Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00051 * 2 1 4 4 C 1.52994 * 109.47146 * 270.00174 * 3 2 1 5 5 O 1.42903 * 109.46865 * 65.00333 * 4 3 2 6 6 C 1.42898 * 113.99954 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47218 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47069 * 65.00605 * 7 6 5 9 9 C 1.36939 * 119.99962 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00339 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99906 * 179.97438 * 9 8 7 12 12 N 1.31612 * 119.99963 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99942 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.47249 * 90.00082 * 13 11 9 15 15 H 1.48501 * 109.47095 * 210.00246 * 13 11 9 16 16 H 1.48504 * 109.47315 * 330.00262 * 13 11 9 17 17 C 1.34779 * 119.99692 * 180.02562 * 2 1 3 18 18 O 1.21288 * 119.99891 * 184.58326 * 17 2 1 19 19 C 1.50695 * 120.00421 * 4.58092 * 17 2 1 20 20 C 1.52995 * 115.55087 * 269.20944 * 19 17 2 21 21 C 1.52994 * 109.47622 * 62.97872 * 20 19 17 22 22 C 1.52995 * 109.47622 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47191 * 59.99771 * 22 21 20 24 24 C 1.53001 * 109.47169 * 300.00122 * 23 22 21 25 25 C 1.53003 * 109.47134 * 60.00083 * 24 23 22 26 26 C 1.53002 * 117.49779 * 54.87793 * 19 17 2 27 27 C 1.52998 * 117.49952 * 123.53589 * 19 17 2 28 28 H 1.09008 * 109.46768 * 275.24506 * 1 2 3 29 29 H 1.08992 * 109.47244 * 35.24557 * 1 2 3 30 30 H 1.09003 * 109.47418 * 155.25213 * 1 2 3 31 31 H 1.09001 * 109.47000 * 30.00811 * 3 2 1 32 32 H 1.09008 * 109.46622 * 150.00184 * 3 2 1 33 33 H 1.09004 * 109.46841 * 184.99496 * 4 3 2 34 34 H 1.08995 * 109.47802 * 305.00104 * 4 3 2 35 35 H 1.09002 * 109.47641 * 300.00018 * 6 5 4 36 36 H 1.09001 * 109.47130 * 59.99662 * 6 5 4 37 37 H 1.09004 * 109.46886 * 185.00014 * 7 6 5 38 38 H 1.08994 * 109.47482 * 305.00000 * 7 6 5 39 39 H 0.97003 * 119.99958 * 359.97438 * 8 7 6 40 40 H 0.97001 * 119.99944 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.46801 * 182.97694 * 20 19 17 42 42 H 1.09003 * 109.47406 * 59.99436 * 21 20 19 43 43 H 1.08998 * 109.46735 * 300.00189 * 21 20 19 44 44 H 1.09004 * 109.46801 * 299.99822 * 22 21 20 45 45 H 1.08996 * 109.47039 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47206 * 60.00299 * 23 22 21 47 47 H 1.08999 * 109.47116 * 180.02562 * 23 22 21 48 48 H 1.08997 * 109.47290 * 179.97438 * 24 23 22 49 49 H 1.09004 * 109.47202 * 300.00180 * 24 23 22 50 50 H 1.09001 * 109.47230 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.47416 * 59.99902 * 25 24 23 52 52 H 1.08994 * 117.50212 * 215.00490 * 26 19 17 53 53 H 1.09004 * 117.49834 * 0.02773 * 26 19 17 54 54 H 1.09006 * 117.49908 * 359.97438 * 27 19 17 55 55 H 1.08998 * 117.50515 * 144.97467 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2059 1.9936 -2.0812 6 6 1.3323 2.4176 -3.4400 7 6 -0.0568 2.6907 -4.0203 8 7 -0.6663 3.8218 -3.3165 9 6 -1.9189 4.2509 -3.6658 10 1 -2.4574 3.7558 -4.4603 11 6 -2.4966 5.3224 -2.9986 12 7 -3.7003 5.7352 -3.3346 13 14 -1.5656 6.1784 -1.6238 14 1 -0.7566 7.2877 -2.1898 15 1 -2.5316 6.7238 -0.6366 16 1 -0.6683 5.2042 -0.9522 17 6 2.1388 -1.1673 -0.0005 18 8 3.3488 -1.1690 0.0834 19 6 1.3890 -2.4702 -0.1053 20 6 0.9816 -3.1060 1.2253 21 6 0.0117 -2.1775 1.9586 22 6 -0.3952 -2.8130 3.2895 23 6 0.8497 -3.0333 4.1511 24 6 1.8197 -3.9619 3.4179 25 6 2.2266 -3.3264 2.0870 26 6 0.4391 -2.6452 -1.2920 27 6 1.7640 -3.4108 -1.2523 28 1 -0.3633 0.0940 1.0235 29 1 -0.3633 0.8392 -0.5930 30 1 -0.3634 -0.9333 -0.4302 31 1 1.6085 2.0283 0.5140 32 1 3.1500 1.1383 0.5139 33 1 3.0731 2.6065 -1.4437 34 1 2.9641 0.9132 -1.9816 35 1 1.9296 3.3284 -3.4824 36 1 1.8209 1.6353 -4.0208 37 1 0.0326 2.9280 -5.0804 38 1 -0.6822 1.8066 -3.8973 39 1 -0.1828 4.2663 -2.6027 40 1 -4.1042 6.4836 -2.8681 41 1 0.4957 -4.0634 1.0368 42 1 -0.8751 -2.0201 1.3445 43 1 0.4976 -1.2202 2.1470 44 1 -0.8810 -3.7705 3.1014 45 1 -1.0858 -2.1512 3.8120 46 1 1.3355 -2.0758 4.3392 47 1 0.5599 -3.4865 5.0991 48 1 2.7068 -4.1185 4.0316 49 1 1.3339 -4.9195 3.2298 50 1 2.9173 -3.9882 1.5644 51 1 2.7124 -2.3689 2.2750 52 1 -0.4759 -3.2132 -1.1247 53 1 0.3570 -1.8180 -1.9971 54 1 2.5528 -3.0870 -1.9313 55 1 1.7209 -4.4826 -1.0588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333266634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = -76.388292 kcal Electronic energy + Delta-G solvation = -31410.042889 eV Core-core repulsion = 27446.912759 eV Total energy + Delta-G solvation = -3963.130130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83500 -39.52392 -38.89619 -37.21407 -36.89199 -36.17926 -33.64666 -31.85150 -31.52043 -31.24015 -29.63940 -27.66100 -25.55672 -25.15188 -24.10487 -23.76264 -22.91764 -22.83122 -22.29790 -20.81769 -19.75023 -19.39880 -18.04742 -17.58072 -17.52221 -16.98160 -16.76427 -16.25245 -16.09787 -15.87033 -15.47328 -15.31944 -15.08719 -14.87829 -14.77077 -14.54829 -14.36221 -14.10298 -13.85025 -13.69991 -13.57660 -13.49492 -13.20078 -13.09450 -12.89273 -12.82689 -12.71833 -12.54746 -12.37961 -12.17283 -12.14136 -11.94123 -11.91248 -11.77211 -11.73548 -11.43654 -11.36670 -11.00653 -10.86757 -10.76568 -10.59646 -10.45368 -9.67612 -9.28240 -8.01403 -5.33936 1.39185 1.41568 1.50123 1.55172 1.95154 2.49909 2.67132 2.71111 3.30762 3.41709 3.53832 3.66557 3.78104 3.79598 3.97563 3.99204 4.01649 4.10596 4.21922 4.26151 4.36466 4.38386 4.40959 4.42954 4.45063 4.50684 4.57702 4.59393 4.63164 4.64563 4.68309 4.69367 4.71596 4.78046 4.84310 4.93645 4.97848 5.07042 5.09219 5.10580 5.16867 5.18541 5.24785 5.27074 5.29480 5.39549 5.45374 5.48084 5.58435 5.76131 6.20034 6.25027 6.40146 7.09500 7.13174 7.85775 8.05784 9.20185 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.002817 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.845856 B = 9938.220546 C =10581.212994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.598 5.598 3 C 0.114 3.886 4 C 0.048 3.952 5 O -0.391 6.391 6 C 0.063 3.937 7 C 0.155 3.845 8 N -0.753 5.753 9 C -0.232 4.232 10 H 0.057 0.943 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.955 3.045 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.252 1.252 17 C 0.550 3.450 18 O -0.580 6.580 19 C -0.156 4.156 20 C -0.031 4.031 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.156 4.156 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.035 0.965 52 H 0.128 0.872 53 H 0.090 0.910 54 H 0.082 0.918 55 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -22.859 12.913 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.329 5.329 3 C -0.008 4.008 4 C -0.029 4.029 5 O -0.311 6.311 6 C -0.014 4.014 7 C 0.029 3.971 8 N -0.399 5.399 9 C -0.363 4.363 10 H 0.075 0.925 11 C -0.255 4.255 12 N -0.635 5.635 13 Si 0.782 3.218 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.177 1.177 17 C 0.340 3.660 18 O -0.460 6.460 19 C -0.159 4.159 20 C -0.050 4.050 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.193 4.193 27 C -0.181 4.181 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.054 0.946 52 H 0.147 0.853 53 H 0.109 0.891 54 H 0.100 0.900 55 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.045 -22.873 12.926 29.333 hybrid contribution 0.535 1.277 0.317 1.421 sum 13.580 -21.596 13.243 28.743 Atomic orbital electron populations 1.22336 0.78008 1.04684 1.02413 1.47783 1.08040 1.05161 1.71928 1.21564 0.98638 0.85421 0.95216 1.22938 0.86531 0.99576 0.93880 1.87965 1.29596 1.87675 1.25842 1.22702 0.96822 0.99021 0.82808 1.20828 0.91859 0.89491 0.94898 1.42640 1.16989 1.37689 1.42615 1.19056 0.92477 1.10663 1.14120 0.92456 1.25476 0.97432 0.99985 1.02608 1.69880 1.17101 1.30418 1.46110 0.85406 0.78064 0.78835 0.79500 1.20589 1.22219 1.17695 1.20004 0.86721 0.84957 0.74352 1.90640 1.15670 1.87858 1.51860 1.21439 1.05312 0.95000 0.94140 1.20641 0.95774 0.98913 0.89644 1.21835 0.98990 0.98075 0.96838 1.21522 0.97267 1.01448 0.95124 1.21553 0.96225 0.99257 0.98842 1.21516 0.99214 0.99079 0.95368 1.21474 0.96904 1.00015 0.96187 1.23245 0.95315 1.02938 0.97758 1.23100 0.98392 0.98727 0.97928 0.91479 0.91784 0.88452 0.89084 0.88524 0.91184 0.93882 0.92647 0.90877 0.93504 0.95432 0.79995 0.93355 0.88243 0.90500 0.93386 0.90685 0.91719 0.93574 0.91079 0.92105 0.90633 0.92282 0.94628 0.85341 0.89144 0.89988 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 8.17 127.77 1.04 2.52 16 2 N -0.60 -14.30 2.71 -846.75 -2.29 -16.59 16 3 C 0.11 2.75 5.87 86.38 0.51 3.26 16 4 C 0.05 1.21 6.28 71.98 0.45 1.66 16 5 O -0.39 -11.89 9.04 -148.98 -1.35 -13.24 16 6 C 0.06 1.84 6.07 71.98 0.44 2.28 16 7 C 0.16 5.84 6.64 86.38 0.57 6.41 16 8 N -0.75 -35.57 5.35 -343.46 -1.84 -37.41 16 9 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 10 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 11 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 12 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 13 Si 0.95 45.92 27.74 68.60 1.90 47.82 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 16 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 17 C 0.55 13.86 5.39 87.66 0.47 14.33 16 18 O -0.58 -18.49 16.22 -3.06 -0.05 -18.54 16 19 C -0.16 -2.88 0.82 -52.93 -0.04 -2.92 16 20 C -0.03 -0.47 2.01 -10.80 -0.02 -0.49 16 21 C -0.12 -1.78 3.43 30.59 0.10 -1.68 16 22 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 23 C -0.12 -1.63 5.92 30.59 0.18 -1.44 16 24 C -0.11 -1.54 5.92 30.60 0.18 -1.36 16 25 C -0.11 -1.90 4.93 30.60 0.15 -1.75 16 26 C -0.16 -2.41 7.60 30.62 0.23 -2.17 16 27 C -0.14 -2.37 9.93 30.62 0.30 -2.06 16 28 H 0.07 1.29 6.40 -2.38 -0.02 1.28 16 29 H 0.06 1.73 7.04 -2.39 -0.02 1.71 16 30 H 0.10 1.81 3.60 -2.39 -0.01 1.80 16 31 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 32 H 0.10 2.30 7.36 -2.38 -0.02 2.28 16 33 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.37 16.80 5.53 -92.71 -0.51 16.28 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.10 1.14 8.11 -2.39 -0.02 1.12 16 42 H 0.08 1.03 6.95 -2.39 -0.02 1.01 16 43 H 0.05 0.90 6.08 -2.39 -0.01 0.88 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.03 0.83 7.20 -2.39 -0.02 0.81 16 52 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.09 1.69 7.62 -2.38 -0.02 1.67 16 54 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 55 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -72.79 417.26 3.07 -69.73 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.28 Total: 31.79 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.11 Total: -0.49 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.83 Total: -117.07 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.40 Total: -31.78 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -72.79 3.07 -69.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333266634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.660 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds