Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00041 * 2 1 4 4 C 1.52999 * 109.47286 * 269.99912 * 3 2 1 5 5 O 1.42898 * 109.47174 * 64.99803 * 4 3 2 6 6 C 1.42906 * 113.99824 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46752 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47070 * 64.99887 * 7 6 5 9 9 C 1.36943 * 119.99999 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99492 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47446 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47101 * 119.99829 * 13 11 9 16 16 H 1.48501 * 109.47204 * 239.99816 * 13 11 9 17 17 C 1.34781 * 119.99683 * 179.97438 * 2 1 3 18 18 O 1.21281 * 119.99766 * 180.02562 * 17 2 1 19 19 C 1.50696 * 119.99946 * 0.02562 * 17 2 1 20 20 H 1.08886 * 115.59112 * 34.42106 * 19 17 2 21 21 C 1.52889 * 117.50609 * 180.56443 * 19 17 2 22 22 H 1.11443 * 115.23767 * 359.56403 * 21 19 17 23 23 C 1.52378 * 116.98374 * 222.77856 * 21 19 17 24 24 C 1.53032 * 108.43325 * 207.60860 * 23 21 19 25 25 C 1.53144 * 108.25303 * 82.44658 * 24 23 21 26 26 C 1.52555 * 115.62456 * 34.11464 * 25 24 23 27 27 C 1.53442 * 114.09039 * 287.28263 * 26 25 24 28 28 C 1.53758 * 109.47846 * 326.29520 * 27 26 25 29 29 C 1.50662 * 60.53007 * 107.19393 * 21 19 17 30 30 H 1.11726 * 117.17467 * 255.13391 * 29 21 19 31 31 H 1.09009 * 109.46711 * 90.00162 * 1 2 3 32 32 H 1.08995 * 109.47358 * 209.99787 * 1 2 3 33 33 H 1.09000 * 109.46958 * 330.00591 * 1 2 3 34 34 H 1.08999 * 109.47193 * 149.99952 * 3 2 1 35 35 H 1.08997 * 109.47580 * 29.99810 * 3 2 1 36 36 H 1.09008 * 109.47150 * 305.00285 * 4 3 2 37 37 H 1.09002 * 109.47561 * 185.00404 * 4 3 2 38 38 H 1.08993 * 109.47732 * 60.00254 * 6 5 4 39 39 H 1.09000 * 109.47141 * 299.99893 * 6 5 4 40 40 H 1.09004 * 109.46579 * 184.99441 * 7 6 5 41 41 H 1.08992 * 109.47046 * 304.99625 * 7 6 5 42 42 H 0.97001 * 120.00404 * 359.97438 * 8 7 6 43 43 H 0.96994 * 119.99748 * 180.02562 * 12 11 9 44 44 H 1.07411 * 114.84084 * 333.24138 * 23 21 19 45 45 H 1.11106 * 108.25203 * 91.62480 * 23 21 19 46 46 H 1.08589 * 109.83522 * 201.60054 * 24 23 21 47 47 H 1.08579 * 109.86127 * 323.24546 * 24 23 21 48 48 H 1.09682 * 106.92052 * 154.19332 * 25 24 23 49 49 H 1.08336 * 108.34492 * 269.44159 * 25 24 23 50 50 H 1.09855 * 108.77221 * 49.12417 * 26 25 24 51 51 H 1.09815 * 108.80264 * 165.39509 * 26 25 24 52 52 H 1.08264 * 113.36746 * 92.57816 * 27 26 25 53 53 H 1.11254 * 107.70556 * 208.90908 * 27 26 25 54 54 H 1.11026 * 108.04342 * 224.96090 * 28 27 26 55 55 H 1.09508 * 110.63358 * 339.38114 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2061 1.9935 -2.0814 6 6 1.3325 2.4164 -3.4406 7 6 -0.0565 2.6907 -4.0206 8 7 -0.6645 3.8229 -3.3173 9 6 -1.9164 4.2539 -3.6671 10 1 -2.4552 3.7593 -4.4617 11 6 -2.4923 5.3270 -3.0011 12 7 -1.8353 5.9301 -2.0331 13 14 -4.2002 5.9144 -3.4778 14 1 -4.7209 5.0748 -4.5865 15 1 -5.1060 5.8054 -2.3062 16 1 -4.1312 7.3303 -3.9202 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 1 0.4488 -2.4746 -0.5550 21 6 2.2065 -3.7618 0.0145 22 1 3.3120 -3.6212 0.0160 23 6 1.7454 -4.8851 -0.9061 24 6 2.1828 -6.2195 -0.2979 25 6 1.1532 -6.6245 0.7610 26 6 -0.2900 -6.2302 0.4627 27 6 -0.5727 -4.7293 0.6108 28 6 0.2927 -4.1541 1.7441 29 6 1.4701 -3.3385 1.2589 30 1 2.0792 -2.9072 2.0903 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 3.1499 1.1383 0.5138 35 1 1.6085 2.0284 0.5138 36 1 2.9643 0.9130 -1.9816 37 1 3.0733 2.6063 -1.4438 38 1 1.8208 1.6335 -4.0208 39 1 1.9302 3.3269 -3.4837 40 1 0.0328 2.9271 -5.0809 41 1 -0.6828 1.8073 -3.8968 42 1 -0.1803 4.2673 -2.6039 43 1 -2.2379 6.6797 -1.5675 44 1 0.6959 -4.8791 -1.1347 45 1 2.2739 -4.7779 -1.8776 46 1 2.2196 -6.9820 -1.0702 47 1 3.1552 -6.1095 0.1725 48 1 1.1928 -7.7175 0.8433 49 1 1.4682 -6.2197 1.7152 50 1 -0.5366 -6.5400 -0.5621 51 1 -0.9554 -6.7868 1.1360 52 1 -0.4593 -4.1777 -0.3138 53 1 -1.6414 -4.6129 0.8973 54 1 -0.3503 -3.4997 2.3695 55 1 0.6261 -4.9507 2.4175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333251763.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = -70.422766 kcal Electronic energy + Delta-G solvation = -30406.894414 eV Core-core repulsion = 26444.022969 eV Total energy + Delta-G solvation = -3962.871446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61508 -39.92334 -38.95464 -36.83636 -36.12005 -35.83114 -33.48686 -33.42985 -31.44176 -29.39816 -28.79247 -27.92050 -27.39009 -25.59988 -25.31465 -23.30876 -22.80055 -21.82900 -21.53946 -20.33370 -19.33447 -19.24054 -18.27008 -17.65392 -17.38262 -16.94900 -16.57090 -16.40408 -16.25441 -15.83135 -15.62004 -15.31978 -15.24476 -14.76777 -14.63942 -14.32830 -14.24048 -14.12196 -13.84003 -13.64289 -13.42720 -13.20693 -13.16987 -13.01522 -12.79734 -12.75215 -12.70260 -12.51415 -12.35068 -12.11306 -12.10195 -11.99402 -11.92171 -11.69283 -11.52309 -11.10575 -10.98497 -10.97246 -10.84739 -10.68564 -10.54243 -10.41861 -9.69923 -8.97700 -7.92300 -5.21024 1.42512 1.48542 1.49474 1.59651 1.97362 2.57640 2.74569 2.83756 3.41163 3.42197 3.72690 3.79260 3.85546 3.94372 4.00806 4.04491 4.09082 4.15097 4.16667 4.24546 4.28863 4.31838 4.33622 4.42233 4.44462 4.46565 4.51033 4.54343 4.63276 4.67852 4.74422 4.78600 4.83105 4.93343 4.97549 5.01781 5.03164 5.05449 5.08627 5.12644 5.19563 5.22887 5.26609 5.34039 5.40047 5.47827 5.48333 5.50342 5.66789 5.70041 6.25604 6.30163 6.40539 7.12203 7.35777 8.11158 8.35993 9.31510 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002252 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.476055 B =12431.838270 C =13295.756985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.602 5.602 3 C 0.119 3.881 4 C 0.048 3.952 5 O -0.389 6.389 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.293 1.293 16 H -0.294 1.294 17 C 0.539 3.461 18 O -0.585 6.585 19 C -0.204 4.204 20 H 0.134 0.866 21 C -0.099 4.099 22 H 0.089 0.911 23 C -0.095 4.095 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.122 4.122 28 C -0.090 4.090 29 C -0.083 4.083 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.023 0.977 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.070 0.930 53 H 0.060 0.940 54 H 0.063 0.937 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 -26.715 7.562 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.333 5.333 3 C -0.004 4.004 4 C -0.030 4.030 5 O -0.309 6.309 6 C -0.011 4.011 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.221 1.221 17 C 0.329 3.671 18 O -0.467 6.467 19 C -0.225 4.225 20 H 0.152 0.848 21 C -0.118 4.118 22 H 0.107 0.893 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.158 4.158 26 C -0.147 4.147 27 C -0.159 4.159 28 C -0.126 4.126 29 C -0.102 4.102 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.088 0.912 53 H 0.079 0.921 54 H 0.082 0.918 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.224 -26.742 7.545 28.709 hybrid contribution -0.276 1.272 -0.232 1.323 sum 6.947 -25.469 7.312 27.394 Atomic orbital electron populations 1.21825 0.77666 1.03667 1.02191 1.47776 1.08165 1.05302 1.72082 1.21553 0.98623 0.85224 0.95027 1.22923 0.86564 0.99282 0.94203 1.87983 1.29508 1.87592 1.25798 1.22647 0.97165 0.98410 0.82832 1.20841 0.91815 0.89959 0.94763 1.42487 1.17363 1.36058 1.42373 1.19684 0.93572 1.10395 1.13860 0.90628 1.25578 1.02595 0.99547 0.99184 1.69841 1.39410 1.25524 1.27185 0.85060 0.79676 0.77561 0.77374 1.19004 1.21968 1.22102 1.20227 0.86957 0.85381 0.74519 1.90630 1.15472 1.87950 1.52612 1.22393 1.03213 0.89300 1.07601 0.84844 1.22206 0.97739 0.92612 0.99253 0.89331 1.21319 1.02679 0.92910 0.96321 1.21430 0.98760 0.95940 0.98614 1.21491 0.94236 1.00679 0.99436 1.21564 0.95905 0.95158 1.02080 1.22049 0.99334 0.95734 0.98831 1.21207 0.94317 0.99162 0.97959 1.21876 1.00090 0.97983 0.90255 0.88592 0.93128 0.88904 0.91220 0.88367 0.89124 0.93970 0.91661 0.91221 0.93488 0.93961 0.95870 0.79296 0.94082 0.88897 0.93264 0.91505 0.91909 0.92605 0.91756 0.92312 0.91562 0.91207 0.92083 0.91808 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.10 9.65 127.77 1.23 3.33 16 2 N -0.60 -15.88 2.84 -846.77 -2.40 -18.28 16 3 C 0.12 3.21 5.86 86.38 0.51 3.71 16 4 C 0.05 1.40 6.28 71.98 0.45 1.85 16 5 O -0.39 -13.76 9.84 -148.98 -1.47 -15.23 16 6 C 0.07 2.25 6.07 71.98 0.44 2.69 16 7 C 0.15 6.26 6.65 86.38 0.57 6.84 16 8 N -0.74 -38.67 5.55 -343.45 -1.91 -40.58 16 9 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 10 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 11 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 12 N -0.97 -59.96 13.06 21.65 0.28 -59.67 16 13 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 17 C 0.54 14.64 7.45 87.66 0.65 15.29 16 18 O -0.59 -19.59 15.73 -3.03 -0.05 -19.64 16 19 C -0.20 -4.11 3.98 -11.58 -0.05 -4.16 16 20 H 0.13 2.41 6.01 -2.45 -0.01 2.40 16 21 C -0.10 -1.82 4.56 -11.79 -0.05 -1.87 16 22 H 0.09 2.04 7.69 -1.06 -0.01 2.03 16 23 C -0.10 -1.39 4.80 30.40 0.15 -1.24 16 24 C -0.11 -1.32 6.07 30.65 0.19 -1.13 16 25 C -0.12 -1.24 5.08 30.49 0.15 -1.08 16 26 C -0.11 -1.06 5.00 30.60 0.15 -0.91 16 27 C -0.12 -1.34 4.97 31.00 0.15 -1.18 16 28 C -0.09 -1.05 4.95 30.27 0.15 -0.90 16 29 C -0.08 -1.36 5.62 -12.13 -0.07 -1.43 16 30 H 0.10 1.74 8.36 -0.90 -0.01 1.73 16 31 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.65 6.64 -2.39 -0.02 1.64 16 33 H 0.07 1.73 7.89 -2.39 -0.02 1.71 16 34 H 0.10 2.56 7.42 -2.39 -0.02 2.54 16 35 H 0.09 2.42 7.89 -2.39 -0.02 2.40 16 36 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.38 21.08 7.67 -92.71 -0.71 20.37 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.09 1.23 4.15 -3.21 -0.01 1.22 16 45 H 0.05 0.78 8.31 -1.25 -0.01 0.77 16 46 H 0.07 0.71 8.11 -2.60 -0.02 0.69 16 47 H 0.06 0.81 7.88 -2.61 -0.02 0.79 16 48 H 0.06 0.51 8.19 -2.02 -0.02 0.49 16 49 H 0.06 0.68 5.78 -2.74 -0.02 0.66 16 50 H 0.06 0.57 7.98 -1.93 -0.02 0.55 16 51 H 0.07 0.56 8.21 -1.95 -0.02 0.54 16 52 H 0.07 0.86 4.30 -2.77 -0.01 0.85 16 53 H 0.06 0.61 8.33 -1.17 -0.01 0.60 16 54 H 0.06 0.71 8.31 -1.29 -0.01 0.70 16 55 H 0.09 0.91 5.94 -2.12 -0.01 0.90 16 Total: -1.00 -70.02 418.57 2.63 -67.39 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.20 Total: 34.77 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.94 Total: 2.87 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -4.03 Total: -118.53 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.51 Total: -34.87 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -70.02 2.63 -67.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333251763.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.029 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds