Wall clock time and date at job start Tue Mar 31 2020 23:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47484 * 2 1 4 4 C 1.52991 * 109.47495 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46942 * 299.99943 * 3 2 1 6 6 C 1.53001 * 109.47130 * 59.99216 * 3 2 1 7 7 N 1.46497 * 109.47508 * 204.65103 * 6 3 2 8 8 C 1.36737 * 127.13779 * 66.67644 * 7 6 3 9 9 C 1.50703 * 126.34670 * 0.02562 * 8 7 6 10 10 C 1.53008 * 109.47019 * 89.99273 * 9 8 7 11 11 C 1.52998 * 109.46751 * 175.00094 * 10 9 8 12 12 C 1.52991 * 109.47339 * 295.00325 * 10 9 8 13 13 N 1.30291 * 107.31008 * 179.97438 * 8 7 6 14 14 N 1.28528 * 110.05058 * 0.02562 * 13 8 7 15 15 C 1.31223 * 109.86072 * 359.74263 * 14 13 8 16 16 N 1.38584 * 126.47111 * 180.25961 * 15 14 13 17 17 C 1.46901 * 110.99477 * 230.24089 * 16 15 14 18 18 C 1.46893 * 111.00342 * 354.18968 * 16 15 14 19 19 H 1.09000 * 109.47587 * 300.00515 * 18 16 15 20 20 C 1.53008 * 109.46711 * 60.00141 * 18 16 15 21 21 C 1.50697 * 109.47454 * 179.97438 * 18 16 15 22 22 H 1.07999 * 119.99754 * 0.02562 * 21 18 16 23 23 C 1.37872 * 120.00208 * 180.02562 * 21 18 16 24 24 N 1.31518 * 120.00288 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99989 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47036 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47113 * 120.00095 * 25 23 21 28 28 H 1.48500 * 109.47319 * 240.00122 * 25 23 21 29 29 H 1.08997 * 109.47281 * 300.00812 * 1 2 3 30 30 H 1.09005 * 109.46444 * 60.00126 * 1 2 3 31 31 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46939 * 120.00040 * 2 1 3 33 33 H 1.09004 * 109.47611 * 239.99325 * 2 1 3 34 34 H 1.08997 * 109.47403 * 83.30034 * 4 3 2 35 35 H 1.09000 * 109.47323 * 203.30252 * 4 3 2 36 36 H 1.09008 * 109.47270 * 323.29797 * 4 3 2 37 37 H 0.96702 * 113.99999 * 299.99590 * 5 3 2 38 38 H 1.09001 * 109.47472 * 324.65460 * 6 3 2 39 39 H 1.09007 * 109.46965 * 84.65408 * 6 3 2 40 40 H 1.08998 * 109.47245 * 209.99735 * 9 8 7 41 41 H 1.09006 * 109.47069 * 330.00111 * 9 8 7 42 42 H 1.08997 * 109.46962 * 55.00326 * 10 9 8 43 43 H 1.08997 * 109.47198 * 60.00377 * 11 10 9 44 44 H 1.08999 * 109.46965 * 179.97438 * 11 10 9 45 45 H 1.09000 * 109.47480 * 300.00121 * 11 10 9 46 46 H 1.08996 * 109.47279 * 59.99686 * 12 10 9 47 47 H 1.08999 * 109.47271 * 180.02562 * 12 10 9 48 48 H 1.09008 * 109.47512 * 299.99870 * 12 10 9 49 49 H 1.08993 * 109.47590 * 66.49921 * 17 16 15 50 50 H 1.09001 * 109.46795 * 186.49990 * 17 16 15 51 51 H 1.09008 * 109.47033 * 306.49446 * 17 16 15 52 52 H 1.09000 * 109.47355 * 299.99643 * 20 18 16 53 53 H 1.08999 * 109.47115 * 60.00319 * 20 18 16 54 54 H 1.09007 * 109.47105 * 179.97438 * 20 18 16 55 55 H 0.97000 * 120.00198 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 1.5638 2.1161 -1.1668 6 6 1.5300 2.1638 1.2491 7 7 1.4887 3.6064 0.9975 8 6 0.6741 4.2685 0.1212 9 6 -0.3630 3.6469 -0.7783 10 6 -1.7050 3.5894 -0.0456 11 6 -2.7849 3.0743 -0.9993 12 6 -1.5914 2.6462 1.1535 13 7 0.9600 5.5367 0.2088 14 7 1.8930 5.7194 1.0738 15 6 2.2515 4.5686 1.5926 16 7 3.2232 4.3682 2.5601 17 6 4.1634 3.3159 2.1518 18 6 3.9318 5.6191 2.8617 19 1 4.4113 5.9923 1.9568 20 6 2.9342 6.6589 3.3763 21 6 4.9776 5.3624 3.9159 22 1 5.1036 4.3693 4.3210 23 6 5.7736 6.3955 4.3632 24 7 5.6199 7.6051 3.8703 25 14 7.0706 6.0772 5.6694 26 1 7.0425 4.6436 6.0558 27 1 8.4113 6.4175 5.1291 28 1 6.7894 6.9172 6.8612 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.9338 1.3224 -1.0198 35 1 3.9332 2.3863 0.4072 36 1 3.9331 0.6186 0.6151 37 1 1.8492 1.7125 -1.9980 38 1 0.5282 1.8083 1.4905 39 1 2.1991 1.9599 2.0852 40 1 -0.4676 4.2477 -1.6817 41 1 -0.0524 2.6372 -1.0473 42 1 -1.9726 4.5874 0.3012 43 1 -2.5173 2.0762 -1.3461 44 1 -3.7408 3.0329 -0.4773 45 1 -2.8658 3.7463 -1.8536 46 1 -0.8221 3.0131 1.8328 47 1 -2.5476 2.6049 1.6752 48 1 -1.3238 1.6480 0.8067 49 1 4.7342 3.6542 1.2871 50 1 4.8446 3.0982 2.9744 51 1 3.6088 2.4144 1.8911 52 1 2.1774 6.8447 2.6141 53 1 2.4547 6.2857 4.2812 54 1 3.4601 7.5871 3.6005 55 1 6.1797 8.3319 4.1852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411727326.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:09 Heat of formation + Delta-G solvation = 51.060657 kcal Electronic energy + Delta-G solvation = -33403.169267 eV Core-core repulsion = 29477.858488 eV Total energy + Delta-G solvation = -3925.310778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.92882 -40.05693 -39.01662 -37.18008 -35.74243 -34.68465 -34.02973 -31.69487 -31.46953 -30.88499 -28.66145 -28.05869 -27.61101 -26.89101 -26.24744 -24.33700 -23.57613 -22.44237 -21.32178 -21.24459 -20.41378 -18.72364 -18.13220 -17.53658 -17.17460 -17.04888 -16.57451 -16.36824 -16.00661 -15.63311 -15.51585 -15.30424 -14.88656 -14.83871 -14.62040 -14.39816 -14.32629 -13.84815 -13.60081 -13.37792 -13.19167 -13.02502 -12.94747 -12.83645 -12.80431 -12.69378 -12.54565 -12.43336 -12.25495 -12.06386 -12.01020 -11.99064 -11.81561 -11.77845 -11.71669 -11.65313 -11.32694 -11.23608 -10.81833 -10.73965 -10.59628 -10.49985 -10.29418 -8.87229 -8.13597 -6.30292 1.04465 1.41017 1.43575 1.48331 1.56551 2.06975 2.40142 2.98482 3.12483 3.17376 3.45051 3.58821 3.71176 3.84856 3.92034 4.01993 4.09261 4.11912 4.20314 4.38425 4.41548 4.42687 4.47899 4.60324 4.66402 4.72737 4.75353 4.77752 4.79762 4.82510 4.87561 4.93814 4.99839 5.02480 5.04548 5.13627 5.18793 5.20553 5.25140 5.26741 5.32724 5.35616 5.39847 5.43881 5.49068 5.49869 5.62968 5.65936 5.74474 5.99648 6.13022 6.19257 6.64058 6.80105 6.85432 7.38818 8.07450 8.93248 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.003772 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.623606 B = 7420.995230 C = 8428.817086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 C 0.123 3.877 4 C -0.213 4.213 5 O -0.550 6.550 6 C 0.086 3.914 7 N -0.463 5.463 8 C 0.220 3.780 9 C -0.036 4.036 10 C -0.091 4.091 11 C -0.135 4.135 12 C -0.166 4.166 13 N -0.358 5.358 14 N -0.369 5.369 15 C 0.353 3.647 16 N -0.454 5.454 17 C 0.018 3.982 18 C 0.245 3.755 19 H -0.032 1.032 20 C -0.131 4.131 21 C -0.528 4.528 22 H 0.074 0.926 23 C 0.010 3.990 24 N -0.919 5.919 25 Si 0.972 3.028 26 H -0.257 1.257 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.390 0.610 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.155 0.845 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.023 0.977 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.018 0.982 50 H 0.088 0.912 51 H 0.112 0.888 52 H 0.051 0.949 53 H 0.016 0.984 54 H 0.058 0.942 55 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -23.634 -11.169 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.174 4.174 3 C 0.082 3.918 4 C -0.270 4.270 5 O -0.360 6.360 6 C -0.036 4.036 7 N -0.159 5.159 8 C -0.049 4.049 9 C -0.075 4.075 10 C -0.111 4.111 11 C -0.192 4.192 12 C -0.222 4.222 13 N -0.196 5.196 14 N -0.213 5.213 15 C -0.004 4.004 16 N -0.178 5.178 17 C -0.128 4.128 18 C 0.140 3.860 19 H -0.014 1.014 20 C -0.190 4.190 21 C -0.566 4.566 22 H 0.092 0.908 23 C -0.189 4.189 24 N -0.558 5.558 25 Si 0.797 3.203 26 H -0.181 1.181 27 H -0.206 1.206 28 H -0.208 1.208 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.242 0.758 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.172 0.828 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.037 0.963 50 H 0.107 0.893 51 H 0.129 0.871 52 H 0.070 0.930 53 H 0.036 0.964 54 H 0.077 0.923 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.747 -21.742 -10.535 27.317 hybrid contribution 1.727 -0.258 0.287 1.769 sum -11.020 -22.000 -10.247 26.654 Atomic orbital electron populations 1.22170 0.94872 1.02846 1.02594 1.22156 0.97271 0.93188 1.04830 1.21493 0.92765 0.92387 0.85179 1.23172 0.95752 1.03598 1.04442 1.86669 1.74662 1.58082 1.16596 1.22926 1.06165 0.75227 0.99236 1.45978 1.29388 1.08152 1.32342 1.25132 0.96708 0.88132 0.94948 1.20899 0.87967 1.04766 0.93848 1.21104 0.94754 0.98771 0.96497 1.21737 0.97121 1.01955 0.98437 1.22378 1.01342 1.01107 0.97417 1.73842 1.13207 1.16205 1.16308 1.74567 1.14298 1.21338 1.11053 1.23162 0.97373 0.85959 0.93946 1.59038 1.13658 1.12821 1.32270 1.23304 0.95618 0.93651 1.00259 1.18924 0.90466 0.82868 0.93785 1.01390 1.21845 0.98390 1.00476 0.98282 1.21405 1.16834 0.96243 1.22142 0.90771 1.25854 0.99644 0.94551 0.98847 1.70116 1.40249 1.01336 1.44118 0.85296 0.77992 0.78873 0.78180 1.18056 1.20638 1.20832 0.92408 0.91183 0.90979 0.89834 0.88821 0.90430 0.92838 0.89252 0.75808 0.86052 0.87262 0.90117 0.82829 0.94251 0.90540 0.92024 0.92383 0.95761 0.91882 0.88624 0.96327 0.89296 0.87061 0.93027 0.96435 0.92322 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.47 71.98 0.61 -0.60 16 2 C -0.14 -1.03 5.06 30.59 0.15 -0.87 16 3 C 0.12 1.81 0.93 -10.80 -0.01 1.80 16 4 C -0.21 -3.58 8.04 71.98 0.58 -3.00 16 5 O -0.55 -8.31 6.64 -148.98 -0.99 -9.30 16 6 C 0.09 1.91 4.56 86.38 0.39 2.31 16 7 N -0.46 -15.51 2.41 -514.84 -1.24 -16.75 16 8 C 0.22 7.63 5.56 137.64 0.76 8.40 16 9 C -0.04 -0.85 4.45 29.85 0.13 -0.71 16 10 C -0.09 -1.90 2.91 -10.79 -0.03 -1.93 16 11 C -0.14 -1.85 9.19 71.98 0.66 -1.18 16 12 C -0.17 -3.14 7.64 71.98 0.55 -2.59 16 13 N -0.36 -16.49 12.18 -49.54 -0.60 -17.10 16 14 N -0.37 -19.10 8.81 -58.00 -0.51 -19.61 16 15 C 0.35 15.94 6.93 260.11 1.80 17.75 16 16 N -0.45 -21.07 4.66 -711.00 -3.32 -24.39 16 17 C 0.02 0.65 7.24 127.69 0.92 1.58 16 18 C 0.25 13.78 1.76 44.17 0.08 13.86 16 19 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 20 C -0.13 -7.66 8.77 71.98 0.63 -7.02 16 21 C -0.53 -29.60 7.95 25.60 0.20 -29.40 16 22 H 0.07 3.91 6.40 -2.91 -0.02 3.89 16 23 C 0.01 0.59 5.30 84.65 0.45 1.03 16 24 N -0.92 -55.86 11.32 21.45 0.24 -55.61 16 25 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.06 0.54 3.70 -2.39 -0.01 0.53 16 30 H 0.07 0.48 6.86 -2.38 -0.02 0.46 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.55 8.12 -2.39 -0.02 0.54 16 33 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.08 1.10 8.03 -2.39 -0.02 1.08 16 35 H 0.05 1.36 3.59 -2.39 -0.01 1.35 16 36 H 0.09 1.13 7.92 -2.38 -0.02 1.11 16 37 H 0.39 2.76 8.97 -24.16 -0.22 2.54 16 38 H 0.12 2.25 2.83 -2.39 -0.01 2.24 16 39 H 0.11 2.52 5.46 -2.38 -0.01 2.51 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.16 2.65 3.66 15.56 0.06 2.71 16 42 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.02 0.60 5.72 -2.39 -0.01 0.59 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.10 1.27 3.93 -2.38 -0.01 1.26 16 49 H 0.02 0.74 7.24 -2.39 -0.02 0.72 16 50 H 0.09 3.34 6.33 -2.39 -0.02 3.32 16 51 H 0.11 3.13 2.12 -2.38 -0.01 3.12 16 52 H 0.05 3.03 5.22 -2.39 -0.01 3.01 16 53 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.06 3.67 6.07 -2.38 -0.01 3.65 16 55 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -80.72 383.52 4.28 -76.44 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.78 Total: 21.07 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 7.89 Total: -0.58 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -5.43 Total: -133.46 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.99 Total: -9.30 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -80.72 4.28 -76.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411727326.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.500 kcal (2) G-P(sol) polarization free energy of solvation -80.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds