Wall clock time and date at job start Tue Mar 31 2020 23:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 C 1.53008 * 109.46996 * 305.00297 * 3 2 1 5 5 O 1.42893 * 109.47192 * 65.00154 * 3 2 1 6 6 C 1.52999 * 109.47051 * 185.00233 * 3 2 1 7 7 N 1.46503 * 109.47128 * 182.87100 * 6 3 2 8 8 C 1.36455 * 127.13673 * 67.70584 * 7 6 3 9 9 N 1.38580 * 126.47070 * 0.06501 * 8 7 6 10 10 C 1.46901 * 111.00255 * 76.81536 * 9 8 7 11 11 C 1.46902 * 110.99845 * 200.77308 * 9 8 7 12 12 H 1.08994 * 109.46946 * 299.99316 * 11 9 8 13 13 C 1.52997 * 109.46984 * 59.99779 * 11 9 8 14 14 C 1.50699 * 109.46911 * 179.97438 * 11 9 8 15 15 H 1.07998 * 120.00637 * 0.02562 * 14 11 9 16 16 C 1.37874 * 119.99844 * 179.97438 * 14 11 9 17 17 N 1.31521 * 120.00158 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00313 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47098 * 60.00091 * 18 16 14 20 20 H 1.48498 * 109.47559 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46952 * 300.00755 * 18 16 14 22 22 N 1.31210 * 107.05351 * 180.02562 * 8 7 6 23 23 N 1.28528 * 109.86145 * 359.73223 * 22 8 7 24 24 C 1.30292 * 110.05176 * 0.44942 * 23 22 8 25 25 C 1.50701 * 126.34676 * 179.81959 * 24 23 22 26 26 C 1.52999 * 109.47419 * 239.39609 * 25 24 23 27 27 C 1.53000 * 109.47026 * 119.38897 * 25 24 23 28 28 C 1.53005 * 109.46971 * 359.39340 * 25 24 23 29 29 H 1.08991 * 109.47346 * 59.99562 * 1 2 3 30 30 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46599 * 299.99797 * 1 2 3 32 32 H 1.09000 * 109.46599 * 240.00203 * 2 1 3 33 33 H 1.08998 * 109.46983 * 120.00560 * 2 1 3 34 34 H 1.08996 * 109.46966 * 318.03992 * 4 3 2 35 35 H 1.09003 * 109.46816 * 78.03678 * 4 3 2 36 36 H 1.09002 * 109.46762 * 198.03917 * 4 3 2 37 37 H 0.96701 * 114.00217 * 60.93794 * 5 3 2 38 38 H 1.09003 * 109.46997 * 62.87752 * 6 3 2 39 39 H 1.08995 * 109.47052 * 302.87108 * 6 3 2 40 40 H 1.08993 * 109.46970 * 65.43720 * 10 9 8 41 41 H 1.09004 * 109.46863 * 185.43111 * 10 9 8 42 42 H 1.08995 * 109.47146 * 305.43192 * 10 9 8 43 43 H 1.09001 * 109.46677 * 179.97438 * 13 11 9 44 44 H 1.08998 * 109.47508 * 299.99714 * 13 11 9 45 45 H 1.09000 * 109.47334 * 60.00241 * 13 11 9 46 46 H 0.96996 * 120.00068 * 179.97438 * 17 16 14 47 47 H 1.09001 * 109.46660 * 292.34444 * 26 25 24 48 48 H 1.08990 * 109.47417 * 172.34647 * 26 25 24 49 49 H 1.08998 * 109.46810 * 52.33966 * 26 25 24 50 50 H 1.08999 * 109.46849 * 186.17601 * 27 25 24 51 51 H 1.08989 * 109.47407 * 306.18081 * 27 25 24 52 52 H 1.08998 * 109.46603 * 66.18045 * 27 25 24 53 53 H 1.09004 * 109.47242 * 300.00100 * 28 25 24 54 54 H 1.09005 * 109.47271 * 59.99824 * 28 25 24 55 55 H 1.09004 * 109.47037 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6621 2.0813 1.2210 6 6 3.5649 1.4442 -0.1258 7 7 4.0590 2.8217 -0.0569 8 6 4.0324 3.6534 1.0246 9 7 3.5295 3.3549 2.2810 10 6 4.4630 2.5066 3.0339 11 6 3.2139 4.5808 3.0265 12 1 4.1185 5.1771 3.1448 13 6 2.1667 5.3894 2.2582 14 6 2.6703 4.2171 4.3841 15 1 2.5698 3.1793 4.6654 16 6 2.3023 5.2095 5.2678 17 7 2.4252 6.4734 4.9256 18 14 1.6292 4.7588 6.9510 19 1 2.6455 3.9735 7.6965 20 1 1.3100 5.9980 7.7046 21 1 0.3965 3.9465 6.7899 22 7 4.5736 4.7886 0.6505 23 7 4.9364 4.7147 -0.5803 24 6 4.6419 3.5409 -1.0632 25 6 4.9015 3.0625 -2.4684 26 6 3.5767 2.6740 -3.1279 27 6 5.8282 1.8457 -2.4299 28 6 5.5632 4.1821 -3.2744 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4378 1.5606 -2.0650 35 1 0.4033 2.4776 -0.9437 36 1 2.0141 3.0982 -1.3780 37 1 2.0260 1.6626 2.0131 38 1 3.8512 1.0029 -1.0805 39 1 3.9972 0.8621 0.6879 40 1 5.3779 3.0635 3.2360 41 1 4.0036 2.2082 3.9762 42 1 4.7002 1.6185 2.4480 43 1 1.9322 6.2988 2.8116 44 1 2.5594 5.6525 1.2761 45 1 1.2620 4.7930 2.1400 46 1 2.1659 7.1715 5.5471 47 1 3.1719 1.7893 -2.6363 48 1 3.7454 2.4581 -4.1828 49 1 2.8689 3.4976 -3.0341 50 1 6.1040 1.5667 -3.4468 51 1 6.7268 2.0911 -1.8640 52 1 5.3138 1.0123 -1.9513 53 1 4.9030 5.0491 -3.3018 54 1 6.5070 4.4590 -2.8046 55 1 5.7505 3.8362 -4.2909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401435997.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:40 Heat of formation + Delta-G solvation = 25.556181 kcal Electronic energy + Delta-G solvation = -33720.661130 eV Core-core repulsion = 29794.244395 eV Total energy + Delta-G solvation = -3926.416735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.96790 -39.67123 -38.97780 -37.58827 -35.34331 -34.66029 -33.94147 -31.23551 -30.66855 -30.32224 -28.81198 -28.22473 -27.70505 -27.26617 -26.04559 -24.75179 -23.69548 -23.02989 -21.32186 -20.78856 -20.11778 -18.57705 -17.83304 -17.64483 -17.05525 -16.55939 -16.40838 -16.25044 -16.02575 -15.86061 -15.49919 -15.08645 -14.90160 -14.71109 -14.47156 -14.16695 -13.71311 -13.49104 -13.36949 -13.23470 -13.10165 -12.98953 -12.92800 -12.85208 -12.82469 -12.65804 -12.51580 -12.49443 -12.45009 -12.24397 -12.12229 -12.05992 -11.98881 -11.92383 -11.86395 -11.70783 -11.63384 -11.24495 -11.06715 -10.94106 -10.54889 -10.42174 -10.09746 -8.98050 -8.07395 -6.21681 0.98346 1.42721 1.48187 1.49267 1.56385 2.03246 2.44874 3.08052 3.24448 3.27483 3.38897 3.64122 3.66597 3.82738 3.94386 4.00027 4.02767 4.17255 4.23189 4.32383 4.48220 4.54333 4.58727 4.63480 4.65582 4.74218 4.78346 4.83969 4.84660 4.87987 4.92473 4.95930 4.96776 5.00227 5.05266 5.07277 5.08533 5.10520 5.14330 5.17850 5.24425 5.27087 5.37614 5.43529 5.47723 5.50709 5.51584 5.67315 5.72142 6.02462 6.12252 6.23095 6.73313 6.89096 7.11143 7.46636 8.00709 8.99571 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004538 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.862716 B = 6168.819555 C = 7458.709193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.112 3.888 4 C -0.140 4.140 5 O -0.548 6.548 6 C 0.072 3.928 7 N -0.459 5.459 8 C 0.383 3.617 9 N -0.432 5.432 10 C 0.039 3.961 11 C 0.250 3.750 12 H -0.033 1.033 13 C -0.103 4.103 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.268 1.268 22 N -0.382 5.382 23 N -0.336 5.336 24 C 0.182 3.818 25 C 0.023 3.977 26 C -0.149 4.149 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.379 0.621 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.006 0.994 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.005 0.995 45 H 0.027 0.973 46 H 0.260 0.740 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.041 0.959 50 H 0.101 0.899 51 H 0.044 0.956 52 H 0.070 0.930 53 H 0.041 0.959 54 H 0.046 0.954 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -20.281 -17.261 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.070 3.930 4 C -0.197 4.197 5 O -0.355 6.355 6 C -0.050 4.050 7 N -0.153 5.153 8 C 0.026 3.974 9 N -0.156 5.156 10 C -0.108 4.108 11 C 0.144 3.856 12 H -0.016 1.016 13 C -0.161 4.161 14 C -0.553 4.553 15 H 0.097 0.903 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.193 1.193 22 N -0.225 5.225 23 N -0.174 5.174 24 C -0.087 4.087 25 C 0.021 3.979 26 C -0.206 4.206 27 C -0.198 4.198 28 C -0.184 4.184 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.229 0.771 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.025 0.975 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.118 0.882 49 H 0.060 0.940 50 H 0.119 0.881 51 H 0.063 0.937 52 H 0.089 0.911 53 H 0.060 0.940 54 H 0.065 0.935 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.446 -18.551 -17.535 25.568 hybrid contribution 0.084 -0.103 1.832 1.836 sum 1.530 -18.655 -15.703 24.432 Atomic orbital electron populations 1.21672 0.95255 1.01766 1.01640 1.22114 0.97096 0.93861 1.04256 1.21680 0.90267 0.93929 0.87148 1.22079 1.00652 1.00037 0.96904 1.86795 1.75266 1.58384 1.15067 1.23175 0.96727 0.78423 1.06636 1.46054 1.46878 1.14264 1.08073 1.22785 0.96534 0.87387 0.90715 1.59037 1.38010 1.21080 0.97516 1.22409 0.93196 0.95544 0.99663 1.18780 0.92324 0.83496 0.90972 1.01585 1.21442 0.98136 1.00343 0.96206 1.21326 1.42509 0.93726 0.97758 0.90300 1.25818 0.96000 0.94682 1.02540 1.70109 1.48890 1.00252 1.37095 0.85450 0.79052 0.77213 0.78889 1.18985 1.21868 1.19311 1.74656 1.18876 1.21797 1.07192 1.73817 1.21764 1.18318 1.03478 1.25374 0.99885 0.89213 0.94252 1.19258 0.98264 0.97319 0.83105 1.22351 0.94182 1.01522 1.02571 1.22027 0.98130 0.95151 1.04532 1.21687 0.99932 0.96750 1.00015 0.92635 0.91412 0.94276 0.88407 0.90605 0.87920 0.93219 0.94501 0.77143 0.84735 0.88165 0.97536 0.88433 0.90056 0.92745 0.97568 0.95405 0.93125 0.90522 0.88236 0.94007 0.88070 0.93701 0.91141 0.93971 0.93502 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.39 71.98 0.68 -1.76 16 2 C -0.14 -1.92 5.13 30.60 0.16 -1.76 16 3 C 0.11 2.42 0.85 -10.79 -0.01 2.41 16 4 C -0.14 -3.19 6.20 71.98 0.45 -2.74 16 5 O -0.55 -17.45 9.98 -148.98 -1.49 -18.93 16 6 C 0.07 1.47 4.70 86.38 0.41 1.87 16 7 N -0.46 -14.39 2.19 -514.86 -1.13 -15.52 16 8 C 0.38 16.22 5.38 260.11 1.40 17.62 16 9 N -0.43 -18.33 1.80 -711.02 -1.28 -19.61 16 10 C 0.04 1.40 8.94 127.69 1.14 2.54 16 11 C 0.25 13.51 1.73 44.17 0.08 13.58 16 12 H -0.03 -2.14 7.91 -2.39 -0.02 -2.16 16 13 C -0.10 -5.85 8.80 71.98 0.63 -5.22 16 14 C -0.51 -27.75 7.94 25.60 0.20 -27.54 16 15 H 0.08 3.91 6.40 -2.91 -0.02 3.89 16 16 C 0.01 0.46 5.30 84.65 0.45 0.91 16 17 N -0.92 -55.95 11.32 21.45 0.24 -55.71 16 18 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 N -0.38 -19.07 10.03 -58.01 -0.58 -19.65 16 23 N -0.34 -14.65 11.50 -49.54 -0.57 -15.22 16 24 C 0.18 5.89 5.77 137.64 0.79 6.69 16 25 C 0.02 0.48 0.75 -52.93 -0.04 0.44 16 26 C -0.15 -2.31 6.69 71.98 0.48 -1.83 16 27 C -0.14 -1.99 8.27 71.98 0.60 -1.39 16 28 C -0.13 -2.65 7.97 71.98 0.57 -2.08 16 29 H 0.05 0.92 6.77 -2.39 -0.02 0.90 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.50 6.76 -2.39 -0.02 1.48 16 35 H 0.05 1.32 7.47 -2.39 -0.02 1.30 16 36 H 0.04 1.06 4.61 -2.39 -0.01 1.05 16 37 H 0.38 11.42 7.75 -74.06 -0.57 10.85 16 38 H 0.14 1.77 3.75 -2.39 -0.01 1.76 16 39 H 0.10 1.77 6.80 -2.39 -0.02 1.76 16 40 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.10 3.40 6.29 -2.38 -0.02 3.38 16 42 H 0.08 2.20 6.73 -2.39 -0.02 2.18 16 43 H 0.05 3.37 6.07 -2.39 -0.01 3.36 16 44 H 0.01 0.31 6.24 -2.39 -0.01 0.30 16 45 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.08 0.96 3.58 -2.39 -0.01 0.95 16 48 H 0.10 0.93 8.13 -2.39 -0.02 0.91 16 49 H 0.04 0.87 7.00 -2.39 -0.02 0.85 16 50 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 52 H 0.07 0.77 5.62 -2.39 -0.01 0.76 16 53 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 54 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 55 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -78.88 396.91 5.53 -73.36 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.32 Total: 24.02 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 7.98 Total: 1.75 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -3.32 Total: -125.71 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.49 Total: -18.93 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -78.88 5.53 -73.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401435997.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.912 kcal (2) G-P(sol) polarization free energy of solvation -78.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds