 39 1 4.4876 4.6821 -1.1677 40 1 5.0593 6.0211 -2.1913 41 1 6.0257 4.3875 -3.7877 42 1 6.7015 4.1629 -2.1561 43 1 6.0896 1.9862 -3.1738 44 1 5.0892 2.3258 -1.7410 45 1 3.7024 1.4841 -3.6165 46 1 4.2741 2.8231 -4.6401 47 1 3.8162 2.2526 0.7156 48 1 3.7122 -0.5051 -0.5006 49 1 4.9794 0.7535 -0.6423 50 1 5.8901 0.2354 1.5302 51 1 5.4402 -1.3926 0.9286 52 1 4.4579 -0.5646 3.2976 53 1 3.3610 -1.3902 2.1483 54 1 3.5324 1.5336 2.8664 55 1 2.1134 0.5754 2.3585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329860566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:27 Heat of formation + Delta-G solvation = -114.614453 kcal Electronic energy + Delta-G solvation = -33143.135436 eV Core-core repulsion = 29178.347695 eV Total energy + Delta-G solvation = -3964.787741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84019 -40.08413 -38.40190 -37.53693 -36.39051 -34.63737 -33.29903 -31.84180 -31.65414 -30.45549 -29.51682 -27.60325 -27.02976 -26.27855 -24.69171 -23.49127 -22.40596 -21.63279 -21.36791 -20.64874 -19.94900 -19.24465 -18.64709 -17.61785 -17.02549 -16.75151 -16.41907 -16.39807 -16.02674 -15.80089 -15.47209 -15.18270 -15.06907 -14.87995 -14.63736 -14.50349 -14.16258 -14.09356 -13.81070 -13.63176 -13.40126 -13.13911 -13.03797 -12.85457 -12.74996 -12.59475 -12.57027 -12.23893 -12.15813 -12.05994 -11.91153 -11.88662 -11.79495 -11.62900 -11.53935 -11.39616 -11.33862 -11.27950 -11.10743 -10.98568 -10.87215 -10.01111 -9.80226 -8.94569 -7.96705 -5.22151 1.41926 1.44223 1.50497 1.80247 2.19238 2.53278 2.81588 3.35630 3.57205 3.67416 3.70354 3.81837 3.89202 3.90156 4.00232 4.11611 4.12387 4.27778 4.36078 4.41132 4.47712 4.49918 4.55097 4.60478 4.64289 4.65748 4.70523 4.74620 4.76861 4.81555 4.85886 4.89130 4.89795 4.92806 5.05285 5.13873 5.15503 5.18645 5.21527 5.26788 5.32057 5.34135 5.40455 5.41628 5.44243 5.49660 5.50617 5.58627 5.60104 5.79915 6.01971 6.26291 6.74955 7.33541 7.46695 8.08364 8.38049 9.25881 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.004668 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.267707 B = 5996.887715 C = 7809.293393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.078 3.922 4 H 0.084 0.916 5 C 0.499 3.501 6 O -0.562 6.562 7 N -0.697 5.697 8 C 0.186 3.814 9 C 0.141 3.859 10 N -0.726 5.726 11 C -0.244 4.244 12 H 0.058 0.942 13 C -0.065 4.065 14 N -0.961 5.961 15 Si 0.965 3.035 16 H -0.287 1.287 17 H -0.288 1.288 18 H -0.280 1.280 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.076 4.076 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.113 4.113 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.012 0.988 32 H 0.404 0.596 33 H 0.010 0.990 34 H 0.018 0.982 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.047 0.953 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.064 0.936 52 H 0.079 0.921 53 H 0.053 0.947 54 H 0.084 0.916 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.151 -6.243 10.181 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.017 3.983 4 H 0.102 0.898 5 C 0.286 3.714 6 O -0.441 6.441 7 N -0.351 5.351 8 C 0.100 3.900 9 C 0.013 3.987 10 N -0.369 5.369 11 C -0.376 4.376 12 H 0.076 0.924 13 C -0.258 4.258 14 N -0.612 5.612 15 Si 0.794 3.206 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.206 1.206 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.095 4.095 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.150 4.150 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.240 0.760 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.211 0.789 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.083 0.917 52 H 0.097 0.903 53 H 0.072 0.928 54 H 0.103 0.897 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.967 -7.016 9.403 21.458 hybrid contribution -2.013 0.637 -0.446 2.158 sum 15.954 -6.379 8.957 19.377 Atomic orbital electron populations 1.22862 0.80512 1.03620 0.99512 1.87897 1.20090 1.25714 1.94331 1.22233 0.98196 0.86328 0.91581 0.89843 1.21503 0.75723 0.81906 0.92298 1.90618 1.50680 1.55661 1.47096 1.45838 1.67144 1.13086 1.08999 1.20377 0.92740 0.95329 0.81550 1.21169 0.88646 0.94497 0.94374 1.42224 1.05190 1.56068 1.33394 1.19459 0.87840 1.22426 1.07868 0.92435 1.25353 1.01229 1.00444 0.98766 1.69762 1.32703 1.35441 1.23273 0.85345 0.80449 0.77071 0.77702 1.21324 1.21383 1.20614 1.21712 0.98296 0.93220 1.01931 1.21527 0.93774 1.00676 0.98919 1.21514 0.98001 0.93735 1.01623 1.21486 0.95488 0.97678 0.99913 1.21776 0.95092 0.99325 0.99724 1.21935 0.90796 1.01329 0.95426 1.22371 0.97346 0.97815 0.98007 1.22460 0.97680 1.00649 0.94564 1.22291 0.96929 0.97201 0.99147 1.22121 1.00606 0.98107 0.94189 0.87804 0.92406 0.96891 0.76036 0.97192 0.96420 0.78910 0.93959 0.92819 0.90821 0.91302 0.90442 0.91869 0.90071 0.91381 0.91724 0.92957 0.91256 0.87744 0.93415 0.91577 0.90045 0.91713 0.90269 0.92809 0.89727 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.81 113.37 1.23 2.19 16 2 O -0.36 -11.63 8.34 -129.99 -1.08 -12.72 16 3 C 0.08 2.27 2.06 29.85 0.06 2.34 16 4 H 0.08 2.38 7.79 -2.39 -0.02 2.36 16 5 C 0.50 17.63 5.92 87.66 0.52 18.15 16 6 O -0.56 -24.93 12.81 15.95 0.20 -24.72 16 7 N -0.70 -21.75 3.48 -422.92 -1.47 -23.22 16 8 C 0.19 6.15 0.32 3.60 0.00 6.15 16 9 C 0.14 6.34 4.85 86.38 0.42 6.76 16 10 N -0.73 -38.09 5.18 -343.46 -1.78 -39.88 16 11 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 12 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 13 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 14 N -0.96 -58.08 13.06 21.65 0.28 -57.80 16 15 Si 0.96 47.64 29.55 68.60 2.03 49.67 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 C -0.11 -3.23 4.65 30.60 0.14 -3.09 16 20 C -0.11 -2.21 5.75 30.59 0.18 -2.03 16 21 C -0.11 -1.95 5.92 30.59 0.18 -1.77 16 22 C -0.11 -2.31 5.77 30.59 0.18 -2.14 16 23 C -0.12 -3.53 4.52 30.59 0.14 -3.39 16 24 C -0.08 -1.61 2.79 -10.07 -0.03 -1.63 16 25 C -0.12 -2.63 5.65 31.70 0.18 -2.45 16 26 C -0.12 -1.95 6.91 31.91 0.22 -1.73 16 27 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 28 C -0.11 -2.00 6.22 31.32 0.19 -1.81 16 29 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.40 10.69 7.31 -92.71 -0.68 10.02 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.02 0.92 6.21 -2.39 -0.01 0.90 16 35 H 0.38 20.07 6.47 -92.71 -0.60 19.47 16 36 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 37 H 0.05 1.81 7.11 -2.39 -0.02 1.79 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.24 6.87 -2.39 -0.02 1.22 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.38 5.80 -2.39 -0.01 1.37 16 45 H 0.05 1.86 6.33 -2.38 -0.02 1.84 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 1.78 8.12 -2.39 -0.02 1.77 16 48 H 0.05 1.40 7.15 -2.39 -0.02 1.38 16 49 H 0.07 1.42 6.34 -2.39 -0.02 1.41 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 53 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 55 H 0.06 1.17 7.40 -2.39 -0.02 1.15 16 Total: -1.00 -72.71 409.29 2.90 -69.81 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -0.41 Total: 41.97 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.13 Total: -3.11 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -2.97 Total: -120.89 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.88 Total: -37.44 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -72.71 2.90 -69.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329860566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.802 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds