Wall clock time and date at job start Tue Mar 31 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00114 * 2 1 4 4 C 1.53000 * 109.47525 * 270.00362 * 3 2 1 5 5 O 1.42894 * 109.47161 * 64.99476 * 4 3 2 6 6 C 1.42900 * 114.00259 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47597 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47290 * 64.99734 * 7 6 5 9 9 C 1.36940 * 120.00297 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99410 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00254 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99699 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47491 * 89.99907 * 13 11 9 15 15 H 1.48502 * 109.46769 * 210.00072 * 13 11 9 16 16 H 1.48503 * 109.47145 * 329.99597 * 13 11 9 17 17 C 1.34780 * 119.99689 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99779 * 180.02562 * 17 2 1 19 19 C 1.50699 * 120.00155 * 359.97438 * 17 2 1 20 20 C 1.50223 * 117.30583 * 179.97438 * 19 17 2 21 21 H 1.09001 * 113.05165 * 359.17457 * 20 19 17 22 22 C 1.48769 * 129.35819 * 150.96865 * 20 19 17 23 23 C 1.53873 * 112.67324 * 133.86326 * 22 20 19 24 24 C 1.54374 * 109.20939 * 296.18042 * 23 22 20 25 25 C 1.51241 * 111.07916 * 100.93863 * 24 23 22 26 26 C 1.49148 * 120.88509 * 324.70225 * 25 24 23 27 27 C 1.54815 * 109.54253 * 277.99545 * 26 25 24 28 28 C 1.50916 * 117.30161 * 109.30040 * 19 17 2 29 29 H 1.09000 * 117.53495 * 215.18850 * 28 19 17 30 30 H 1.08995 * 109.47130 * 270.00176 * 1 2 3 31 31 H 1.09005 * 109.46960 * 29.99667 * 1 2 3 32 32 H 1.08996 * 109.47358 * 149.99355 * 1 2 3 33 33 H 1.09002 * 109.46945 * 30.00536 * 3 2 1 34 34 H 1.09002 * 109.47201 * 150.00165 * 3 2 1 35 35 H 1.08994 * 109.47272 * 185.00403 * 4 3 2 36 36 H 1.09002 * 109.46981 * 304.99844 * 4 3 2 37 37 H 1.09000 * 109.46910 * 300.00590 * 6 5 4 38 38 H 1.09005 * 109.46843 * 60.00412 * 6 5 4 39 39 H 1.09001 * 109.47596 * 185.00023 * 7 6 5 40 40 H 1.09003 * 109.46769 * 305.00268 * 7 6 5 41 41 H 0.97000 * 120.00227 * 0.02562 * 8 7 6 42 42 H 0.96998 * 119.99381 * 180.02562 * 12 11 9 43 43 H 1.08991 * 115.33460 * 324.65676 * 19 17 2 44 44 H 1.08997 * 108.87545 * 254.80280 * 22 20 19 45 45 H 1.09002 * 108.86989 * 13.23572 * 22 20 19 46 46 H 1.09002 * 109.55932 * 176.22460 * 23 22 20 47 47 H 1.09004 * 109.49728 * 56.09804 * 23 22 20 48 48 H 1.08995 * 109.15771 * 340.52080 * 24 23 22 49 49 H 1.09002 * 109.11225 * 221.31452 * 24 23 22 50 50 H 1.08994 * 107.13171 * 201.77980 * 25 24 23 51 51 H 1.09003 * 107.09631 * 87.59692 * 25 24 23 52 52 H 1.09008 * 109.46016 * 157.97422 * 26 25 24 53 53 H 1.09003 * 109.44753 * 38.01240 * 26 25 24 54 54 H 1.08992 * 110.86023 * 298.16652 * 27 26 25 55 55 H 1.09006 * 110.89700 * 174.71304 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 8 1.2061 1.9936 -2.0813 6 6 1.3324 2.4177 -3.4401 7 6 -0.0565 2.6919 -4.0201 8 7 -0.6652 3.8232 -3.3160 9 6 -1.9171 4.2540 -3.6657 10 1 -2.4559 3.7593 -4.4603 11 6 -2.4937 5.3263 -2.9989 12 7 -1.8367 5.9294 -2.0308 13 14 -4.2017 5.9133 -3.4754 14 1 -5.2170 5.1876 -2.6708 15 1 -4.3143 7.3712 -3.2160 16 1 -4.4316 5.6481 -4.9184 17 6 2.1388 -1.1673 -0.0005 18 8 3.3517 -1.1673 -0.0001 19 6 1.3853 -2.4723 -0.0005 20 6 2.1967 -3.7366 -0.0017 21 1 3.2712 -3.5541 -0.0169 22 6 1.8603 -5.0741 0.5562 23 6 2.1772 -6.2206 -0.4199 24 6 1.2900 -6.0788 -1.6753 25 6 2.0640 -5.4681 -2.8221 26 6 3.1003 -4.4240 -2.5764 27 6 2.4177 -3.0430 -2.4227 28 6 1.4225 -3.2931 -1.2664 29 1 0.5251 -3.8524 -1.5309 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1383 0.5138 35 1 3.0733 2.6064 -1.4437 36 1 2.9642 0.9132 -1.9816 37 1 1.9297 3.3285 -3.4823 38 1 1.8211 1.6354 -4.0209 39 1 0.0327 2.9292 -5.0802 40 1 -0.6825 1.8081 -3.8971 41 1 -0.1811 4.2677 -2.6026 42 1 -2.2397 6.6785 -1.5647 43 1 0.4565 -2.4746 0.5697 44 1 2.4267 -5.2255 1.4750 45 1 0.7964 -5.1003 0.7918 46 1 1.9752 -7.1769 0.0627 47 1 3.2272 -6.1729 -0.7086 48 1 0.4369 -5.4423 -1.4403 49 1 0.9302 -7.0642 -1.9712 50 1 1.3347 -5.0409 -3.5103 51 1 2.5521 -6.2867 -3.3512 52 1 3.7932 -4.3949 -3.4175 53 1 3.6467 -4.6626 -1.6639 54 1 1.8907 -2.7667 -3.3358 55 1 3.1449 -2.2780 -2.1501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333251760.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:39 Heat of formation + Delta-G solvation = -66.725707 kcal Electronic energy + Delta-G solvation = -30839.597867 eV Core-core repulsion = 26876.886738 eV Total energy + Delta-G solvation = -3962.711129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87308 -39.99380 -38.94097 -36.80701 -36.10280 -35.74632 -34.07410 -33.42034 -31.44399 -29.53135 -29.13136 -27.43560 -26.95821 -25.61857 -25.35007 -23.52027 -22.79156 -22.02885 -21.58564 -20.19386 -19.70811 -19.23114 -18.15987 -17.62685 -17.36188 -16.97560 -16.77941 -16.39107 -16.05336 -15.81537 -15.47098 -15.33950 -15.22484 -14.88328 -14.63633 -14.48298 -14.33958 -14.13002 -13.80378 -13.61674 -13.39353 -13.32070 -13.17213 -12.98835 -12.95019 -12.74997 -12.70471 -12.54640 -12.26611 -12.13981 -12.12750 -11.91948 -11.90649 -11.69220 -11.68195 -11.33317 -11.04129 -10.95325 -10.92870 -10.65636 -10.51399 -10.20678 -9.67223 -8.96860 -7.91569 -5.20170 1.46257 1.48850 1.50812 1.59147 1.93420 2.58309 2.70823 2.79008 3.41791 3.42780 3.67114 3.72646 3.93498 3.95607 3.97848 4.04578 4.09821 4.13948 4.22393 4.27383 4.30207 4.31664 4.37223 4.45564 4.46122 4.52275 4.54370 4.63258 4.64178 4.68251 4.71828 4.81074 4.84551 4.92081 4.98607 5.01294 5.03323 5.07345 5.11756 5.14076 5.14889 5.18706 5.27027 5.38427 5.44678 5.50129 5.50788 5.51934 5.60941 5.64640 6.26368 6.30816 6.42210 7.13161 7.36507 8.12169 8.36839 9.32049 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.002348 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.641647 B =11924.478001 C =12319.616953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.119 3.881 4 C 0.050 3.950 5 O -0.388 6.388 6 C 0.067 3.933 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.244 4.244 10 H 0.076 0.924 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.286 1.286 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.539 3.461 18 O -0.579 6.579 19 C -0.155 4.155 20 C -0.131 4.131 21 H 0.080 0.920 22 C -0.079 4.079 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.108 4.108 27 C -0.093 4.093 28 C -0.130 4.130 29 H 0.139 0.861 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.024 0.976 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.140 0.860 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.052 0.948 51 H 0.053 0.947 52 H 0.061 0.939 53 H 0.065 0.935 54 H 0.068 0.932 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -26.194 3.733 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C -0.004 4.004 4 C -0.028 4.028 5 O -0.308 6.308 6 C -0.010 4.010 7 C 0.027 3.973 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.213 1.213 15 H -0.223 1.223 16 H -0.194 1.194 17 C 0.329 3.671 18 O -0.460 6.460 19 C -0.176 4.176 20 C -0.150 4.150 21 H 0.099 0.901 22 C -0.117 4.117 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.149 4.149 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.158 0.842 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.079 0.921 53 H 0.084 0.916 54 H 0.087 0.913 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.127 -26.239 3.691 28.025 hybrid contribution -0.313 1.251 -0.013 1.290 sum 8.814 -24.988 3.678 26.751 Atomic orbital electron populations 1.21906 0.77681 1.04078 1.02397 1.47754 1.08171 1.05219 1.72144 1.21527 0.98558 0.85238 0.95037 1.22901 0.86568 0.99221 0.94126 1.87971 1.29453 1.87548 1.25812 1.22634 0.97132 0.98341 0.82863 1.20835 0.91822 0.89971 0.94705 1.42478 1.17293 1.36145 1.42345 1.19647 0.93577 1.10458 1.13903 0.90643 1.25569 1.02547 0.99541 0.99187 1.69837 1.39398 1.25568 1.27168 0.85134 0.79844 0.76697 0.78045 1.21337 1.22278 1.19414 1.20157 0.87023 0.85343 0.74600 1.90632 1.15361 1.87834 1.52201 1.21646 1.02350 0.89296 1.04279 1.21141 0.97977 0.93412 1.02492 0.90126 1.20314 1.02098 0.90806 0.98472 1.21917 1.00138 0.97425 0.95358 1.21637 0.98374 1.00801 0.94527 1.20339 0.98163 0.97915 0.98927 1.21199 0.97878 0.93480 1.01991 1.21966 0.96721 0.97501 0.96884 1.23118 1.01395 1.01538 0.88804 0.84396 0.91159 0.91632 0.89639 0.89190 0.88407 0.91782 0.93938 0.93588 0.91232 0.94052 0.95802 0.79306 0.94095 0.84230 0.91824 0.91209 0.90396 0.92089 0.91433 0.91070 0.92923 0.92831 0.92079 0.91608 0.91326 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 9.83 127.77 1.26 3.15 16 2 N -0.60 -15.61 2.84 -846.75 -2.40 -18.01 16 3 C 0.12 3.19 5.81 86.38 0.50 3.69 16 4 C 0.05 1.42 6.28 71.98 0.45 1.88 16 5 O -0.39 -13.49 9.11 -148.98 -1.36 -14.85 16 6 C 0.07 2.25 6.07 71.98 0.44 2.68 16 7 C 0.15 6.22 6.65 86.38 0.57 6.80 16 8 N -0.74 -38.43 5.55 -343.46 -1.91 -40.34 16 9 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 12 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 13 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 C 0.54 14.33 6.71 87.66 0.59 14.92 16 18 O -0.58 -18.93 14.70 -3.05 -0.04 -18.98 16 19 C -0.15 -3.07 4.53 -13.11 -0.06 -3.13 16 20 C -0.13 -2.37 3.54 -12.43 -0.04 -2.42 16 21 H 0.08 1.91 6.45 -2.39 -0.02 1.89 16 22 C -0.08 -1.03 5.47 29.55 0.16 -0.87 16 23 C -0.11 -1.22 5.67 31.36 0.18 -1.04 16 24 C -0.12 -1.25 5.38 30.49 0.16 -1.08 16 25 C -0.12 -1.50 4.44 28.79 0.13 -1.37 16 26 C -0.11 -1.76 5.43 29.99 0.16 -1.60 16 27 C -0.09 -1.87 5.96 31.76 0.19 -1.68 16 28 C -0.13 -2.30 4.42 -10.33 -0.05 -2.34 16 29 H 0.14 1.97 5.47 -2.39 -0.01 1.96 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.93 7.12 -2.38 -0.02 1.91 16 32 H 0.08 1.68 6.66 -2.39 -0.02 1.66 16 33 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 34 H 0.10 2.53 7.42 -2.39 -0.02 2.51 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.38 20.97 7.67 -92.71 -0.71 20.26 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.14 2.18 7.30 -2.39 -0.02 2.16 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.77 8.06 -2.39 -0.02 0.75 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.76 6.33 -2.39 -0.02 0.75 16 48 H 0.07 0.72 5.22 -2.39 -0.01 0.71 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.05 0.70 7.84 -2.39 -0.02 0.68 16 51 H 0.05 0.64 8.12 -2.39 -0.02 0.62 16 52 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 53 H 0.07 1.15 4.60 -2.39 -0.01 1.14 16 54 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 55 H 0.05 1.20 6.63 -2.38 -0.02 1.19 16 Total: -1.00 -69.49 414.60 2.71 -66.78 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.16 Total: 36.02 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.95 Total: 0.70 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -4.03 Total: -117.93 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.40 Total: -33.83 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -69.49 2.71 -66.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333251760.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.058 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds