Wall clock time and date at job start Tue Mar 31 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99883 * 2 1 4 4 C 1.52992 * 109.47400 * 270.00279 * 3 2 1 5 5 H 1.09001 * 109.47183 * 60.00753 * 4 3 2 6 6 O 1.42893 * 109.47204 * 299.99956 * 4 3 2 7 7 C 1.53005 * 109.47152 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47161 * 184.99876 * 7 4 3 9 9 C 1.36933 * 119.99594 * 180.02562 * 8 7 4 10 10 H 1.07993 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.38819 * 119.99506 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99546 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48490 * 109.47109 * 269.99621 * 13 11 9 15 15 H 1.48499 * 109.47166 * 29.99824 * 13 11 9 16 16 H 1.48503 * 109.46979 * 149.99800 * 13 11 9 17 17 C 1.34769 * 119.99917 * 180.02562 * 2 1 3 18 18 O 1.21282 * 120.00161 * 173.21752 * 17 2 1 19 19 C 1.50706 * 120.00138 * 353.21994 * 17 2 1 20 20 H 1.08998 * 109.47179 * 49.11835 * 19 17 2 21 21 C 1.52999 * 109.46925 * 169.12192 * 19 17 2 22 22 C 1.53004 * 109.46621 * 179.97438 * 21 19 17 23 23 C 1.52993 * 109.47334 * 299.99841 * 22 21 19 24 24 H 1.09005 * 109.47801 * 300.00178 * 23 22 21 25 25 C 1.53004 * 109.47334 * 180.02562 * 23 22 21 26 26 C 1.53777 * 113.61430 * 157.49509 * 25 23 22 27 27 C 1.53779 * 87.08301 * 220.01976 * 26 25 23 28 28 C 1.53777 * 87.07814 * 25.43606 * 27 26 25 29 29 C 1.53000 * 109.47309 * 60.00122 * 23 22 21 30 30 C 1.53003 * 109.47192 * 300.00123 * 29 23 22 31 31 H 1.09000 * 109.47284 * 89.57677 * 1 2 3 32 32 H 1.09003 * 109.47185 * 209.57692 * 1 2 3 33 33 H 1.09002 * 109.46973 * 329.57829 * 1 2 3 34 34 H 1.09002 * 109.47108 * 150.00001 * 3 2 1 35 35 H 1.09008 * 109.47048 * 30.00366 * 3 2 1 36 36 H 0.96700 * 114.00039 * 300.00191 * 6 4 3 37 37 H 1.08999 * 109.46733 * 65.00200 * 7 4 3 38 38 H 1.09000 * 109.47369 * 305.00092 * 7 4 3 39 39 H 0.96992 * 119.99974 * 0.02562 * 8 7 4 40 40 H 0.97004 * 119.99462 * 180.02562 * 12 11 9 41 41 H 1.08994 * 109.47329 * 299.99656 * 21 19 17 42 42 H 1.08996 * 109.47222 * 60.00563 * 21 19 17 43 43 H 1.08994 * 109.47208 * 60.00359 * 22 21 19 44 44 H 1.09007 * 109.46825 * 179.97438 * 22 21 19 45 45 H 1.08993 * 112.85136 * 288.80818 * 25 23 22 46 46 H 1.08998 * 113.61766 * 334.57346 * 26 25 23 47 47 H 1.09004 * 113.61308 * 105.47710 * 26 25 23 48 48 H 1.09001 * 113.61840 * 270.88596 * 27 26 25 49 49 H 1.09001 * 113.68737 * 139.99266 * 27 26 25 50 50 H 1.09005 * 113.61630 * 220.01652 * 28 27 26 51 51 H 1.09001 * 113.61823 * 89.11431 * 28 27 26 52 52 H 1.08998 * 109.47110 * 60.00054 * 29 23 22 53 53 H 1.09000 * 109.47159 * 179.97438 * 29 23 22 54 54 H 1.08998 * 109.47037 * 299.99976 * 30 29 23 55 55 H 1.08997 * 109.47386 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.5000 1.8410 -1.9562 6 8 3.2247 0.7147 -2.1161 7 6 3.2169 3.0359 -1.4423 8 7 3.3568 3.5190 -2.8183 9 6 4.0110 4.6959 -3.0675 10 1 4.4242 5.2676 -2.2498 11 6 4.1440 5.1534 -4.3713 12 7 4.7733 6.2843 -4.6109 13 14 3.4299 4.1640 -5.7857 14 1 4.4483 3.2042 -6.2822 15 1 2.2351 3.4185 -5.3147 16 1 3.0385 5.0830 -6.8847 17 6 2.1389 -1.1671 -0.0005 18 8 3.3453 -1.1708 -0.1246 19 6 1.3932 -2.4678 0.1530 20 1 0.5536 -2.4895 -0.5417 21 6 2.3356 -3.6346 -0.1494 22 6 1.5788 -4.9551 0.0071 23 6 1.0585 -5.0780 1.4406 24 1 1.8983 -5.0561 2.1352 25 6 0.3022 -6.3987 1.5973 26 6 0.2137 -6.8891 3.0521 27 6 0.4583 -8.3060 2.5067 28 6 1.1649 -7.6399 1.3143 29 6 0.1162 -3.9112 1.7430 30 6 0.8730 -2.5906 1.5866 31 1 -0.3634 0.0076 -1.0276 32 1 -0.3634 -0.8938 0.5073 33 1 -0.3633 0.8862 0.5204 34 1 3.1499 1.1384 0.5138 35 1 1.6084 2.0284 0.5139 36 1 4.0872 0.5462 -1.7126 37 1 4.2052 2.8852 -1.0079 38 1 2.6692 3.7712 -0.8530 39 1 2.9860 3.0053 -3.5527 40 1 4.8659 6.6042 -5.5220 41 1 2.7066 -3.5468 -1.1705 42 1 3.1752 -3.6130 0.5454 43 1 0.7390 -4.9770 -0.6873 44 1 2.2500 -5.7864 -0.2087 45 1 -0.6542 -6.4034 1.0746 46 1 1.0194 -6.5204 3.6869 47 1 -0.7721 -6.7572 3.4981 48 1 -0.4561 -8.8327 2.2337 49 1 1.1228 -8.9059 3.1285 50 1 0.9471 -8.1140 0.3572 51 1 2.2307 -7.4765 1.4740 52 1 -0.7237 -3.9330 1.0486 53 1 -0.2548 -3.9990 2.7642 54 1 1.7128 -2.5687 2.2810 55 1 0.2016 -1.7594 1.8016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332523852.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:13 Heat of formation + Delta-G solvation = -97.327229 kcal Electronic energy + Delta-G solvation = -30343.302079 eV Core-core repulsion = 26379.263968 eV Total energy + Delta-G solvation = -3964.038111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52813 -40.27219 -38.89453 -37.63382 -36.46981 -35.93486 -33.51657 -32.54003 -31.72855 -30.92167 -28.07852 -27.35248 -26.47687 -25.98040 -24.27115 -23.39676 -22.98846 -22.49264 -20.84597 -20.26702 -19.89814 -19.82347 -18.13182 -17.73682 -17.03788 -16.73535 -16.64137 -16.38109 -16.12767 -15.91485 -15.48285 -15.23957 -15.10072 -14.89000 -14.74323 -14.29140 -14.18707 -13.91230 -13.74654 -13.66168 -13.36518 -13.25913 -13.23236 -13.20638 -12.92233 -12.84191 -12.67109 -12.54694 -12.29025 -12.26624 -11.98290 -11.93201 -11.92886 -11.87503 -11.36762 -11.32116 -11.25860 -11.16252 -11.05241 -10.81951 -10.67647 -10.39612 -9.51989 -9.34553 -8.07154 -5.40048 1.34223 1.38253 1.44788 1.70573 2.05699 2.44443 3.23555 3.37163 3.51098 3.62277 3.66755 3.70787 3.87719 3.90017 3.91910 3.98536 4.08658 4.13049 4.22634 4.30239 4.31498 4.38268 4.44380 4.50031 4.51752 4.58736 4.62397 4.68196 4.68947 4.74318 4.85528 4.87980 4.93166 4.93911 4.94663 4.99514 5.09964 5.15884 5.18120 5.18881 5.19603 5.23022 5.28965 5.29595 5.46781 5.49019 5.56194 5.59068 5.70129 5.76387 6.16904 6.45665 6.75576 7.03445 7.27681 7.80063 7.98617 9.14117 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.001942 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.486174 B =14416.215887 C =14805.518339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.610 5.610 3 C 0.094 3.906 4 C 0.093 3.907 5 H 0.096 0.904 6 O -0.566 6.566 7 C 0.126 3.874 8 N -0.754 5.754 9 C -0.238 4.238 10 H 0.059 0.941 11 C -0.061 4.061 12 N -0.980 5.980 13 Si 0.957 3.043 14 H -0.284 1.284 15 H -0.257 1.257 16 H -0.290 1.290 17 C 0.512 3.488 18 O -0.576 6.576 19 C -0.096 4.096 20 H 0.107 0.893 21 C -0.096 4.096 22 C -0.105 4.105 23 C -0.074 4.074 24 H 0.060 0.940 25 C -0.100 4.100 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.142 4.142 29 C -0.104 4.104 30 C -0.106 4.106 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.378 0.622 37 H 0.024 0.976 38 H 0.046 0.954 39 H 0.365 0.635 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.076 0.924 54 H 0.053 0.947 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 -30.387 18.638 39.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.342 5.342 3 C -0.030 4.030 4 C 0.032 3.968 5 H 0.114 0.886 6 O -0.373 6.373 7 C -0.001 4.001 8 N -0.400 5.400 9 C -0.368 4.368 10 H 0.077 0.923 11 C -0.253 4.253 12 N -0.631 5.631 13 Si 0.784 3.216 14 H -0.211 1.211 15 H -0.182 1.182 16 H -0.216 1.216 17 C 0.302 3.698 18 O -0.455 6.455 19 C -0.117 4.117 20 H 0.125 0.875 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.093 4.093 24 H 0.078 0.922 25 C -0.118 4.118 26 C -0.173 4.173 27 C -0.183 4.183 28 C -0.179 4.179 29 C -0.142 4.142 30 C -0.144 4.144 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.226 0.774 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.095 0.905 53 H 0.095 0.905 54 H 0.072 0.928 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.445 -30.213 18.274 39.384 hybrid contribution 0.885 0.275 -0.925 1.310 sum -16.560 -29.938 17.349 38.360 Atomic orbital electron populations 1.22272 0.77322 1.05509 1.02833 1.47798 1.08217 1.05014 1.73145 1.22050 0.98839 0.86386 0.95722 1.22471 0.94470 0.85988 0.93857 0.88627 1.86469 1.33730 1.59390 1.57680 1.21451 0.97943 0.94774 0.85972 1.42614 1.68605 1.24485 1.04278 1.19074 1.26955 0.97598 0.93217 0.92260 1.25469 1.01541 0.98413 0.99852 1.69876 1.49244 1.23644 1.20318 0.85384 0.78979 0.77905 0.79292 1.21088 1.18215 1.21625 1.21266 0.87626 0.86310 0.74631 1.90627 1.16675 1.87693 1.50496 1.21338 0.99126 0.90532 1.00726 0.87482 1.21283 0.97442 0.93902 1.00836 1.21513 0.99814 0.95628 0.97278 1.21139 0.97651 0.94353 0.96116 0.92151 1.22557 0.99184 0.92998 0.97065 1.22943 1.02062 0.96158 0.96165 1.22838 1.00878 0.96629 0.97938 1.22946 0.99250 0.97090 0.98623 1.21525 0.97812 0.92108 1.02728 1.21590 1.00298 0.99701 0.92774 0.92616 0.88168 0.89033 0.90780 0.86693 0.77409 0.95785 0.93592 0.80139 0.93232 0.93553 0.93043 0.91152 0.91803 0.88725 0.90524 0.91084 0.89843 0.91770 0.91631 0.90753 0.90496 0.90547 0.92791 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 9.94 127.77 1.27 2.01 16 2 N -0.61 -12.43 2.83 -846.75 -2.39 -14.83 16 3 C 0.09 2.19 5.17 86.38 0.45 2.64 16 4 C 0.09 2.87 3.27 30.59 0.10 2.97 16 5 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 6 O -0.57 -20.46 11.95 -134.64 -1.61 -22.06 16 7 C 0.13 4.82 5.90 86.38 0.51 5.33 16 8 N -0.75 -37.17 5.35 -343.44 -1.84 -39.01 16 9 C -0.24 -14.10 10.47 84.04 0.88 -13.22 16 10 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 11 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 12 N -0.98 -64.29 13.97 21.65 0.30 -63.99 16 13 Si 0.96 48.09 27.74 68.60 1.90 49.99 16 14 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.26 -11.92 6.52 99.48 0.65 -11.28 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 C 0.51 12.36 6.51 87.66 0.57 12.93 16 18 O -0.58 -18.82 13.99 11.31 0.16 -18.67 16 19 C -0.10 -1.58 1.68 -11.54 -0.02 -1.60 16 20 H 0.11 1.44 7.45 -2.39 -0.02 1.42 16 21 C -0.10 -1.81 4.56 30.60 0.14 -1.67 16 22 C -0.10 -1.36 5.00 30.59 0.15 -1.21 16 23 C -0.07 -0.77 1.94 -10.79 -0.02 -0.79 16 24 H 0.06 0.77 7.94 -2.38 -0.02 0.75 16 25 C -0.10 -0.87 3.13 -10.27 -0.03 -0.91 16 26 C -0.14 -1.15 7.63 31.12 0.24 -0.91 16 27 C -0.15 -1.27 8.08 31.12 0.25 -1.02 16 28 C -0.14 -1.39 6.68 31.12 0.21 -1.18 16 29 C -0.10 -0.87 5.20 30.60 0.16 -0.71 16 30 C -0.11 -1.22 4.86 30.60 0.15 -1.08 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.74 4.41 -2.39 -0.01 0.73 16 33 H 0.09 0.78 7.90 -2.39 -0.02 0.76 16 34 H 0.07 1.93 7.53 -2.39 -0.02 1.92 16 35 H 0.12 2.01 7.90 -2.38 -0.02 1.99 16 36 H 0.38 13.39 8.27 -74.06 -0.61 12.78 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.37 17.86 5.53 -92.71 -0.51 17.35 16 40 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.15 7.98 -2.39 -0.02 1.13 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.86 7.45 -2.38 -0.02 0.84 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.71 7.96 -2.39 -0.02 0.69 16 47 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 52 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.09 0.74 5.88 -2.39 -0.01 0.72 16 Total: -1.00 -76.62 416.72 1.67 -74.95 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.32 Total: 35.29 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.47 Total: -1.67 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -3.93 Total: -117.83 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.45 Total: -40.73 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.90 Total: 49.99 kcal Total: -76.62 1.67 -74.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332523852.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.379 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds