Wall clock time and date at job start Tue Mar 31 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99873 * 2 1 4 4 H 1.08000 * 120.00036 * 202.70255 * 3 2 1 5 5 C 1.38817 * 120.00125 * 22.70718 * 3 2 1 6 6 N 1.31622 * 119.99811 * 11.51483 * 5 3 2 7 7 Si 1.86799 * 119.99994 * 191.51470 * 5 3 2 8 8 H 1.48494 * 109.46875 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46858 * 119.99818 * 7 5 3 10 10 H 1.48498 * 109.47046 * 239.99672 * 7 5 3 11 11 C 1.46496 * 119.99941 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47267 * 269.99709 * 11 2 1 13 13 O 1.42902 * 109.46768 * 65.00341 * 12 11 2 14 14 C 1.42902 * 113.99971 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47095 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47416 * 64.99525 * 15 14 13 17 17 C 1.34783 * 120.00147 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99487 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99915 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46696 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46991 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.46782 * 299.99704 * 21 20 19 23 23 C 1.53009 * 109.47139 * 180.02562 * 22 21 20 24 24 C 1.52996 * 117.49710 * 128.74661 * 23 22 21 25 25 C 1.52994 * 117.49733 * 60.08495 * 23 22 21 26 26 C 1.53003 * 109.47116 * 60.00372 * 22 21 20 27 27 C 1.52998 * 109.47150 * 300.00153 * 19 17 16 28 28 H 1.09006 * 109.46737 * 273.91279 * 1 2 3 29 29 H 1.09000 * 109.47159 * 33.91161 * 1 2 3 30 30 H 1.09001 * 109.46871 * 153.91696 * 1 2 3 31 31 H 0.97003 * 119.99498 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47005 * 150.00447 * 11 2 1 33 33 H 1.08994 * 109.47230 * 29.99737 * 11 2 1 34 34 H 1.08998 * 109.47714 * 305.00259 * 12 11 2 35 35 H 1.09001 * 109.47313 * 185.00086 * 12 11 2 36 36 H 1.08995 * 109.47611 * 59.99431 * 14 13 12 37 37 H 1.09004 * 109.46743 * 299.99727 * 14 13 12 38 38 H 1.08999 * 109.46778 * 304.99060 * 15 14 13 39 39 H 1.09004 * 109.47129 * 184.99848 * 15 14 13 40 40 H 0.96998 * 120.00406 * 0.02562 * 16 15 14 41 41 H 1.09001 * 109.47075 * 60.00669 * 19 17 16 42 42 H 1.08997 * 109.47501 * 59.99960 * 20 19 17 43 43 H 1.09005 * 109.46814 * 299.99646 * 20 19 17 44 44 H 1.09000 * 109.47430 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47250 * 59.99537 * 21 20 19 46 46 H 1.09001 * 109.47553 * 300.00086 * 22 21 20 47 47 H 1.08997 * 115.54913 * 274.41875 * 23 22 21 48 48 H 1.08997 * 117.50198 * 0.02562 * 24 23 22 49 49 H 1.09002 * 117.49766 * 145.02199 * 24 23 22 50 50 H 1.09000 * 117.50263 * 214.97751 * 25 23 22 51 51 H 1.09002 * 117.50240 * 359.97438 * 25 23 22 52 52 H 1.08997 * 109.47501 * 59.99810 * 26 22 21 53 53 H 1.09005 * 109.46814 * 180.02562 * 26 22 21 54 54 H 1.08997 * 109.47091 * 300.00067 * 27 19 17 55 55 H 1.08995 * 109.47200 * 60.00478 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1670 1.2222 -0.3610 5 6 1.5363 2.3415 0.4641 6 7 0.3918 2.2653 1.1096 7 14 2.3353 4.0047 0.1724 8 1 3.6073 3.8192 -0.5709 9 1 1.4182 4.8620 -0.6208 10 1 2.6155 4.6549 1.4778 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 8 1.2061 -1.9926 2.0823 14 6 1.3324 -2.4149 3.4416 15 6 -0.0566 -2.6890 4.0217 16 7 -0.6645 -3.8215 3.3189 17 6 -1.8967 -4.2455 3.6633 18 8 -2.5022 -3.6892 4.5548 19 6 -2.5218 -5.4109 2.9407 20 6 -3.9109 -5.6848 3.5208 21 6 -4.5453 -6.8684 2.7877 22 6 -4.6704 -6.5383 1.2990 23 6 -5.3055 -7.7217 0.5658 24 6 -6.5086 -7.4319 -0.3339 25 6 -6.7072 -8.1528 1.0017 26 6 -3.2813 -6.2644 0.7189 27 6 -2.6474 -5.0801 1.4522 28 1 -0.3633 0.0701 1.0254 29 1 -0.3633 0.8529 -0.5733 30 1 -0.3633 -0.9230 -0.4518 31 1 -0.0370 3.0729 1.4335 32 1 3.1500 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5129 34 1 2.9643 -0.9122 1.9820 35 1 3.0733 -2.6057 1.4450 36 1 1.8207 -1.6318 4.0215 37 1 1.9301 -3.3254 3.4851 38 1 -0.6829 -1.8056 3.8975 39 1 0.0326 -2.9249 5.0821 40 1 -0.1801 -4.2667 2.6062 41 1 -1.8951 -6.2940 3.0651 42 1 -4.5374 -4.8017 3.3962 43 1 -3.8217 -5.9204 4.5814 44 1 -5.5347 -7.0639 3.2012 45 1 -3.9187 -7.7514 2.9126 46 1 -5.2970 -5.6552 1.1739 47 1 -4.6151 -8.5025 0.2470 48 1 -6.8474 -6.3983 -0.4039 49 1 -6.6099 -8.0225 -1.2445 50 1 -6.9392 -9.2174 0.9693 51 1 -7.1768 -7.5939 1.8111 52 1 -2.6547 -7.1474 0.8438 53 1 -3.3705 -6.0288 -0.3417 54 1 -3.2741 -4.1970 1.3280 55 1 -1.6581 -4.8847 1.0387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331160559.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:11 Heat of formation + Delta-G solvation = -82.616270 kcal Electronic energy + Delta-G solvation = -30154.058495 eV Core-core repulsion = 26190.658299 eV Total energy + Delta-G solvation = -3963.400196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27459 -39.63585 -38.99318 -37.25321 -36.94071 -35.70150 -33.42027 -32.10727 -31.67663 -30.61628 -29.25295 -27.81735 -25.43387 -24.80696 -23.94292 -23.29144 -22.79018 -22.13475 -21.96126 -20.84194 -20.62040 -18.77438 -18.19880 -17.63467 -17.38733 -16.96205 -16.82729 -16.24218 -16.04482 -15.59061 -15.40317 -15.23966 -15.19009 -15.00838 -14.86390 -14.70314 -14.17032 -13.97839 -13.77839 -13.41139 -13.15855 -13.12775 -13.04344 -12.93372 -12.75452 -12.52531 -12.47254 -12.40492 -12.32853 -12.22750 -12.02177 -11.99092 -11.78150 -11.66797 -11.55485 -11.46735 -11.28529 -10.97946 -10.65699 -10.62480 -10.55239 -10.36540 -10.09319 -8.73076 -7.78239 -5.26338 1.45403 1.46609 1.56920 1.64393 2.24204 2.52264 2.87110 2.96306 3.35032 3.56540 3.68637 3.77559 3.81799 3.92704 4.02728 4.08494 4.10661 4.17617 4.27278 4.41865 4.44373 4.45475 4.53754 4.55705 4.58636 4.59591 4.61420 4.64381 4.68594 4.69633 4.83859 4.89114 4.91159 4.94755 5.01143 5.02439 5.10835 5.17154 5.20357 5.22159 5.28291 5.31163 5.33579 5.37633 5.38153 5.43553 5.49301 5.63738 5.66579 5.83206 6.35630 6.47153 6.57809 7.18867 7.27203 7.92796 8.38118 9.24933 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002226 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.555651 B =12576.043588 C =13364.599193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.257 4.257 4 H 0.076 0.924 5 C -0.059 4.059 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.262 1.262 9 H -0.295 1.295 10 H -0.296 1.296 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.392 6.392 14 C 0.055 3.945 15 C 0.129 3.871 16 N -0.710 5.710 17 C 0.508 3.492 18 O -0.592 6.592 19 C -0.094 4.094 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.058 4.058 23 C -0.144 4.144 24 C -0.189 4.189 25 C -0.181 4.181 26 C -0.101 4.101 27 C -0.109 4.109 28 H -0.003 1.003 29 H 0.007 0.993 30 H 0.020 0.980 31 H 0.243 0.757 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.415 0.585 41 H 0.126 0.874 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.090 0.910 52 H 0.085 0.915 53 H 0.069 0.931 54 H 0.044 0.956 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -26.125 0.720 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.336 5.336 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.254 4.254 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.186 1.186 9 H -0.222 1.222 10 H -0.223 1.223 11 C 0.019 3.981 12 C -0.028 4.028 13 O -0.312 6.312 14 C -0.022 4.022 15 C 0.005 3.995 16 N -0.362 5.362 17 C 0.296 3.704 18 O -0.473 6.473 19 C -0.115 4.115 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.077 4.077 23 C -0.162 4.162 24 C -0.226 4.226 25 C -0.218 4.218 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.251 0.749 41 H 0.143 0.857 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.132 0.868 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.108 0.892 52 H 0.103 0.897 53 H 0.087 0.913 54 H 0.063 0.937 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.306 -25.579 1.287 26.376 hybrid contribution 0.446 1.656 0.171 1.724 sum -5.860 -23.923 1.458 24.673 Atomic orbital electron populations 1.20306 0.83006 0.94707 0.96898 1.44116 1.02021 1.01688 1.85805 1.19621 0.98359 0.86647 1.34141 0.90663 1.25837 0.98579 1.01951 0.99028 1.70304 1.19728 1.26991 1.41514 0.85205 0.78177 0.80239 0.76854 1.18584 1.22175 1.22324 1.21152 0.96809 0.87055 0.93104 1.23263 0.85347 0.97967 0.96181 1.87971 1.30922 1.87761 1.24539 1.22686 0.95766 0.99652 0.84111 1.21224 0.93036 0.88844 0.96420 1.45879 1.17703 1.33506 1.39085 1.21407 0.80799 0.85363 0.82787 1.90670 1.63120 1.59677 1.33849 1.21365 0.98275 0.96053 0.95786 1.21312 0.94022 0.98692 0.99504 1.21508 1.01118 0.97285 0.93915 1.20762 0.96424 0.96019 0.94477 1.22346 0.90872 1.00235 1.02761 1.23074 1.03079 1.01496 0.94966 1.22995 0.99565 1.01166 0.98048 1.21508 0.95346 0.97749 0.99259 1.21526 1.01970 0.98947 0.92221 0.98431 0.97393 0.96137 0.94753 0.90891 0.91941 0.96187 0.91062 0.92982 0.89971 0.94433 0.89342 0.74860 0.85652 0.93829 0.92049 0.91457 0.90172 0.92779 0.86799 0.89613 0.88230 0.87997 0.89188 0.89681 0.91272 0.93723 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.30 8.61 127.77 1.10 11.40 16 2 N -0.61 -31.02 2.89 -726.92 -2.10 -33.12 16 3 C -0.26 -14.16 9.67 84.03 0.81 -13.34 16 4 H 0.08 3.94 7.85 -2.91 -0.02 3.91 16 5 C -0.06 -3.40 5.12 84.86 0.43 -2.97 16 6 N -0.94 -57.83 10.62 21.65 0.23 -57.60 16 7 Si 0.97 45.94 29.57 68.60 2.03 47.97 16 8 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 9 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 C 0.14 5.55 6.11 86.38 0.53 6.08 16 12 C 0.05 1.76 6.28 71.98 0.45 2.21 16 13 O -0.39 -14.06 9.85 -148.98 -1.47 -15.52 16 14 C 0.05 1.52 6.07 71.98 0.44 1.96 16 15 C 0.13 3.77 6.06 86.38 0.52 4.29 16 16 N -0.71 -17.85 5.40 -463.06 -2.50 -20.35 16 17 C 0.51 14.01 7.15 87.66 0.63 14.64 16 18 O -0.59 -21.87 15.98 -3.05 -0.05 -21.91 16 19 C -0.09 -1.78 2.53 -11.54 -0.03 -1.81 16 20 C -0.10 -1.94 4.49 30.59 0.14 -1.80 16 21 C -0.10 -1.43 5.05 30.59 0.15 -1.28 16 22 C -0.06 -0.84 2.34 -10.79 -0.03 -0.86 16 23 C -0.14 -1.76 5.15 -10.79 -0.06 -1.81 16 24 C -0.19 -2.44 10.18 30.62 0.31 -2.13 16 25 C -0.18 -2.15 9.74 30.62 0.30 -1.85 16 26 C -0.10 -1.37 5.19 30.61 0.16 -1.21 16 27 C -0.11 -1.96 5.10 30.61 0.16 -1.80 16 28 H 0.00 -0.16 7.43 -2.38 -0.02 -0.17 16 29 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 30 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 31 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 33 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.41 8.27 7.89 -92.71 -0.73 7.54 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 43 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 44 H 0.07 0.94 7.29 -2.39 -0.02 0.92 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 0.97 7.90 -2.39 -0.02 0.95 16 47 H 0.11 1.17 8.11 -2.39 -0.02 1.15 16 48 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 49 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.09 1.14 7.61 -2.39 -0.02 1.12 16 52 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 54 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 55 H 0.08 1.31 7.56 -2.39 -0.02 1.29 16 Total: -1.00 -73.85 431.45 2.27 -71.58 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.10 Total: 19.25 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.02 Total: 9.71 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.37 Total: -111.07 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.52 Total: -37.44 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -73.85 2.27 -71.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331160559.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.034 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds