Wall clock time and date at job start Tue Mar 31 2020 22:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99917 * 2 1 4 4 C 1.53001 * 109.47309 * 359.97438 * 3 2 1 5 5 C 1.50706 * 109.46935 * 60.00600 * 4 3 2 6 6 O 1.21282 * 119.99899 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99861 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00379 * 359.97438 * 7 5 4 9 9 C 1.46504 * 119.99869 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.46874 * 270.00201 * 9 7 5 11 11 H 1.08993 * 109.47016 * 60.00382 * 10 9 7 12 12 O 1.42894 * 109.46744 * 299.99413 * 10 9 7 13 13 C 1.53005 * 109.46443 * 179.97438 * 10 9 7 14 14 N 1.46506 * 109.46712 * 184.99776 * 13 10 9 15 15 C 1.46502 * 119.99808 * 270.00217 * 14 13 10 16 16 C 1.36935 * 119.99808 * 89.99933 * 14 13 10 17 17 H 1.08001 * 120.00216 * 336.83888 * 16 14 13 18 18 C 1.38818 * 119.99552 * 156.56655 * 16 14 13 19 19 N 1.31622 * 119.99553 * 156.61090 * 18 16 14 20 20 Si 1.86795 * 120.00086 * 336.60459 * 18 16 14 21 21 H 1.48498 * 109.47017 * 84.94520 * 20 18 16 22 22 H 1.48501 * 109.47478 * 204.94415 * 20 18 16 23 23 H 1.48506 * 109.47174 * 324.94714 * 20 18 16 24 24 C 1.53000 * 109.47407 * 119.99562 * 3 2 1 25 25 C 1.53006 * 109.46748 * 59.99666 * 24 3 2 26 26 C 1.53000 * 109.47227 * 60.00408 * 25 24 3 27 27 C 1.52998 * 109.46845 * 299.99861 * 26 25 24 28 28 C 1.53001 * 109.47569 * 60.00190 * 27 26 25 29 29 H 1.08001 * 120.00360 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99868 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99868 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47559 * 300.00040 * 4 3 2 33 33 H 1.09007 * 109.46951 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47590 * 270.00330 * 8 7 5 35 35 H 1.09008 * 109.46920 * 30.00310 * 8 7 5 36 36 H 1.08998 * 109.47547 * 149.99824 * 8 7 5 37 37 H 1.08991 * 109.47131 * 149.99799 * 9 7 5 38 38 H 1.09006 * 109.46937 * 30.00077 * 9 7 5 39 39 H 0.96700 * 114.00433 * 300.00313 * 12 10 9 40 40 H 1.09001 * 109.47344 * 65.00022 * 13 10 9 41 41 H 1.09000 * 109.47336 * 304.99442 * 13 10 9 42 42 H 1.09004 * 109.46904 * 274.76890 * 15 14 13 43 43 H 1.09000 * 109.47324 * 34.76941 * 15 14 13 44 44 H 1.09005 * 109.46821 * 154.77299 * 15 14 13 45 45 H 0.96997 * 119.99113 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.47451 * 179.97438 * 24 3 2 47 47 H 1.09001 * 109.47027 * 299.99963 * 24 3 2 48 48 H 1.08993 * 109.47196 * 299.99963 * 25 24 3 49 49 H 1.09004 * 109.46794 * 179.97438 * 25 24 3 50 50 H 1.08997 * 109.47148 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.47101 * 59.99487 * 26 25 24 52 52 H 1.09001 * 109.46966 * 299.99709 * 27 26 25 53 53 H 1.09004 * 109.47028 * 180.02562 * 27 26 25 54 54 H 1.09004 * 109.47269 * 180.02562 * 28 27 26 55 55 H 1.08993 * 109.47066 * 59.99941 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 0.2025 2.3885 1.2296 6 8 0.3638 1.4899 2.0280 7 7 -0.7519 3.3160 1.4426 8 6 -0.9463 4.4017 0.4786 9 6 -1.5949 3.2384 2.6383 10 6 -2.8378 2.4002 2.3325 11 1 -2.5348 1.3961 2.0358 12 8 -3.5734 3.0095 1.2698 13 6 -3.7178 2.3186 3.5815 14 7 -4.8460 1.4196 3.3260 15 6 -6.0966 1.9511 2.7785 16 6 -4.7315 0.0827 3.5989 17 1 -3.7559 -0.3790 3.6374 18 6 -5.8691 -0.6781 3.8316 19 7 -5.8409 -1.9799 3.6394 20 14 -7.4399 0.1458 4.4176 21 1 -8.1951 0.6606 3.2472 22 1 -8.2735 -0.8416 5.1493 23 1 -7.0997 1.2734 5.3221 24 6 2.9431 1.3862 1.2493 25 6 3.9373 0.2232 1.2494 26 6 4.8170 0.3042 0.0002 27 6 3.9374 0.2231 -1.2491 28 6 2.9432 1.3860 -1.2493 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 0.4429 2.4101 -0.8908 33 1 1.6143 3.4120 -0.0011 34 1 -0.3182 5.2489 0.7537 35 1 -0.6733 4.0557 -0.5184 36 1 -1.9923 4.7085 0.4828 37 1 -1.8977 4.2424 2.9351 38 1 -1.0336 2.7736 3.4490 39 1 -3.8755 3.9072 1.4647 40 1 -4.0932 3.3121 3.8269 41 1 -3.1300 1.9359 4.4158 42 1 -6.7189 2.3256 3.5913 43 1 -5.8742 2.7638 2.0870 44 1 -6.6273 1.1592 2.2498 45 1 -6.6357 -2.5114 3.8024 46 1 3.4884 2.3300 1.2491 47 1 2.3163 1.3285 2.1392 48 1 3.3923 -0.7207 1.2494 49 1 4.5642 0.2813 2.1392 50 1 5.5256 -0.5241 0.0005 51 1 5.3620 1.2482 0.0002 52 1 3.3925 -0.7209 -1.2490 53 1 4.5642 0.2803 -2.1391 54 1 2.3163 1.3280 -2.1391 55 1 3.4882 2.3299 -1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332665742.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:16 Heat of formation + Delta-G solvation = -63.661882 kcal Electronic energy + Delta-G solvation = -31795.581320 eV Core-core repulsion = 27833.003048 eV Total energy + Delta-G solvation = -3962.578272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84740 -39.87018 -38.77417 -36.98964 -35.91129 -34.93471 -33.70664 -32.05024 -31.57373 -31.27008 -28.98199 -28.07762 -27.73963 -26.38931 -23.97276 -23.49781 -23.13204 -22.28062 -21.81138 -20.06178 -18.94540 -18.84079 -17.98803 -17.62552 -17.15448 -17.14092 -16.59545 -16.47276 -16.28630 -15.73488 -15.52852 -15.23530 -15.07356 -14.83061 -14.61885 -14.34606 -14.28708 -14.14835 -13.98164 -13.72013 -13.32604 -13.20977 -13.15596 -13.09515 -12.73964 -12.72334 -12.61482 -12.36540 -12.33232 -12.19263 -12.07818 -11.99690 -11.96464 -11.85897 -11.55230 -11.44259 -11.18644 -10.96177 -10.96060 -10.72746 -10.50306 -9.88979 -9.49331 -8.84848 -8.19488 -5.48184 1.30441 1.39435 1.49830 1.50460 1.75828 2.13562 2.41015 3.01425 3.34960 3.59362 3.61684 3.65933 3.79542 3.99679 4.07346 4.12418 4.18606 4.23737 4.30943 4.36223 4.43265 4.44658 4.49779 4.53198 4.58513 4.62888 4.65495 4.70633 4.71774 4.77418 4.81829 4.87224 4.89199 4.95946 4.96970 5.00236 5.02080 5.06606 5.20876 5.24315 5.27984 5.31025 5.33058 5.45687 5.58511 5.60705 5.69745 5.76780 5.80879 5.96657 6.08098 6.52085 6.90258 7.02519 7.36486 7.63161 7.95087 9.01243 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002872 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.992399 B = 9747.722616 C =10667.138957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.009 4.009 4 C -0.127 4.127 5 C 0.500 3.500 6 O -0.566 6.566 7 N -0.612 5.612 8 C 0.075 3.925 9 C 0.095 3.905 10 C 0.094 3.906 11 H 0.041 0.959 12 O -0.559 6.559 13 C 0.121 3.879 14 N -0.618 5.618 15 C 0.107 3.893 16 C -0.255 4.255 17 H 0.037 0.963 18 C -0.041 4.041 19 N -0.959 5.959 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.313 1.313 23 H -0.267 1.267 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.099 4.099 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.380 0.620 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.014 0.986 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.051 0.949 53 H 0.077 0.923 54 H 0.067 0.933 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.611 19.080 -11.467 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.142 4.142 3 C -0.009 4.009 4 C -0.167 4.167 5 C 0.290 3.710 6 O -0.446 6.446 7 N -0.345 5.345 8 C -0.067 4.067 9 C -0.029 4.029 10 C 0.031 3.969 11 H 0.059 0.941 12 O -0.365 6.365 13 C -0.005 4.005 14 N -0.341 5.341 15 C -0.037 4.037 16 C -0.385 4.385 17 H 0.055 0.945 18 C -0.235 4.235 19 N -0.606 5.606 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.242 1.242 23 H -0.192 1.192 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.228 0.772 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.070 0.930 53 H 0.095 0.905 54 H 0.086 0.914 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.726 17.953 -11.338 28.982 hybrid contribution -1.310 -0.510 1.007 1.730 sum 18.415 17.443 -10.331 27.388 Atomic orbital electron populations 1.23720 0.96879 1.00301 1.02844 1.22769 0.94602 0.98609 0.98247 1.19448 0.93899 0.90712 0.96848 1.21899 0.97654 1.01597 0.95539 1.21146 0.80900 0.80650 0.88305 1.90722 1.70201 1.34737 1.48919 1.47903 1.33963 1.28422 1.24175 1.22052 1.03740 0.88842 0.92032 1.22023 0.91008 1.01867 0.87989 1.22612 0.90496 0.95026 0.88718 0.94095 1.86627 1.74725 1.33948 1.41233 1.21606 0.88905 0.94528 0.95472 1.44080 1.12220 1.04248 1.73570 1.21414 0.87562 0.98457 0.96266 1.18769 0.93087 0.84493 1.42116 0.94499 1.25911 1.01583 0.95510 1.00492 1.70052 1.30734 1.07354 1.52414 0.85796 0.79500 0.76878 0.78810 1.19252 1.24197 1.19202 1.21720 0.96803 0.98736 0.97634 1.21528 0.97447 0.98219 0.98565 1.21514 0.97384 1.02374 0.93787 1.21555 0.97576 0.98407 0.98275 1.21543 0.96822 0.99797 0.95425 0.91246 0.89592 0.87683 0.87997 0.85998 0.90492 0.90363 0.89794 0.86575 0.91389 0.77176 0.89575 0.93399 0.96820 0.90439 0.95072 0.92978 0.91072 0.92276 0.93714 0.92263 0.91834 0.90916 0.93048 0.90467 0.91397 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.70 11.96 67.78 0.81 -5.89 16 2 C -0.12 -3.43 6.67 25.64 0.17 -3.26 16 3 C -0.01 -0.18 0.50 -52.93 -0.03 -0.20 16 4 C -0.13 -2.37 2.79 29.85 0.08 -2.29 16 5 C 0.50 13.40 5.15 87.66 0.45 13.85 16 6 O -0.57 -20.60 11.03 -3.04 -0.03 -20.63 16 7 N -0.61 -13.81 2.80 -846.75 -2.37 -16.17 16 8 C 0.08 0.98 9.98 127.77 1.28 2.25 16 9 C 0.10 2.40 5.10 86.38 0.44 2.84 16 10 C 0.09 3.18 3.48 30.60 0.11 3.29 16 11 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 12 O -0.56 -16.43 10.82 -148.98 -1.61 -18.04 16 13 C 0.12 4.52 5.35 86.38 0.46 4.98 16 14 N -0.62 -29.95 2.69 -726.89 -1.95 -31.91 16 15 C 0.11 4.58 8.18 127.77 1.05 5.63 16 16 C -0.25 -15.48 10.04 84.04 0.84 -14.64 16 17 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 18 C -0.04 -2.51 5.17 84.86 0.44 -2.07 16 19 N -0.96 -63.89 13.97 21.65 0.30 -63.59 16 20 Si 0.96 48.59 24.04 68.60 1.65 50.24 16 21 H -0.27 -12.50 6.37 99.48 0.63 -11.86 16 22 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 23 H -0.27 -12.80 6.90 99.48 0.69 -12.12 16 24 C -0.11 -2.44 4.43 30.60 0.14 -2.31 16 25 C -0.12 -2.42 5.69 30.60 0.17 -2.25 16 26 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 27 C -0.12 -1.76 5.69 30.59 0.17 -1.59 16 28 C -0.10 -1.42 4.72 30.60 0.14 -1.28 16 29 H 0.07 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.09 2.93 4.51 -2.91 -0.01 2.92 16 31 H 0.11 2.86 5.94 -2.91 -0.02 2.84 16 32 H 0.10 1.74 6.76 -2.39 -0.02 1.73 16 33 H 0.12 1.46 8.11 -2.38 -0.02 1.44 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.88 6.44 -2.38 -0.02 0.86 16 36 H 0.08 0.98 6.88 -2.39 -0.02 0.96 16 37 H 0.12 1.93 8.07 -2.39 -0.02 1.91 16 38 H 0.07 2.05 7.42 -2.38 -0.02 2.03 16 39 H 0.38 7.07 8.79 -74.06 -0.65 6.42 16 40 H 0.09 2.44 8.07 -2.39 -0.02 2.43 16 41 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 42 H 0.01 0.57 5.80 -2.38 -0.01 0.56 16 43 H 0.08 2.67 7.04 -2.39 -0.02 2.65 16 44 H 0.03 1.49 5.74 -2.38 -0.01 1.48 16 45 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 1.75 5.51 -2.39 -0.01 1.74 16 48 H 0.04 1.06 6.62 -2.39 -0.02 1.05 16 49 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.05 0.90 6.62 -2.39 -0.02 0.88 16 53 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 54 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 55 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -83.08 400.62 3.02 -80.06 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.12 Total: 24.46 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.91 Total: -4.42 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -4.02 Total: -111.67 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.64 Total: -38.67 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.65 Total: 50.24 kcal Total: -83.08 3.02 -80.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665742.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.401 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds