Wall clock time and date at job start Tue Mar 31 2020 23:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46823 * 2 1 4 4 N 1.30296 * 126.34761 * 78.89047 * 3 2 1 5 5 N 1.28527 * 110.05195 * 179.97438 * 4 3 2 6 6 C 1.31226 * 109.86193 * 0.02562 * 5 4 3 7 7 N 1.38574 * 126.47382 * 180.02562 * 6 5 4 8 8 C 1.46902 * 111.00267 * 106.85262 * 7 6 5 9 9 C 1.50708 * 109.47216 * 301.35598 * 8 7 6 10 10 H 1.08006 * 119.99583 * 4.57875 * 9 8 7 11 11 C 1.37873 * 119.99882 * 184.58036 * 9 8 7 12 12 N 1.31516 * 119.99775 * 184.92945 * 11 9 8 13 13 Si 1.86805 * 120.00226 * 4.93723 * 11 9 8 14 14 H 1.48494 * 109.47013 * 94.34897 * 13 11 9 15 15 H 1.48495 * 109.46834 * 214.35104 * 13 11 9 16 16 H 1.48498 * 109.46568 * 334.34996 * 13 11 9 17 17 C 1.46903 * 111.00126 * 342.90209 * 7 6 5 18 18 C 1.52998 * 109.47438 * 196.17421 * 17 7 6 19 19 C 1.52997 * 109.47317 * 174.54061 * 18 17 7 20 20 C 1.52995 * 109.46919 * 65.00123 * 19 18 17 21 21 C 1.52998 * 109.46859 * 185.00198 * 19 18 17 22 22 N 1.36446 * 107.05250 * 359.97438 * 6 5 4 23 23 C 1.46502 * 127.13727 * 180.02562 * 22 6 5 24 24 C 1.53006 * 109.46893 * 277.77249 * 23 22 6 25 25 C 1.52997 * 109.46884 * 182.92469 * 24 23 22 26 26 C 1.53001 * 109.46606 * 302.91967 * 24 23 22 27 27 O 1.42897 * 109.47061 * 62.91900 * 24 23 22 28 28 H 1.09001 * 109.46885 * 187.64446 * 1 2 3 29 29 H 1.09005 * 109.47393 * 307.64641 * 1 2 3 30 30 H 1.09008 * 109.47403 * 67.64437 * 1 2 3 31 31 H 1.08991 * 109.47404 * 240.00027 * 2 1 3 32 32 H 1.09001 * 109.46933 * 119.99360 * 2 1 3 33 33 H 1.09002 * 109.46881 * 61.35230 * 8 7 6 34 34 H 1.08995 * 109.47552 * 181.35020 * 8 7 6 35 35 H 0.96998 * 119.99909 * 179.97438 * 12 11 9 36 36 H 1.09007 * 109.47021 * 316.17574 * 17 7 6 37 37 H 1.09003 * 109.47578 * 76.17265 * 17 7 6 38 38 H 1.09004 * 109.47196 * 294.54417 * 18 17 7 39 39 H 1.09007 * 109.46906 * 54.53776 * 18 17 7 40 40 H 1.09002 * 109.47343 * 304.99772 * 19 18 17 41 41 H 1.09003 * 109.47040 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47635 * 299.99598 * 20 19 18 43 43 H 1.08997 * 109.47148 * 60.00373 * 20 19 18 44 44 H 1.08999 * 109.47432 * 60.00037 * 21 19 18 45 45 H 1.09003 * 109.47049 * 180.02562 * 21 19 18 46 46 H 1.08997 * 109.47484 * 299.99796 * 21 19 18 47 47 H 1.09001 * 109.47134 * 37.76964 * 23 22 6 48 48 H 1.08994 * 109.47123 * 157.77072 * 23 22 6 49 49 H 1.09002 * 109.47728 * 59.99614 * 25 24 23 50 50 H 1.09002 * 109.46927 * 180.02562 * 25 24 23 51 51 H 1.09006 * 109.46816 * 299.99744 * 25 24 23 52 52 H 1.08994 * 109.47180 * 56.55595 * 26 24 23 53 53 H 1.09002 * 109.46457 * 176.55042 * 26 24 23 54 54 H 1.08994 * 109.47390 * 296.54717 * 26 24 23 55 55 H 0.96705 * 113.99785 * 60.00328 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.0990 2.2164 1.0298 5 7 2.5761 3.3561 0.6760 6 6 2.8411 3.3490 -0.6092 7 7 3.3665 4.3973 -1.3478 8 6 4.7684 4.1401 -1.7033 9 6 5.5777 3.9452 -0.4470 10 1 5.0868 3.9326 0.5150 11 6 6.9446 3.7831 -0.5257 12 7 7.6387 3.5165 0.5591 13 14 7.8108 3.9424 -2.1732 14 1 8.3084 5.3317 -2.3385 15 1 8.9550 2.9973 -2.2241 16 1 6.8573 3.6247 -3.2663 17 6 3.2314 5.6696 -0.6259 18 6 3.4374 6.8323 -1.5988 19 6 3.1631 8.1542 -0.8790 20 6 4.2036 8.3599 0.2236 21 6 3.2470 9.3074 -1.8810 22 7 2.5027 2.1142 -1.0807 23 6 2.6193 1.6312 -2.4589 24 6 1.4102 2.1035 -3.2688 25 6 1.4950 1.5386 -4.6882 26 6 0.1249 1.6116 -2.6002 27 8 1.4021 3.5313 -3.3240 28 1 -0.3633 -1.0186 0.1367 29 1 -0.3634 0.6277 0.8137 30 1 -0.3634 0.3909 -0.9505 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 4.8286 3.2415 -2.3173 34 1 5.1632 4.9888 -2.2619 35 1 8.6003 3.4021 0.5037 36 1 2.2355 5.7346 -0.1875 37 1 3.9802 5.7202 0.1645 38 1 4.4646 6.8234 -1.9634 39 1 2.7523 6.7277 -2.4402 40 1 2.1666 8.1279 -0.4380 41 1 4.0085 9.3020 0.7362 42 1 4.1439 7.5384 0.9375 43 1 5.2000 8.3864 -0.2174 44 1 2.5057 9.1609 -2.6666 45 1 3.0520 10.2493 -1.3681 46 1 4.2434 9.3338 -2.3221 47 1 3.5322 2.0248 -2.9058 48 1 2.6545 0.5418 -2.4603 49 1 1.5011 0.4494 -4.6461 50 1 0.6338 1.8754 -5.2653 51 1 2.4107 1.8889 -5.1645 52 1 0.0942 1.9636 -1.5691 53 1 -0.7378 1.9991 -3.1422 54 1 0.1026 0.5220 -2.6130 55 1 2.1889 3.9134 -3.7367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401448333.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:18 Heat of formation + Delta-G solvation = -1.003934 kcal Electronic energy + Delta-G solvation = -32948.216459 eV Core-core repulsion = 29020.647991 eV Total energy + Delta-G solvation = -3927.568468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.82720 -39.36248 -39.25261 -36.82932 -35.68408 -34.73662 -34.26379 -32.96530 -30.59501 -30.42669 -28.45386 -28.24369 -27.97049 -27.61535 -25.29379 -24.38817 -23.68188 -21.85870 -21.27325 -20.93523 -20.64398 -19.19437 -18.32716 -17.67074 -17.12662 -16.67005 -16.58082 -16.27180 -16.13398 -15.74396 -15.38764 -15.15084 -15.02914 -14.66773 -14.49740 -14.29093 -14.17620 -13.69496 -13.52693 -13.41552 -13.28112 -13.21265 -13.06555 -12.99620 -12.86131 -12.70341 -12.54024 -12.45871 -12.35835 -12.31867 -12.22549 -12.16701 -11.91133 -11.78035 -11.72930 -11.52852 -11.52175 -11.35067 -11.24033 -11.10876 -10.79787 -10.49873 -10.26020 -9.03516 -8.32464 -6.39999 1.04639 1.31114 1.33789 1.43517 1.50017 2.07848 2.29589 3.01415 3.04659 3.30864 3.51303 3.61173 3.68510 3.96442 4.00280 4.07967 4.09761 4.12511 4.15763 4.25627 4.34062 4.39645 4.43716 4.62854 4.65988 4.70581 4.75591 4.80520 4.83721 4.84788 4.87740 4.88999 4.93419 4.98853 5.00413 5.02779 5.04995 5.06416 5.14256 5.20675 5.23598 5.25055 5.29198 5.34705 5.37435 5.41095 5.43170 5.55575 5.57890 5.84570 5.95525 6.20680 6.54032 6.72190 6.90808 7.24434 8.01945 8.84823 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008716 B = 0.005081 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.713732 B = 5509.293070 C = 6423.923190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C 0.170 3.830 4 N -0.341 5.341 5 N -0.382 5.382 6 C 0.402 3.598 7 N -0.430 5.430 8 C 0.170 3.830 9 C -0.554 4.554 10 H 0.030 0.970 11 C 0.012 3.988 12 N -0.947 5.947 13 Si 0.947 3.053 14 H -0.266 1.266 15 H -0.288 1.288 16 H -0.229 1.229 17 C 0.087 3.913 18 C -0.095 4.095 19 C -0.090 4.090 20 C -0.147 4.147 21 C -0.137 4.137 22 N -0.463 5.463 23 C 0.072 3.928 24 C 0.117 3.883 25 C -0.166 4.166 26 C -0.143 4.143 27 O -0.561 6.561 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.265 0.735 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.090 0.910 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.067 0.933 52 H 0.038 0.962 53 H 0.068 0.932 54 H 0.102 0.898 55 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -3.444 -15.647 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.068 4.068 3 C -0.099 4.099 4 N -0.180 5.180 5 N -0.225 5.225 6 C 0.044 3.956 7 N -0.153 5.153 8 C 0.044 3.956 9 C -0.592 4.592 10 H 0.049 0.951 11 C -0.186 4.186 12 N -0.587 5.587 13 Si 0.769 3.231 14 H -0.191 1.191 15 H -0.214 1.214 16 H -0.152 1.152 17 C -0.041 4.041 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.205 4.205 21 C -0.194 4.194 22 N -0.156 5.156 23 C -0.050 4.050 24 C 0.075 3.925 25 C -0.224 4.224 26 C -0.200 4.200 27 O -0.368 6.368 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.144 0.856 49 H 0.107 0.893 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.057 0.943 53 H 0.087 0.913 54 H 0.121 0.879 55 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -14.460 -3.009 -14.322 20.574 hybrid contribution 2.313 -0.249 -0.220 2.337 sum -12.147 -3.258 -14.542 19.226 Atomic orbital electron populations 1.22106 0.92286 1.03691 1.03212 1.20152 0.97716 0.83797 1.05160 1.25395 1.02578 0.99102 0.82817 1.73699 1.19468 0.98701 1.26134 1.74488 1.22195 1.16484 1.09314 1.22462 0.98530 0.86334 0.88267 1.59315 1.18433 0.99099 1.38450 1.20231 0.82624 0.97694 0.95033 1.21867 0.93291 1.50204 0.93883 0.95136 1.25973 0.98208 0.93635 1.00757 1.70140 1.07615 1.49514 1.31424 0.85737 0.78738 0.78757 0.79882 1.19068 1.21407 1.15162 1.21837 0.99651 0.86938 0.95632 1.21542 1.01922 0.91975 0.97809 1.21042 0.98937 0.94719 0.96198 1.21859 0.99066 1.00972 0.98571 1.21756 1.02119 0.96999 0.98521 1.45995 1.48541 1.10618 1.10452 1.23062 1.01401 1.02583 0.77964 1.21631 0.93702 0.81998 0.95134 1.22370 1.03546 1.02897 0.93596 1.22096 0.95985 1.02145 0.99787 1.86588 1.46756 1.18966 1.84476 0.88755 0.94336 0.90294 0.87493 0.89006 0.94670 0.92313 0.92634 0.92977 0.95485 0.92424 0.89912 0.91411 0.91470 0.95098 0.93388 0.91634 0.91795 0.92743 0.89134 0.85557 0.89307 0.90716 0.91409 0.94287 0.91337 0.87911 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.44 71.98 0.68 -2.28 16 2 C -0.03 -0.68 6.28 29.85 0.19 -0.49 16 3 C 0.17 6.23 6.09 137.64 0.84 7.07 16 4 N -0.34 -16.19 12.18 -49.53 -0.60 -16.80 16 5 N -0.38 -19.73 10.89 -58.01 -0.63 -20.37 16 6 C 0.40 17.84 5.24 260.11 1.36 19.20 16 7 N -0.43 -17.51 3.91 -710.33 -2.78 -20.29 16 8 C 0.17 7.50 3.94 85.56 0.34 7.83 16 9 C -0.55 -31.51 8.06 25.60 0.21 -31.30 16 10 H 0.03 2.08 6.68 -2.91 -0.02 2.06 16 11 C 0.01 0.71 5.47 84.65 0.46 1.17 16 12 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 13 Si 0.95 41.47 27.42 68.60 1.88 43.35 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.23 -8.58 6.65 99.48 0.66 -7.92 16 17 C 0.09 3.59 3.94 86.30 0.34 3.93 16 18 C -0.09 -3.01 4.63 30.59 0.14 -2.87 16 19 C -0.09 -2.51 2.92 -10.80 -0.03 -2.54 16 20 C -0.15 -4.62 8.95 71.98 0.64 -3.97 16 21 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 22 N -0.46 -16.51 2.24 -514.84 -1.15 -17.67 16 23 C 0.07 1.79 5.22 86.38 0.45 2.24 16 24 C 0.12 2.37 1.17 -10.79 -0.01 2.36 16 25 C -0.17 -2.12 8.81 71.98 0.63 -1.48 16 26 C -0.14 -2.80 6.84 71.98 0.49 -2.30 16 27 O -0.56 -14.59 11.78 -148.98 -1.76 -16.35 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 0.94 8.13 -2.38 -0.02 0.92 16 30 H 0.08 1.36 3.60 -2.38 -0.01 1.35 16 31 H 0.11 1.78 6.87 -2.39 -0.02 1.77 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.47 5.76 -2.39 -0.01 1.46 16 34 H 0.06 2.42 5.66 -2.39 -0.01 2.41 16 35 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.05 2.24 7.79 -2.38 -0.02 2.22 16 37 H 0.03 1.35 5.35 -2.39 -0.01 1.34 16 38 H 0.06 1.92 6.90 -2.39 -0.02 1.91 16 39 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.03 1.14 6.69 -2.39 -0.02 1.13 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 2.38 6.15 -2.39 -0.01 2.37 16 48 H 0.13 2.25 6.88 -2.39 -0.02 2.23 16 49 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.04 1.04 5.18 -2.39 -0.01 1.03 16 53 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.10 1.32 6.96 -2.39 -0.02 1.30 16 55 H 0.38 8.80 8.91 -74.05 -0.66 8.14 16 Total: -1.00 -82.45 411.08 2.83 -79.62 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.18 Total: 34.18 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 7.39 Total: -5.73 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -4.87 Total: -135.08 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.76 Total: -16.35 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.88 Total: 43.35 kcal Total: -82.45 2.83 -79.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401448333.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.614 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds