Wall clock time and date at job start Tue Mar 31 2020 22:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00308 * 2 1 4 4 H 1.08996 * 109.47137 * 327.72513 * 3 2 1 5 5 C 1.50707 * 109.46918 * 87.72531 * 3 2 1 6 6 O 1.21276 * 119.99707 * 5.00237 * 5 3 2 7 7 N 1.34778 * 119.99550 * 184.99616 * 5 3 2 8 8 C 1.46505 * 119.99715 * 176.69786 * 7 5 3 9 9 C 1.53008 * 109.46915 * 59.42959 * 8 7 5 10 10 N 1.46497 * 109.46959 * 54.04410 * 9 8 7 11 11 C 1.36929 * 120.00214 * 184.59423 * 10 9 8 12 12 H 1.08005 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.38813 * 120.00617 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99701 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00208 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47477 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47225 * 120.00317 * 15 13 11 18 18 H 1.48508 * 109.47060 * 239.99616 * 15 13 11 19 19 C 1.53004 * 109.47157 * 299.43519 * 8 7 5 20 20 C 1.53001 * 109.46531 * 299.99707 * 19 8 7 21 21 C 1.53002 * 109.47366 * 299.99967 * 20 19 8 22 22 C 1.52995 * 109.46872 * 60.00353 * 21 20 19 23 23 C 1.52990 * 109.47000 * 179.43041 * 8 7 5 24 24 C 1.53000 * 109.46929 * 207.72120 * 3 2 1 25 25 C 1.54272 * 110.03109 * 175.07757 * 24 3 2 26 26 C 1.54894 * 104.19735 * 217.10995 * 25 24 3 27 27 C 1.54894 * 102.74781 * 37.93738 * 26 25 24 28 28 C 1.53878 * 110.03113 * 57.91568 * 24 3 2 29 29 H 1.08994 * 109.47499 * 185.59513 * 1 2 3 30 30 H 1.09001 * 109.47152 * 305.60108 * 1 2 3 31 31 H 1.09007 * 109.46757 * 65.59204 * 1 2 3 32 32 H 0.96993 * 120.00455 * 356.70724 * 7 5 3 33 33 H 1.08995 * 109.46593 * 174.04496 * 9 8 7 34 34 H 1.08996 * 109.47091 * 294.04892 * 9 8 7 35 35 H 0.97001 * 119.99814 * 4.59487 * 10 9 8 36 36 H 0.96998 * 120.00354 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.47464 * 59.99359 * 19 8 7 38 38 H 1.09002 * 109.47120 * 179.97438 * 19 8 7 39 39 H 1.08991 * 109.47454 * 60.00752 * 20 19 8 40 40 H 1.09009 * 109.46535 * 180.02562 * 20 19 8 41 41 H 1.09002 * 109.47193 * 300.00353 * 21 20 19 42 42 H 1.08998 * 109.47283 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47230 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47211 * 60.00011 * 22 21 20 45 45 H 1.09002 * 109.46944 * 180.02562 * 23 8 7 46 46 H 1.09001 * 109.47576 * 299.99895 * 23 8 7 47 47 H 1.08997 * 110.02476 * 296.51558 * 24 3 2 48 48 H 1.09008 * 110.48735 * 335.78418 * 25 24 3 49 49 H 1.08999 * 110.48680 * 98.42828 * 25 24 3 50 50 H 1.09000 * 110.75473 * 279.62864 * 26 25 24 51 51 H 1.08994 * 110.75663 * 156.25753 * 26 25 24 52 52 H 1.08993 * 110.48484 * 203.37998 * 27 26 25 53 53 H 1.09007 * 110.59093 * 80.79506 * 27 26 25 54 54 H 1.09000 * 110.02759 * 238.56660 * 28 24 3 55 55 H 1.09000 * 110.03066 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3643 1.9907 -0.5487 5 6 2.1630 1.7872 1.4198 6 8 1.8942 1.0483 2.3431 7 7 2.5986 3.0392 1.6632 8 6 2.6783 3.5321 3.0406 9 6 3.6207 2.6376 3.8486 10 7 4.9137 2.5477 3.1657 11 6 5.8906 1.7225 3.6553 12 1 5.7081 1.1382 4.5451 13 6 7.1159 1.6376 3.0086 14 7 7.3386 2.3500 1.9244 15 14 8.4483 0.5113 3.6760 16 1 7.9512 -0.1753 4.8953 17 1 8.8028 -0.4997 2.6477 18 1 9.6506 1.3140 4.0160 19 6 1.2851 3.5075 3.6726 20 6 0.3428 4.4019 2.8645 21 6 0.8769 5.8357 2.8630 22 6 2.2701 5.8603 2.2311 23 6 3.2124 4.9658 3.0390 24 6 3.3842 1.2518 -0.6710 25 6 3.9705 2.6739 -0.7890 26 6 4.7011 2.6715 -2.1548 27 6 3.7586 1.8241 -3.0451 28 6 3.2495 0.7116 -2.1055 29 1 -0.3634 -1.0227 0.1002 30 1 -0.3633 0.5982 0.8356 31 1 -0.3633 0.4247 -0.9359 32 1 2.8591 3.6140 0.9267 33 1 3.7631 3.0635 4.8418 34 1 3.1876 1.6415 3.9390 35 1 5.0777 3.0727 2.3668 36 1 8.1947 2.2905 1.4723 37 1 0.9046 2.4861 3.6736 38 1 1.3445 3.8738 4.6975 39 1 0.2834 4.0352 1.8399 40 1 -0.6496 4.3847 3.3150 41 1 0.9363 6.2024 3.8878 42 1 0.2054 6.4730 2.2877 43 1 2.6504 6.8817 2.2296 44 1 2.2107 5.4935 1.2063 45 1 3.2722 5.3323 4.0638 46 1 4.2050 4.9833 2.5888 47 1 4.0566 0.6167 -0.0944 48 1 3.1730 3.4170 -0.7843 49 1 4.6753 2.8643 0.0204 50 1 5.6795 2.1988 -2.0686 51 1 4.7936 3.6849 -2.5451 52 1 4.3088 1.3944 -3.8821 53 1 2.9266 2.4285 -3.4066 54 1 3.8572 -0.1854 -2.2252 55 1 2.2053 0.4872 -2.3234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329860567.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:32 Heat of formation + Delta-G solvation = -110.853272 kcal Electronic energy + Delta-G solvation = -33456.012581 eV Core-core repulsion = 29491.387937 eV Total energy + Delta-G solvation = -3964.624644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90136 -40.04175 -38.49642 -37.71371 -36.36687 -34.64852 -33.28019 -31.86898 -31.61264 -30.51291 -29.44479 -27.59036 -27.01103 -26.28545 -24.68091 -23.50628 -22.34101 -21.61365 -21.48854 -20.77235 -19.98973 -19.20545 -18.70116 -17.68804 -16.93250 -16.75571 -16.48304 -16.36773 -15.93661 -15.83540 -15.52943 -15.14920 -15.10744 -14.84948 -14.64459 -14.53515 -14.34820 -14.20840 -13.80597 -13.45890 -13.31744 -13.13426 -13.03481 -12.88726 -12.75106 -12.58983 -12.35133 -12.19466 -12.09013 -12.06375 -11.98035 -11.89733 -11.89357 -11.83942 -11.53491 -11.46403 -11.40651 -11.28624 -11.11729 -10.97865 -10.87424 -10.02879 -9.80738 -8.89912 -7.93118 -5.17534 1.40974 1.42521 1.51523 1.72279 2.23167 2.54455 2.77671 3.38723 3.56437 3.66960 3.72264 3.80146 3.86964 3.88766 3.96079 4.06600 4.12786 4.25776 4.29992 4.46724 4.48223 4.51565 4.54421 4.56647 4.60268 4.61823 4.66699 4.68474 4.80026 4.81315 4.85803 4.87959 4.88818 4.90649 5.07012 5.12909 5.14890 5.17767 5.19737 5.25215 5.30187 5.31623 5.33160 5.38906 5.46220 5.49737 5.50231 5.53902 5.55653 5.78099 6.08630 6.29588 6.73271 7.37250 7.43643 8.11797 8.42667 9.28919 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007601 B = 0.005945 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.792636 B = 4708.391495 C = 6421.656722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.116 0.884 5 C 0.491 3.509 6 O -0.565 6.565 7 N -0.696 5.696 8 C 0.181 3.819 9 C 0.140 3.860 10 N -0.723 5.723 11 C -0.242 4.242 12 H 0.055 0.945 13 C -0.062 4.062 14 N -0.951 5.951 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.287 1.287 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.079 4.079 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.107 4.107 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.379 0.621 36 H 0.250 0.750 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.032 0.968 48 H 0.090 0.910 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.087 0.913 52 H 0.073 0.927 53 H 0.090 0.910 54 H 0.051 0.949 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.123 8.302 -10.323 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.301 6.301 3 C 0.029 3.971 4 H 0.134 0.866 5 C 0.278 3.722 6 O -0.443 6.443 7 N -0.352 5.352 8 C 0.095 3.905 9 C 0.012 3.988 10 N -0.366 5.366 11 C -0.375 4.375 12 H 0.073 0.927 13 C -0.255 4.255 14 N -0.602 5.602 15 Si 0.790 3.210 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.214 1.214 19 C -0.161 4.161 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.098 4.098 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.144 4.144 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.213 0.787 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.106 0.894 52 H 0.091 0.909 53 H 0.108 0.892 54 H 0.070 0.930 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.161 7.479 -9.538 21.010 hybrid contribution 1.473 -0.758 0.554 1.747 sum -15.688 6.721 -8.984 19.287 Atomic orbital electron populations 1.22991 0.79416 1.03766 1.00781 1.87979 1.21636 1.26071 1.94393 1.22242 0.96890 0.86640 0.91334 0.86629 1.21681 0.76343 0.81631 0.92558 1.90611 1.51341 1.55405 1.46951 1.46158 1.66156 1.14278 1.08642 1.20438 0.94767 0.93523 0.81770 1.21158 0.86092 0.97401 0.94112 1.42191 1.10581 1.51808 1.32024 1.19471 0.93537 1.17278 1.07174 0.92704 1.25280 0.99587 1.02128 0.98539 1.69753 1.23964 1.45405 1.21063 0.85276 0.79856 0.78531 0.77328 1.20387 1.22241 1.21383 1.21801 0.93920 1.00609 0.99720 1.21424 0.97978 0.95175 0.99783 1.21522 0.95946 0.95886 1.01574 1.21541 0.94968 0.99586 0.98927 1.21723 0.99039 0.92309 1.02196 1.21670 0.92607 0.98343 0.97227 1.22456 0.99732 0.94452 0.98926 1.22419 0.97965 1.01124 0.94094 1.22378 0.99295 0.96320 0.97133 1.22065 1.02122 0.98449 0.91805 0.88747 0.94776 0.91100 0.75642 0.97087 0.96647 0.78723 0.94118 0.92906 0.91013 0.92403 0.91071 0.91642 0.89972 0.90196 0.91562 0.90594 0.92848 0.94900 0.89193 0.93177 0.93650 0.89419 0.90875 0.89176 0.93034 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.77 113.37 1.22 1.82 16 2 O -0.38 -12.29 9.22 -129.99 -1.20 -13.48 16 3 C 0.09 2.67 1.87 29.85 0.06 2.73 16 4 H 0.12 2.45 7.79 -2.39 -0.02 2.43 16 5 C 0.49 17.83 6.40 87.66 0.56 18.39 16 6 O -0.56 -25.54 12.78 15.97 0.20 -25.33 16 7 N -0.70 -22.10 3.07 -422.91 -1.30 -23.40 16 8 C 0.18 6.06 0.32 3.60 0.00 6.06 16 9 C 0.14 6.40 4.83 86.38 0.42 6.81 16 10 N -0.72 -38.23 5.18 -343.46 -1.78 -40.01 16 11 C -0.24 -14.49 9.99 84.04 0.84 -13.65 16 12 H 0.05 3.34 7.83 -2.91 -0.02 3.31 16 13 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 14 N -0.95 -57.44 13.06 21.65 0.28 -57.16 16 15 Si 0.96 48.67 29.55 68.60 2.03 50.70 16 16 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 17 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 18 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 19 C -0.12 -3.55 4.53 30.60 0.14 -3.41 16 20 C -0.11 -2.23 5.76 30.60 0.18 -2.05 16 21 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 22 C -0.11 -2.23 5.75 30.59 0.18 -2.05 16 23 C -0.11 -3.28 4.66 30.59 0.14 -3.14 16 24 C -0.08 -2.50 2.70 -10.07 -0.03 -2.53 16 25 C -0.12 -3.35 4.52 31.67 0.14 -3.21 16 26 C -0.12 -2.92 6.91 31.89 0.22 -2.70 16 27 C -0.11 -2.23 6.83 31.67 0.22 -2.02 16 28 C -0.11 -2.65 6.20 31.32 0.19 -2.45 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 0.83 8.04 -2.39 -0.02 0.82 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.40 11.01 4.10 -92.71 -0.38 10.63 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.02 0.82 6.22 -2.39 -0.01 0.80 16 35 H 0.38 20.14 6.45 -92.71 -0.60 19.55 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.05 1.85 6.32 -2.39 -0.02 1.84 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.22 7.60 -2.39 -0.02 1.20 16 40 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.21 6.85 -2.39 -0.02 1.19 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.05 1.81 7.15 -2.39 -0.02 1.79 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.90 6.39 -2.38 -0.02 1.88 16 49 H 0.05 1.90 7.92 -2.39 -0.02 1.88 16 50 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 53 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 54 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 55 H 0.08 1.74 7.35 -2.39 -0.02 1.72 16 Total: -1.00 -75.38 408.10 3.25 -72.13 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.11 Total: 42.92 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.12 Total: -6.36 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -2.80 Total: -120.57 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.99 Total: -38.82 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -75.38 3.25 -72.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329860567.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.722 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds