Wall clock time and date at job start Tue Mar 31 2020 23:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.52999 * 109.47299 * 305.00282 * 3 2 1 5 5 O 1.42901 * 109.47066 * 64.99846 * 3 2 1 6 6 C 1.53001 * 109.47139 * 184.99754 * 3 2 1 7 7 N 1.46499 * 109.47042 * 182.90097 * 6 3 2 8 8 C 1.36462 * 127.13451 * 67.52037 * 7 6 3 9 9 N 1.38586 * 126.47095 * 359.97438 * 8 7 6 10 10 C 1.46901 * 110.99906 * 70.04882 * 9 8 7 11 11 C 1.46897 * 110.99566 * 193.99984 * 9 8 7 12 12 H 1.09003 * 109.47032 * 55.00300 * 11 9 8 13 13 C 1.52994 * 109.47434 * 295.00044 * 11 9 8 14 14 C 1.50706 * 109.46690 * 174.99896 * 11 9 8 15 15 H 1.07998 * 120.00217 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99652 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00381 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99502 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47351 * 60.00251 * 18 16 14 20 20 H 1.48508 * 109.46658 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47046 * 299.99697 * 18 16 14 22 22 N 1.31215 * 107.05549 * 179.97438 * 8 7 6 23 23 N 1.28527 * 109.85716 * 359.72822 * 22 8 7 24 24 C 1.30299 * 110.05492 * 0.45114 * 23 22 8 25 25 C 1.50704 * 126.34601 * 179.81618 * 24 23 22 26 26 C 1.52998 * 109.47363 * 239.16497 * 25 24 23 27 27 C 1.53005 * 109.46768 * 119.16718 * 25 24 23 28 28 C 1.53000 * 109.47345 * 359.17203 * 25 24 23 29 29 H 1.08995 * 109.47137 * 300.00000 * 1 2 3 30 30 H 1.09000 * 109.46809 * 59.99827 * 1 2 3 31 31 H 1.09000 * 109.46673 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47137 * 239.99999 * 2 1 3 33 33 H 1.09000 * 109.46809 * 120.00173 * 2 1 3 34 34 H 1.09006 * 109.46772 * 317.81207 * 4 3 2 35 35 H 1.08998 * 109.47494 * 77.81224 * 4 3 2 36 36 H 1.08999 * 109.47353 * 197.81381 * 4 3 2 37 37 H 0.96707 * 114.00382 * 60.64730 * 5 3 2 38 38 H 1.08995 * 109.46776 * 62.90473 * 6 3 2 39 39 H 1.08997 * 109.47305 * 302.90418 * 6 3 2 40 40 H 1.08995 * 109.47068 * 62.34022 * 10 9 8 41 41 H 1.08998 * 109.47033 * 182.34705 * 10 9 8 42 42 H 1.09003 * 109.46956 * 302.34403 * 10 9 8 43 43 H 1.08998 * 109.47512 * 180.02562 * 13 11 9 44 44 H 1.09003 * 109.47220 * 300.00141 * 13 11 9 45 45 H 1.08997 * 109.46994 * 60.00088 * 13 11 9 46 46 H 0.96994 * 120.00606 * 179.97438 * 17 16 14 47 47 H 1.09003 * 109.47237 * 292.57359 * 26 25 24 48 48 H 1.09002 * 109.47220 * 172.57115 * 26 25 24 49 49 H 1.09007 * 109.46951 * 52.57549 * 26 25 24 50 50 H 1.08994 * 109.47059 * 186.11033 * 27 25 24 51 51 H 1.09005 * 109.47165 * 306.11126 * 27 25 24 52 52 H 1.08999 * 109.47029 * 66.10829 * 27 25 24 53 53 H 1.09008 * 109.46780 * 299.99880 * 28 25 24 54 54 H 1.08999 * 109.47093 * 59.99292 * 28 25 24 55 55 H 1.08999 * 109.46952 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4300 2.1992 -1.1816 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4444 -0.1257 7 7 4.0589 2.8218 -0.0561 8 6 4.0290 3.6541 1.0249 9 7 3.5206 3.3570 2.2795 10 6 4.3706 2.3810 2.9744 11 6 3.3542 4.5760 3.0821 12 1 2.7361 5.2889 2.5363 13 6 4.7254 5.1963 3.3578 14 6 2.6875 4.2300 4.3886 15 1 2.4150 3.2069 4.6015 16 6 2.4253 5.2197 5.3121 17 7 2.7566 6.4657 5.0527 18 14 1.5995 4.7907 6.9318 19 1 2.4424 3.8203 7.6755 20 1 1.4312 6.0230 7.7432 21 1 0.2690 4.1878 6.6646 22 7 4.5725 4.7887 0.6522 23 7 4.9398 4.7138 -0.5772 24 6 4.6462 3.5399 -1.0605 25 6 4.9106 3.0605 -2.4646 26 6 3.5885 2.6673 -3.1267 27 6 5.8407 1.8463 -2.4222 28 6 5.5711 4.1810 -3.2702 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.4415 1.5621 -2.0660 35 1 0.4020 2.4741 -0.9453 36 1 2.0117 3.1004 -1.3754 37 1 2.0222 1.6601 2.0134 38 1 3.8512 1.0035 -1.0805 39 1 3.9972 0.8618 0.6878 40 1 5.3618 2.8074 3.1289 41 1 3.9268 2.1343 3.9389 42 1 4.4540 1.4771 2.3709 43 1 4.6020 6.1005 3.9538 44 1 5.3435 4.4834 3.9036 45 1 5.2076 5.4465 2.4129 46 1 2.5719 7.1620 5.7021 47 1 3.1831 1.7844 -2.6324 48 1 3.7612 2.4468 -4.1801 49 1 2.8794 3.4906 -3.0393 50 1 6.1189 1.5662 -3.4381 51 1 6.7378 2.0955 -1.8554 52 1 5.3279 1.0125 -1.9428 53 1 4.9085 5.0460 -3.3004 54 1 6.5130 4.4611 -2.7985 55 1 5.7628 3.8340 -4.2856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401436006.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:48 Heat of formation + Delta-G solvation = 30.734056 kcal Electronic energy + Delta-G solvation = -33617.118785 eV Core-core repulsion = 29690.926580 eV Total energy + Delta-G solvation = -3926.192206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.96530 -39.70668 -39.16218 -37.62591 -35.35079 -34.63065 -33.97430 -30.92982 -30.66570 -30.12451 -28.82258 -28.19006 -27.72130 -27.21198 -26.70844 -24.78562 -23.50010 -23.03121 -21.28672 -20.81584 -20.16669 -18.41459 -17.88883 -17.54565 -17.14654 -16.59095 -16.44068 -16.34131 -16.04448 -15.80020 -15.43637 -15.09900 -15.00255 -14.66641 -14.43794 -14.22408 -13.56247 -13.44465 -13.40060 -13.27707 -13.14744 -13.00007 -12.96159 -12.88852 -12.82931 -12.69045 -12.62456 -12.51438 -12.47794 -12.36752 -12.11927 -11.98258 -11.97099 -11.90253 -11.85884 -11.71832 -11.58548 -11.20036 -11.03927 -10.76328 -10.51852 -10.43619 -10.16271 -8.89136 -8.06525 -6.20650 1.00077 1.42502 1.47339 1.49057 1.55889 2.04549 2.45080 3.11658 3.23295 3.27497 3.37166 3.62160 3.64967 3.81913 3.93793 3.98971 4.00038 4.16200 4.22136 4.31411 4.46950 4.53293 4.58385 4.62373 4.64375 4.72631 4.74296 4.78103 4.84532 4.85853 4.90825 4.96641 4.99581 5.02544 5.07112 5.07416 5.07666 5.10895 5.16577 5.19933 5.24494 5.36493 5.37459 5.42826 5.46518 5.49924 5.55877 5.68955 5.73186 5.97184 6.18193 6.29906 6.74329 6.89287 7.06936 7.47647 8.02901 9.00062 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.004558 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.941444 B = 6141.055113 C = 7649.982701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.111 3.889 4 C -0.140 4.140 5 O -0.550 6.550 6 C 0.071 3.929 7 N -0.462 5.462 8 C 0.380 3.620 9 N -0.429 5.429 10 C 0.032 3.968 11 C 0.250 3.750 12 H -0.012 1.012 13 C -0.162 4.162 14 C -0.512 4.512 15 H 0.076 0.924 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.271 1.271 22 N -0.377 5.377 23 N -0.337 5.337 24 C 0.181 3.819 25 C 0.024 3.976 26 C -0.149 4.149 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.379 0.621 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.018 0.982 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.046 0.954 46 H 0.259 0.741 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.041 0.959 50 H 0.100 0.900 51 H 0.044 0.956 52 H 0.069 0.931 53 H 0.041 0.959 54 H 0.046 0.954 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -20.375 -17.513 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.069 3.931 4 C -0.197 4.197 5 O -0.358 6.358 6 C -0.051 4.051 7 N -0.156 5.156 8 C 0.023 3.977 9 N -0.153 5.153 10 C -0.115 4.115 11 C 0.144 3.856 12 H 0.006 0.994 13 C -0.221 4.221 14 C -0.551 4.551 15 H 0.094 0.906 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.218 1.218 21 H -0.196 1.196 22 N -0.220 5.220 23 N -0.175 5.175 24 C -0.088 4.088 25 C 0.021 3.979 26 C -0.206 4.206 27 C -0.198 4.198 28 C -0.184 4.184 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.228 0.772 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.036 0.964 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.060 0.940 50 H 0.119 0.881 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.061 0.939 54 H 0.065 0.935 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.428 -18.602 -17.785 25.776 hybrid contribution 0.012 -0.166 1.875 1.883 sum 1.440 -18.768 -15.909 24.646 Atomic orbital electron populations 1.21680 0.95216 1.01830 1.01662 1.22125 0.97148 0.93784 1.04344 1.21714 0.90351 0.94013 0.87063 1.22075 1.00673 1.00057 0.96893 1.86802 1.75594 1.58235 1.15135 1.23200 0.96656 0.78536 1.06722 1.46017 1.47140 1.14213 1.08195 1.22972 0.96461 0.87680 0.90602 1.59164 1.42688 1.15750 0.97675 1.22481 0.94685 0.93962 1.00347 1.18752 0.92416 0.83898 0.90527 0.99439 1.22347 0.98472 1.01413 0.99918 1.21294 1.38591 0.95031 1.00151 0.90612 1.25795 0.96424 0.94690 1.02136 1.70103 1.48283 1.01193 1.36745 0.85467 0.79092 0.77274 0.78865 1.18813 1.21837 1.19619 1.74686 1.19037 1.21559 1.06743 1.73827 1.21758 1.18248 1.03644 1.25344 0.99850 0.89300 0.94297 1.19251 0.98218 0.97288 0.83169 1.22348 0.94238 1.01499 1.02542 1.22027 0.98119 0.95202 1.04495 1.21683 0.99946 0.96746 0.99998 0.94287 0.92581 0.91338 0.88294 0.90564 0.87817 0.93152 0.94504 0.77159 0.84637 0.88134 0.96365 0.88767 0.89954 0.92674 0.95465 0.93563 0.93177 0.90561 0.88244 0.93970 0.88100 0.93715 0.91173 0.93942 0.93510 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.39 71.98 0.68 -1.74 16 2 C -0.14 -1.90 5.13 30.60 0.16 -1.74 16 3 C 0.11 2.38 0.85 -10.79 -0.01 2.37 16 4 C -0.14 -3.17 6.21 71.98 0.45 -2.72 16 5 O -0.55 -17.60 9.95 -148.98 -1.48 -19.08 16 6 C 0.07 1.43 4.49 86.38 0.39 1.82 16 7 N -0.46 -14.41 2.19 -514.85 -1.13 -15.54 16 8 C 0.38 16.09 6.03 260.11 1.57 17.66 16 9 N -0.43 -18.27 2.07 -711.00 -1.47 -19.74 16 10 C 0.03 1.12 8.10 127.69 1.03 2.16 16 11 C 0.25 13.52 2.08 44.17 0.09 13.62 16 12 H -0.01 -0.81 8.11 -2.39 -0.02 -0.83 16 13 C -0.16 -8.89 8.27 71.98 0.60 -8.30 16 14 C -0.51 -27.82 7.92 25.60 0.20 -27.61 16 15 H 0.08 3.81 6.75 -2.91 -0.02 3.79 16 16 C 0.01 0.45 5.30 84.66 0.45 0.90 16 17 N -0.92 -56.08 11.32 21.45 0.24 -55.84 16 18 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 N -0.38 -18.61 8.97 -58.00 -0.52 -19.13 16 23 N -0.34 -14.60 11.50 -49.54 -0.57 -15.17 16 24 C 0.18 5.84 5.78 137.64 0.80 6.63 16 25 C 0.02 0.48 0.75 -52.93 -0.04 0.44 16 26 C -0.15 -2.28 6.69 71.98 0.48 -1.80 16 27 C -0.14 -1.98 8.28 71.98 0.60 -1.39 16 28 C -0.13 -2.63 7.97 71.98 0.57 -2.06 16 29 H 0.04 0.85 7.82 -2.39 -0.02 0.83 16 30 H 0.06 0.91 6.76 -2.39 -0.02 0.89 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.48 6.77 -2.38 -0.02 1.47 16 35 H 0.05 1.32 7.45 -2.39 -0.02 1.30 16 36 H 0.04 1.05 4.67 -2.39 -0.01 1.04 16 37 H 0.38 11.35 7.40 -74.05 -0.55 10.81 16 38 H 0.14 1.76 3.76 -2.39 -0.01 1.76 16 39 H 0.10 1.76 6.20 -2.39 -0.01 1.75 16 40 H 0.02 0.69 6.37 -2.39 -0.02 0.67 16 41 H 0.09 3.28 6.48 -2.39 -0.02 3.26 16 42 H 0.08 2.13 5.95 -2.39 -0.01 2.12 16 43 H 0.05 3.35 6.07 -2.39 -0.01 3.33 16 44 H 0.03 1.38 6.42 -2.39 -0.02 1.36 16 45 H 0.05 2.57 5.41 -2.39 -0.01 2.56 16 46 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 47 H 0.08 0.94 3.58 -2.39 -0.01 0.93 16 48 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.04 0.86 7.02 -2.38 -0.02 0.85 16 50 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.07 0.76 5.65 -2.39 -0.01 0.75 16 53 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 54 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 55 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -78.83 390.31 5.46 -73.36 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.36 Total: 27.05 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 8.01 Total: -1.76 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -3.45 Total: -125.42 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.48 Total: -19.08 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -78.83 5.46 -73.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401436006.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.098 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds