Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00005 * 2 1 4 4 C 1.53008 * 109.47318 * 183.25515 * 3 2 1 5 5 C 1.52995 * 109.47113 * 177.50744 * 4 3 2 6 6 C 1.50695 * 110.43479 * 293.88320 * 5 4 3 7 7 O 1.21287 * 120.00146 * 107.45688 * 6 5 4 8 8 N 1.34778 * 120.00445 * 287.45974 * 6 5 4 9 9 C 1.46503 * 119.99720 * 4.28835 * 8 6 5 10 10 C 1.46505 * 120.00352 * 184.28395 * 8 6 5 11 11 H 1.09004 * 109.46551 * 355.35860 * 10 8 6 12 12 C 1.52996 * 109.47109 * 235.35844 * 10 8 6 13 13 N 1.46503 * 109.47101 * 58.12767 * 12 10 8 14 14 C 1.36939 * 120.00107 * 185.11402 * 13 12 10 15 15 H 1.07997 * 119.99561 * 8.60262 * 14 13 12 16 16 C 1.38807 * 119.99873 * 188.60686 * 14 13 12 17 17 N 1.31623 * 120.00421 * 357.12982 * 16 14 13 18 18 Si 1.86810 * 119.99831 * 177.13129 * 16 14 13 19 19 H 1.48497 * 109.46891 * 89.99801 * 18 16 14 20 20 H 1.48492 * 109.47189 * 209.99787 * 18 16 14 21 21 H 1.48500 * 109.46992 * 330.00205 * 18 16 14 22 22 C 1.53001 * 109.46782 * 115.35735 * 10 8 6 23 23 C 1.53002 * 117.49593 * 184.99749 * 22 10 8 24 24 C 1.52994 * 60.03369 * 252.50225 * 23 22 10 25 25 C 1.54883 * 110.60187 * 56.50573 * 5 4 3 26 26 C 1.54891 * 102.75263 * 156.67576 * 25 5 4 27 27 C 1.54273 * 104.19072 * 322.05884 * 26 25 5 28 28 C 1.53875 * 106.60145 * 23.60876 * 27 26 25 29 29 H 1.08994 * 109.47311 * 185.41102 * 1 2 3 30 30 H 1.08999 * 109.47001 * 305.41102 * 1 2 3 31 31 H 1.09004 * 109.46793 * 65.40769 * 1 2 3 32 32 H 1.09003 * 109.47302 * 63.25477 * 3 2 1 33 33 H 1.09004 * 109.47103 * 303.25365 * 3 2 1 34 34 H 1.09005 * 109.46966 * 57.50647 * 4 3 2 35 35 H 1.09000 * 109.46681 * 297.50867 * 4 3 2 36 36 H 1.08997 * 109.46594 * 264.24752 * 9 8 6 37 37 H 1.08997 * 109.47350 * 24.24607 * 9 8 6 38 38 H 1.08999 * 109.47009 * 144.24984 * 9 8 6 39 39 H 1.09001 * 109.46810 * 178.11912 * 12 10 8 40 40 H 1.08995 * 109.47281 * 298.12507 * 12 10 8 41 41 H 0.96996 * 119.99783 * 5.11323 * 13 12 10 42 42 H 0.96996 * 120.00306 * 184.64074 * 17 16 14 43 43 H 1.09000 * 115.55338 * 330.67293 * 22 10 8 44 44 H 1.09000 * 117.49900 * 0.02562 * 23 22 10 45 45 H 1.09001 * 117.49802 * 144.99657 * 23 22 10 46 46 H 1.09001 * 117.49740 * 107.49985 * 24 23 22 47 47 H 1.08993 * 117.50248 * 252.51867 * 24 23 22 48 48 H 1.08999 * 110.75426 * 274.98684 * 25 5 4 49 49 H 1.09001 * 110.75682 * 38.35628 * 25 5 4 50 50 H 1.08994 * 110.48727 * 203.38562 * 26 25 5 51 51 H 1.08993 * 110.48702 * 80.72963 * 26 25 5 52 52 H 1.09005 * 110.03108 * 264.32473 * 27 26 25 53 53 H 1.08999 * 110.03300 * 142.89866 * 27 26 25 54 54 H 1.08995 * 110.03217 * 240.71658 * 28 27 26 55 55 H 1.08995 * 110.03322 * 119.28369 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5334 1.1856 -0.0819 5 6 4.1523 2.5834 -0.1446 6 6 3.7718 3.2701 -1.4309 7 8 2.9704 4.1804 -1.4184 8 7 4.3220 2.8727 -2.5953 9 6 5.2173 1.7135 -2.6245 10 6 4.0246 3.5999 -3.8319 11 1 3.2828 4.3726 -3.6296 12 6 3.4750 2.6263 -4.8764 13 7 2.2742 1.9724 -4.3503 14 6 1.6649 0.9787 -5.0692 15 1 2.1424 0.5809 -5.9524 16 6 0.4338 0.4831 -4.6627 17 7 -0.1219 0.9279 -3.5555 18 14 -0.4347 -0.8155 -5.6872 19 1 -0.0191 -2.1659 -5.2303 20 1 -1.9039 -0.6698 -5.5289 21 1 -0.0712 -0.6429 -7.1166 22 6 5.3047 4.2482 -4.3627 23 6 5.1815 5.1541 -5.5895 24 6 5.8272 3.7733 -5.7210 25 6 3.7092 3.4307 1.0739 26 6 4.8337 4.4906 1.1803 27 6 6.1201 3.7135 0.8323 28 6 5.6869 2.5009 -0.0101 29 1 -0.3633 -1.0230 0.0969 30 1 -0.3633 0.5955 0.8376 31 1 -0.3633 0.4277 -0.9345 32 1 1.7355 1.8255 0.9177 33 1 1.6432 1.8666 -0.8594 34 1 3.8063 0.6270 -0.9772 35 1 3.9046 0.6631 0.7997 36 1 6.2517 2.0519 -2.5647 37 1 4.9981 1.0637 -1.7773 38 1 5.0683 1.1626 -3.5531 39 1 3.2224 3.1728 -5.7851 40 1 4.2292 1.8729 -5.1032 41 1 1.9107 2.2432 -3.4928 42 1 -0.9487 0.5343 -3.2358 43 1 6.0416 4.5213 -3.6073 44 1 4.1884 5.2885 -6.0182 45 1 5.8373 6.0233 -5.6412 46 1 5.2588 2.9990 -6.2363 47 1 6.9076 3.7339 -5.8588 48 1 2.7469 3.9063 0.8843 49 1 3.6681 2.8192 1.9753 50 1 4.8898 4.8867 2.1942 51 1 4.6685 5.2953 0.4639 52 1 6.6118 3.3774 1.7452 53 1 6.7945 4.3468 0.2560 54 1 5.9683 1.5764 0.4940 55 1 6.1510 2.5457 -0.9953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331363195.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = -54.363249 kcal Electronic energy + Delta-G solvation = -33197.669092 eV Core-core repulsion = 29235.494039 eV Total energy + Delta-G solvation = -3962.175053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03285 -39.66932 -38.62827 -37.85298 -36.44722 -35.79940 -33.58993 -32.97430 -30.32944 -29.22220 -28.67668 -27.79770 -26.68411 -26.08828 -24.19655 -23.75069 -23.11120 -22.88486 -21.25308 -20.37354 -19.66273 -19.01388 -17.76180 -17.48194 -17.40221 -17.07178 -16.80734 -16.36958 -16.19948 -15.92039 -15.65554 -15.36804 -15.18084 -15.04765 -14.84511 -14.58352 -14.30896 -14.09041 -13.89050 -13.54752 -13.29809 -13.05633 -12.90166 -12.87171 -12.67401 -12.48851 -12.47344 -12.29109 -12.23086 -12.17310 -12.00200 -11.93530 -11.83117 -11.77327 -11.68105 -11.44366 -11.33501 -11.21303 -10.90624 -10.87752 -10.56244 -10.38519 -9.50103 -8.93385 -7.86564 -5.18297 1.44941 1.46432 1.53903 1.72503 2.05902 2.55714 2.80924 2.92303 3.42784 3.43236 3.57941 3.70055 3.71535 3.93607 4.03185 4.08185 4.08902 4.15622 4.24165 4.27294 4.32469 4.36706 4.43630 4.47174 4.53047 4.54685 4.58954 4.61479 4.62898 4.71786 4.75127 4.81478 4.84859 4.88557 4.93082 4.96707 5.01994 5.04959 5.07986 5.09563 5.12668 5.18551 5.20477 5.24256 5.31350 5.31672 5.38659 5.52846 5.53995 5.70744 6.23753 6.31282 6.53767 7.29994 7.37632 8.10896 8.36902 9.33462 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.005796 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.034950 B = 4830.151139 C = 7309.166783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.404 6.404 3 C 0.071 3.929 4 C -0.099 4.099 5 C -0.071 4.071 6 C 0.525 3.475 7 O -0.587 6.587 8 N -0.590 5.590 9 C 0.066 3.934 10 C 0.169 3.831 11 H 0.061 0.939 12 C 0.149 3.851 13 N -0.736 5.736 14 C -0.247 4.247 15 H 0.072 0.928 16 C -0.062 4.062 17 N -0.949 5.949 18 Si 0.965 3.035 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.273 1.273 22 C -0.162 4.162 23 C -0.173 4.173 24 C -0.166 4.166 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.124 4.124 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.042 0.958 41 H 0.369 0.631 42 H 0.247 0.753 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.048 0.952 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.040 0.960 52 H 0.089 0.911 53 H 0.065 0.935 54 H 0.101 0.899 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.453 3.481 8.791 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.323 6.323 3 C -0.006 4.006 4 C -0.136 4.136 5 C -0.074 4.074 6 C 0.314 3.686 7 O -0.468 6.468 8 N -0.321 5.321 9 C -0.075 4.075 10 C 0.065 3.935 11 H 0.079 0.921 12 C 0.022 3.978 13 N -0.378 5.378 14 C -0.379 4.379 15 H 0.090 0.910 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.794 3.206 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.198 1.198 22 C -0.181 4.181 23 C -0.211 4.211 24 C -0.203 4.203 25 C -0.144 4.144 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.161 4.161 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.201 0.799 42 H 0.056 0.944 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.136 0.864 48 H 0.067 0.933 49 H 0.114 0.886 50 H 0.102 0.898 51 H 0.059 0.941 52 H 0.107 0.893 53 H 0.084 0.916 54 H 0.119 0.881 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.100 3.720 8.579 19.490 hybrid contribution -1.923 -0.232 -0.644 2.041 sum 15.177 3.488 7.936 17.478 Atomic orbital electron populations 1.22765 0.80401 1.02924 1.00195 1.87701 1.20728 1.28431 1.95449 1.22445 0.94991 0.84226 0.98941 1.21699 0.92184 0.95134 1.04593 1.21529 0.99114 0.94636 0.92127 1.20949 0.79120 0.82569 0.85914 1.90635 1.35462 1.33372 1.87286 1.47599 1.47400 1.30725 1.06340 1.22355 0.93637 0.87578 1.03971 1.20531 0.95633 0.93295 0.84089 0.92125 1.21195 0.88614 0.93791 0.94241 1.42417 1.30184 1.42494 1.22700 1.19481 0.99386 1.11867 1.07167 0.91039 1.25473 0.97908 1.02981 0.99246 1.69856 1.20970 1.45045 1.23978 0.85280 0.77327 0.79185 0.78770 1.21474 1.22600 1.19799 1.22441 0.98273 1.05068 0.92330 1.23013 1.02474 0.95104 1.00479 1.23181 1.01715 0.97373 0.97984 1.22490 0.98809 0.97023 0.96054 1.22322 0.94744 0.97244 1.01661 1.22125 0.96761 0.95928 1.00531 1.22700 0.89918 1.00849 1.02665 0.88757 0.93156 0.95113 0.92674 0.97058 0.90886 0.87295 0.89250 0.89332 0.92130 0.96427 0.93993 0.79933 0.94397 0.86501 0.90193 0.86639 0.89130 0.86370 0.93329 0.88580 0.89820 0.94105 0.89268 0.91580 0.88062 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.26 11.02 113.37 1.25 2.51 16 2 O -0.40 -16.33 10.70 -148.98 -1.59 -17.92 16 3 C 0.07 2.67 5.48 71.98 0.39 3.07 16 4 C -0.10 -2.91 4.28 30.60 0.13 -2.78 16 5 C -0.07 -1.92 0.27 -51.86 -0.01 -1.93 16 6 C 0.52 18.90 5.32 87.66 0.47 19.36 16 7 O -0.59 -26.59 15.03 -3.05 -0.05 -26.64 16 8 N -0.59 -19.52 2.37 -822.58 -1.95 -21.47 16 9 C 0.07 1.72 8.07 127.77 1.03 2.75 16 10 C 0.17 6.04 2.50 44.99 0.11 6.16 16 11 H 0.06 2.67 6.91 -2.38 -0.02 2.65 16 12 C 0.15 6.10 3.99 86.38 0.34 6.45 16 13 N -0.74 -38.74 5.42 -343.46 -1.86 -40.60 16 14 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 15 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 16 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 17 N -0.95 -58.41 12.77 21.65 0.28 -58.13 16 18 Si 0.96 47.09 29.56 68.60 2.03 49.11 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C -0.16 -4.24 5.62 -10.77 -0.06 -4.30 16 23 C -0.17 -4.10 9.96 30.59 0.30 -3.80 16 24 C -0.17 -3.70 9.50 30.62 0.29 -3.41 16 25 C -0.11 -2.72 4.33 31.88 0.14 -2.59 16 26 C -0.12 -2.64 6.61 31.67 0.21 -2.43 16 27 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 28 C -0.12 -2.28 4.85 31.32 0.15 -2.13 16 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.03 1.40 7.76 -2.39 -0.02 1.38 16 32 H 0.06 1.87 7.21 -2.39 -0.02 1.85 16 33 H 0.01 0.54 7.39 -2.38 -0.02 0.52 16 34 H 0.07 2.36 5.47 -2.38 -0.01 2.35 16 35 H 0.11 2.49 8.00 -2.39 -0.02 2.47 16 36 H 0.09 1.65 6.78 -2.39 -0.02 1.63 16 37 H 0.09 2.20 3.49 -2.39 -0.01 2.19 16 38 H 0.06 1.78 6.29 -2.39 -0.02 1.76 16 39 H 0.02 0.76 7.33 -2.39 -0.02 0.74 16 40 H 0.04 1.62 5.65 -2.39 -0.01 1.61 16 41 H 0.37 21.67 7.56 -92.71 -0.70 20.97 16 42 H 0.25 14.81 8.24 -92.71 -0.76 14.05 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.08 2.17 7.95 -2.39 -0.02 2.15 16 45 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 2.33 5.82 -2.39 -0.01 2.31 16 47 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 48 H 0.05 1.58 7.17 -2.39 -0.02 1.56 16 49 H 0.10 1.99 8.06 -2.39 -0.02 1.97 16 50 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 53 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.10 1.39 7.74 -2.39 -0.02 1.37 16 55 H 0.09 1.55 4.35 -2.39 -0.01 1.54 16 Total: -1.00 -74.18 411.49 3.31 -70.87 By element: Atomic # 1 Polarization: 45.70 SS G_CDS: 0.19 Total: 45.89 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 6.27 Total: -1.11 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -3.53 Total: -120.20 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.64 Total: -44.56 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -74.18 3.31 -70.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331363195.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.505 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds