Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.53000 * 109.46992 * 269.72138 * 3 2 1 5 5 O 1.42901 * 109.46999 * 64.99670 * 4 3 2 6 6 C 1.42901 * 114.00194 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47542 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46887 * 64.99866 * 7 6 5 9 9 C 1.36939 * 119.99776 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00065 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99766 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00278 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99892 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47039 * 90.00241 * 13 11 9 15 15 H 1.48505 * 109.46864 * 210.00126 * 13 11 9 16 16 H 1.48496 * 109.46838 * 330.00159 * 13 11 9 17 17 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 18 18 O 1.21284 * 119.99754 * 180.27842 * 17 2 1 19 19 C 1.50696 * 120.00137 * 0.28058 * 17 2 1 20 20 C 1.50915 * 117.30823 * 249.61027 * 19 17 2 21 21 H 1.08997 * 117.53998 * 144.80928 * 20 19 17 22 22 C 1.54601 * 123.58248 * 345.89909 * 20 19 17 23 23 C 1.54824 * 102.35237 * 235.50106 * 22 20 19 24 24 C 1.49144 * 109.53983 * 303.57157 * 23 22 20 25 25 C 1.51246 * 120.88640 * 82.00823 * 24 23 22 26 26 C 1.54376 * 111.08229 * 35.29665 * 25 24 23 27 27 C 1.51978 * 108.41840 * 259.15574 * 26 25 24 28 28 C 1.48764 * 113.69404 * 64.70329 * 27 26 25 29 29 H 1.08995 * 112.25821 * 72.08957 * 28 27 26 30 30 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 31 31 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 32 32 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 33 33 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 34 34 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 35 35 H 1.08992 * 109.47261 * 184.99922 * 4 3 2 36 36 H 1.08998 * 109.46963 * 305.00287 * 4 3 2 37 37 H 1.09005 * 109.47031 * 300.00496 * 6 5 4 38 38 H 1.08996 * 109.47115 * 59.99818 * 6 5 4 39 39 H 1.08995 * 109.47381 * 184.99467 * 7 6 5 40 40 H 1.08998 * 109.47328 * 305.00513 * 7 6 5 41 41 H 0.96993 * 120.00127 * 0.02562 * 8 7 6 42 42 H 0.96997 * 120.00109 * 180.02562 * 12 11 9 43 43 H 1.09001 * 115.43111 * 34.41244 * 19 17 2 44 44 H 1.08999 * 110.86429 * 353.76787 * 22 20 19 45 45 H 1.09007 * 110.85743 * 117.24086 * 22 20 19 46 46 H 1.09000 * 109.46108 * 63.59339 * 23 22 20 47 47 H 1.09006 * 109.45764 * 183.55509 * 23 22 20 48 48 H 1.09000 * 107.13275 * 204.93340 * 24 23 22 49 49 H 1.08998 * 107.13458 * 319.07891 * 24 23 22 50 50 H 1.09000 * 109.15584 * 155.70795 * 25 24 23 51 51 H 1.08998 * 109.15923 * 274.88131 * 25 24 23 52 52 H 1.08994 * 109.52020 * 18.90157 * 26 25 24 53 53 H 1.08995 * 109.52339 * 139.02574 * 26 25 24 54 54 H 1.08998 * 108.64647 * 303.30631 * 27 26 25 55 55 H 1.09005 * 107.88464 * 185.55456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4586 1.7069 -1.4425 5 8 1.2148 1.9884 -2.0873 6 6 1.3468 2.4079 -3.4469 7 6 -0.0397 2.6808 -4.0335 8 7 -0.6506 3.8149 -3.3355 9 6 -1.9009 4.2450 -3.6916 10 1 -2.4368 3.7480 -4.4867 11 6 -2.4799 5.3191 -3.0299 12 7 -1.8270 5.9245 -2.0606 13 14 -4.1859 5.9054 -3.5152 14 1 -5.2048 5.1819 -2.7130 15 1 -4.2992 7.3640 -3.2600 16 1 -4.4097 5.6365 -4.9584 17 6 2.1388 -1.1672 0.0057 18 8 3.3517 -1.1672 0.0108 19 6 1.3854 -2.4723 0.0058 20 6 1.4384 -3.3024 1.2650 21 1 0.5444 -3.8636 1.5368 22 6 2.4493 -3.0573 2.4088 23 6 3.1369 -4.4379 2.5446 24 6 2.1062 -5.4857 2.7980 25 6 1.3178 -6.0910 1.6580 26 6 2.1879 -6.2232 0.3897 27 6 1.8471 -5.0769 -0.5482 28 6 2.1967 -3.7366 -0.0058 29 1 3.2728 -3.5638 0.0058 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6063 2.0296 0.5094 34 1 3.1478 1.1396 0.5181 35 1 3.0793 2.6028 -1.4434 36 1 2.9725 0.9082 -1.9774 37 1 1.9448 3.3184 -3.4898 38 1 1.8375 1.6236 -4.0232 39 1 0.0540 2.9147 -5.0939 40 1 -0.6666 1.7978 -3.9100 41 1 -0.1691 4.2614 -2.6217 42 1 -2.2318 6.6748 -1.5980 43 1 0.4504 -2.4730 -0.5545 44 1 3.1715 -2.2897 2.1308 45 1 1.9342 -2.7879 3.3309 46 1 3.6714 -4.6695 1.6233 47 1 3.8410 -4.4126 3.3763 48 1 2.6029 -6.3061 3.3159 49 1 1.3854 -5.0643 3.4987 50 1 0.9632 -7.0785 1.9530 51 1 0.4603 -5.4548 1.4387 52 1 3.2416 -6.1739 0.6641 53 1 1.9821 -7.1774 -0.0954 54 1 0.7778 -5.1045 -0.7580 55 1 2.3913 -5.2334 -1.4796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333251761.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = -66.137119 kcal Electronic energy + Delta-G solvation = -30475.669183 eV Core-core repulsion = 26512.983576 eV Total energy + Delta-G solvation = -3962.685606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91982 -40.03959 -38.94947 -36.81467 -36.11232 -35.76041 -34.17499 -33.42513 -31.44438 -29.54092 -29.13850 -27.44851 -26.92862 -25.63539 -25.36890 -23.50277 -22.79967 -22.01948 -21.59722 -20.20772 -19.72361 -19.23713 -18.15772 -17.63330 -17.30998 -17.08498 -16.79477 -16.32872 -16.08505 -15.82421 -15.47203 -15.32351 -15.23814 -14.88619 -14.68380 -14.43652 -14.34492 -14.14291 -13.81135 -13.61874 -13.40498 -13.32888 -13.18325 -13.03349 -12.96134 -12.76602 -12.70208 -12.51802 -12.24663 -12.13394 -12.12526 -11.92091 -11.90537 -11.69584 -11.68378 -11.32901 -11.02782 -10.95848 -10.93846 -10.66190 -10.52629 -10.20876 -9.68142 -8.97336 -7.91771 -5.20571 1.44359 1.48650 1.50723 1.59086 1.95062 2.58045 2.71863 2.76546 3.41071 3.42098 3.66839 3.72315 3.93525 3.95722 3.99078 4.04755 4.09342 4.13802 4.22295 4.28302 4.29897 4.32357 4.34584 4.44901 4.47067 4.51784 4.55047 4.63596 4.64397 4.69024 4.72010 4.79106 4.83852 4.92908 4.98358 5.02232 5.03549 5.04911 5.12618 5.13056 5.15582 5.19394 5.26772 5.38819 5.45267 5.50102 5.50362 5.51991 5.61788 5.65055 6.26131 6.30545 6.41177 7.12713 7.36148 8.11613 8.36503 9.31776 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002098 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.527828 B =13342.837030 C =13684.721268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.602 5.602 3 C 0.120 3.880 4 C 0.048 3.952 5 O -0.389 6.389 6 C 0.066 3.934 7 C 0.152 3.848 8 N -0.740 5.740 9 C -0.245 4.245 10 H 0.076 0.924 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.286 1.286 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.540 3.460 18 O -0.579 6.579 19 C -0.156 4.156 20 C -0.126 4.126 21 H 0.141 0.859 22 C -0.093 4.093 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.080 4.080 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.023 0.977 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.061 0.939 53 H 0.077 0.923 54 H 0.068 0.932 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.838 -26.105 9.106 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.333 5.333 3 C -0.003 4.003 4 C -0.030 4.030 5 O -0.309 6.309 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.094 0.906 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.194 1.194 17 C 0.330 3.670 18 O -0.459 6.459 19 C -0.177 4.177 20 C -0.144 4.144 21 H 0.159 0.841 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.118 4.118 28 C -0.153 4.153 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.153 0.847 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.080 0.920 53 H 0.096 0.904 54 H 0.087 0.913 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.139 -26.152 9.100 29.159 hybrid contribution -0.301 1.203 -0.281 1.272 sum 8.838 -24.948 8.819 27.898 Atomic orbital electron populations 1.21848 0.77643 1.03776 1.02254 1.47748 1.08175 1.05252 1.72138 1.21545 0.98607 0.85179 0.94986 1.22919 0.86609 0.99287 0.94141 1.87983 1.29578 1.87702 1.25612 1.22641 0.97143 0.98433 0.82819 1.20844 0.91830 0.89945 0.94784 1.42478 1.17506 1.35870 1.42418 1.19647 0.93701 1.10371 1.13923 0.90643 1.25581 1.02596 0.99521 0.99190 1.69836 1.39473 1.25407 1.27226 0.85125 0.79790 0.76701 0.78042 1.21316 1.22244 1.19427 1.20118 0.87006 0.85289 0.74595 1.90632 1.15326 1.87826 1.52165 1.21622 1.02186 0.89233 1.04667 1.23099 1.01431 1.01075 0.88841 0.84149 1.22007 0.96554 0.97489 0.97005 1.21213 0.97911 0.93648 1.01979 1.20333 0.98193 0.97931 0.98845 1.21675 0.98378 1.00879 0.94514 1.21600 1.00302 0.97298 0.95688 1.19962 1.01928 0.91078 0.98808 1.21035 0.98104 0.93289 1.02868 0.90046 0.93053 0.88779 0.91212 0.89153 0.88362 0.91695 0.93944 0.93504 0.91223 0.93985 0.95857 0.79293 0.94080 0.84666 0.93312 0.90629 0.91916 0.91898 0.92900 0.92557 0.91142 0.91364 0.92034 0.90411 0.91311 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.02 9.67 127.77 1.24 3.26 16 2 N -0.60 -15.62 2.84 -846.76 -2.40 -18.02 16 3 C 0.12 3.20 5.86 86.38 0.51 3.71 16 4 C 0.05 1.39 6.28 71.98 0.45 1.85 16 5 O -0.39 -13.70 9.86 -148.98 -1.47 -15.17 16 6 C 0.07 2.25 6.07 71.98 0.44 2.69 16 7 C 0.15 6.25 6.65 86.38 0.57 6.82 16 8 N -0.74 -38.66 5.55 -343.45 -1.91 -40.56 16 9 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 10 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 12 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 13 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 C 0.54 14.36 6.74 87.66 0.59 14.95 16 18 O -0.58 -18.86 14.64 -3.04 -0.04 -18.90 16 19 C -0.16 -3.11 4.57 -13.11 -0.06 -3.17 16 20 C -0.13 -2.02 4.41 -10.51 -0.05 -2.07 16 21 H 0.14 1.73 5.48 -2.39 -0.01 1.71 16 22 C -0.09 -1.62 5.94 31.76 0.19 -1.44 16 23 C -0.11 -1.61 5.43 29.99 0.16 -1.44 16 24 C -0.12 -1.30 4.44 28.79 0.13 -1.17 16 25 C -0.12 -1.15 5.38 30.49 0.16 -0.99 16 26 C -0.11 -1.23 5.68 30.72 0.17 -1.05 16 27 C -0.08 -1.10 5.27 28.91 0.15 -0.95 16 28 C -0.13 -2.45 3.59 -12.62 -0.05 -2.49 16 29 H 0.08 1.93 6.40 -2.39 -0.02 1.92 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.62 6.64 -2.39 -0.02 1.60 16 32 H 0.07 1.71 7.89 -2.39 -0.02 1.69 16 33 H 0.09 2.39 7.89 -2.39 -0.02 2.37 16 34 H 0.10 2.53 7.42 -2.39 -0.02 2.51 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.38 21.07 7.67 -92.71 -0.71 20.36 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.14 2.30 7.27 -2.39 -0.02 2.29 16 44 H 0.05 1.14 6.56 -2.39 -0.02 1.12 16 45 H 0.08 1.17 8.13 -2.38 -0.02 1.15 16 46 H 0.06 1.04 4.57 -2.39 -0.01 1.02 16 47 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.05 0.55 8.12 -2.39 -0.02 0.53 16 49 H 0.06 0.61 7.84 -2.39 -0.02 0.59 16 50 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.07 0.66 5.15 -2.39 -0.01 0.64 16 52 H 0.06 0.77 6.33 -2.39 -0.02 0.75 16 53 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.07 0.83 8.00 -2.39 -0.02 0.81 16 55 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -69.83 415.33 2.56 -67.26 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.15 Total: 35.20 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.92 Total: 1.49 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.02 Total: -118.23 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.51 Total: -34.07 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -69.83 2.56 -67.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333251761.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.126 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds