Wall clock time and date at job start Tue Mar 31 2020 22:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36929 * 120.00240 * 2 1 4 4 H 1.08005 * 120.00294 * 202.90950 * 3 2 1 5 5 C 1.38813 * 120.00285 * 22.90999 * 3 2 1 6 6 N 1.31619 * 119.99573 * 13.14912 * 5 3 2 7 7 Si 1.86796 * 120.00589 * 193.14478 * 5 3 2 8 8 H 1.48506 * 109.46908 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46989 * 120.00064 * 7 5 3 10 10 H 1.48490 * 109.47489 * 240.00373 * 7 5 3 11 11 C 1.46501 * 119.99698 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47420 * 89.99869 * 11 2 1 13 13 O 1.42895 * 109.47184 * 65.00040 * 12 11 2 14 14 C 1.42903 * 114.00272 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47487 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46719 * 65.00543 * 15 14 13 17 17 C 1.46507 * 119.99759 * 269.99925 * 16 15 14 18 18 C 1.34778 * 120.00362 * 90.00039 * 16 15 14 19 19 O 1.21286 * 119.99537 * 359.97438 * 18 16 15 20 20 C 1.50692 * 120.00164 * 180.02562 * 18 16 15 21 21 H 1.08994 * 112.95361 * 48.58081 * 20 18 16 22 22 C 1.53970 * 113.66444 * 277.16724 * 20 18 16 23 23 C 1.53225 * 86.25253 * 218.96617 * 22 20 18 24 24 H 1.09002 * 111.34484 * 274.74588 * 23 22 20 25 25 C 1.50511 * 115.71392 * 147.24512 * 23 22 20 26 26 C 1.51633 * 114.39146 * 290.08831 * 25 23 22 27 27 C 1.52601 * 111.07769 * 313.08929 * 26 25 23 28 28 C 1.54280 * 109.52552 * 63.52312 * 27 26 25 29 29 C 1.52540 * 87.67850 * 26.88932 * 23 22 20 30 30 H 1.08999 * 113.95430 * 218.48758 * 29 23 22 31 31 H 1.08995 * 109.47126 * 275.12931 * 1 2 3 32 32 H 1.09002 * 109.46858 * 35.12476 * 1 2 3 33 33 H 1.08998 * 109.47441 * 155.12272 * 1 2 3 34 34 H 0.97004 * 120.00177 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47273 * 329.99495 * 11 2 1 36 36 H 1.09006 * 109.46942 * 210.00076 * 11 2 1 37 37 H 1.08994 * 109.47525 * 304.99649 * 12 11 2 38 38 H 1.09001 * 109.46823 * 184.99707 * 12 11 2 39 39 H 1.09006 * 109.47000 * 59.99926 * 14 13 12 40 40 H 1.09000 * 109.47460 * 300.00089 * 14 13 12 41 41 H 1.08997 * 109.47418 * 305.00825 * 15 14 13 42 42 H 1.09002 * 109.47201 * 184.99770 * 15 14 13 43 43 H 1.08998 * 109.46620 * 269.99794 * 17 16 15 44 44 H 1.08991 * 109.47264 * 30.00107 * 17 16 15 45 45 H 1.08996 * 109.46665 * 149.99995 * 17 16 15 46 46 H 1.09003 * 113.74194 * 333.30273 * 22 20 18 47 47 H 1.08996 * 113.74697 * 104.51797 * 22 20 18 48 48 H 1.08991 * 108.50015 * 51.36401 * 25 23 22 49 49 H 1.08998 * 108.49428 * 168.82158 * 25 23 22 50 50 H 1.09004 * 109.15485 * 73.50476 * 26 25 23 51 51 H 1.09000 * 109.15668 * 192.68156 * 26 25 23 52 52 H 1.08995 * 109.57359 * 183.49959 * 27 26 25 53 53 H 1.08992 * 109.57765 * 303.89294 * 27 26 25 54 54 H 1.08999 * 110.37224 * 177.34805 * 28 27 26 55 55 H 1.09000 * 109.32750 * 56.76632 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1658 1.2227 -0.3641 5 6 1.5378 2.3406 0.4680 6 7 0.4118 2.2607 1.1447 7 14 2.3125 4.0079 0.1374 8 1 3.5655 3.8264 -0.6389 9 1 1.3664 4.8479 -0.6400 10 1 2.6214 4.6748 1.4277 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 8 3.3209 -0.7718 -2.0817 14 6 3.6249 -1.0927 -3.4406 15 6 4.5559 -0.0261 -4.0206 16 7 5.8403 -0.0642 -3.3169 17 6 6.0450 0.7574 -2.1213 18 6 6.8335 -0.8550 -3.7693 19 8 6.6638 -1.5355 -4.7588 20 6 8.1544 -0.8945 -3.0450 21 1 8.0453 -1.0294 -1.9690 22 6 9.1052 0.2534 -3.4307 23 6 10.2286 -0.7858 -3.3544 24 1 10.5981 -0.8965 -2.3349 25 6 11.3704 -0.5849 -4.3143 26 6 11.0196 -0.8412 -5.7670 27 6 10.2495 -2.1494 -5.9231 28 6 8.9024 -2.0468 -5.1781 29 6 9.1850 -1.8472 -3.6876 30 1 9.3193 -2.7847 -3.1479 31 1 -0.3633 0.0919 1.0235 32 1 -0.3633 0.8406 -0.5913 33 1 -0.3634 -0.9323 -0.4323 34 1 -0.0160 3.0677 1.4715 35 1 1.6083 -2.0286 0.5130 36 1 3.1499 -1.1387 0.5134 37 1 1.5061 -1.7542 -1.9823 38 1 2.9180 -2.6954 -1.4448 39 1 2.7030 -1.1245 -4.0214 40 1 4.1149 -2.0654 -3.4834 41 1 4.1030 0.9576 -3.8972 42 1 4.7166 -0.2218 -5.0808 43 1 6.4406 1.7304 -2.4126 44 1 5.0943 0.8914 -1.6053 45 1 6.7525 0.2617 -1.4566 46 1 8.9366 0.6447 -4.4340 47 1 9.1770 1.0363 -2.6757 48 1 11.7250 0.4414 -4.2200 49 1 12.1821 -1.2549 -4.0311 50 1 10.4071 -0.0191 -6.1375 51 1 11.9374 -0.8945 -6.3526 52 1 10.0645 -2.3404 -6.9801 53 1 10.8303 -2.9680 -5.4982 54 1 8.3202 -2.9573 -5.3196 55 1 8.3430 -1.1928 -5.5601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479679306.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:27 Heat of formation + Delta-G solvation = -52.636239 kcal Electronic energy + Delta-G solvation = -31333.966979 eV Core-core repulsion = 27371.866814 eV Total energy + Delta-G solvation = -3962.100164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.23334 -39.90559 -38.84021 -37.20234 -36.35733 -35.15831 -33.43519 -31.92551 -31.46361 -29.63225 -28.00719 -27.82306 -27.12024 -25.95378 -24.85700 -24.12901 -23.38760 -22.11641 -22.01480 -19.83194 -18.75210 -18.65574 -18.21213 -17.48624 -17.24559 -16.98286 -16.76911 -16.51600 -16.07835 -15.59510 -15.45681 -15.35976 -14.98638 -14.87376 -14.65155 -14.44260 -14.03232 -13.78511 -13.65167 -13.52088 -13.33386 -13.22163 -13.02335 -12.97962 -12.83257 -12.66472 -12.64033 -12.50667 -12.48483 -12.30613 -12.15336 -11.95207 -11.80702 -11.74991 -11.69248 -11.48223 -11.29287 -10.83676 -10.68132 -10.55346 -10.41133 -10.09812 -9.55831 -8.68372 -7.72298 -5.19149 1.48873 1.50690 1.60866 1.63981 2.09571 2.58395 2.90857 3.42201 3.42656 3.59211 3.63171 3.75089 3.76082 3.93106 4.13236 4.16189 4.20980 4.24049 4.30527 4.36159 4.45308 4.50321 4.52091 4.54450 4.60147 4.62661 4.63183 4.69829 4.74530 4.79993 4.83668 4.84880 4.88256 4.90266 4.94643 4.99967 5.08940 5.14603 5.17087 5.20201 5.26338 5.34210 5.37929 5.39228 5.50863 5.58771 5.64700 5.71711 5.72374 5.83588 6.38075 6.47351 6.54201 7.23208 7.25602 7.97012 8.41065 9.32026 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002716 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.984481 B =10306.496320 C =11228.617563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.224 4.224 4 H 0.076 0.924 5 C -0.066 4.066 6 N -0.949 5.949 7 Si 0.960 3.040 8 H -0.258 1.258 9 H -0.300 1.300 10 H -0.296 1.296 11 C 0.148 3.852 12 C 0.054 3.946 13 O -0.379 6.379 14 C 0.051 3.949 15 C 0.121 3.879 16 N -0.604 5.604 17 C 0.082 3.918 18 C 0.517 3.483 19 O -0.569 6.569 20 C -0.140 4.140 21 H 0.124 0.876 22 C -0.111 4.111 23 C -0.090 4.090 24 H 0.100 0.900 25 C -0.104 4.104 26 C -0.114 4.114 27 C -0.122 4.122 28 C -0.084 4.084 29 C -0.082 4.082 30 H 0.078 0.922 31 H 0.005 0.995 32 H 0.011 0.989 33 H 0.028 0.972 34 H 0.242 0.758 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.048 0.952 51 H 0.071 0.929 52 H 0.055 0.945 53 H 0.063 0.937 54 H 0.046 0.954 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 -7.658 -11.215 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.354 4.354 4 H 0.094 0.906 5 C -0.260 4.260 6 N -0.598 5.598 7 Si 0.790 3.210 8 H -0.182 1.182 9 H -0.227 1.227 10 H -0.224 1.224 11 C 0.022 3.978 12 C -0.025 4.025 13 O -0.298 6.298 14 C -0.027 4.027 15 C -0.002 4.002 16 N -0.336 5.336 17 C -0.061 4.061 18 C 0.307 3.693 19 O -0.449 6.449 20 C -0.161 4.161 21 H 0.142 0.858 22 C -0.149 4.149 23 C -0.109 4.109 24 H 0.118 0.882 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.121 4.121 29 C -0.100 4.100 30 H 0.097 0.903 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.074 0.926 53 H 0.082 0.918 54 H 0.065 0.935 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.151 -7.712 -11.553 25.305 hybrid contribution -0.799 0.756 -0.043 1.101 sum 20.352 -6.956 -11.596 24.435 Atomic orbital electron populations 1.20520 0.83161 0.95606 0.97552 1.44112 1.01822 1.01929 1.85891 1.19540 0.98150 0.86020 1.31737 0.90635 1.25758 0.98956 1.01690 0.99548 1.70246 1.21348 1.26953 1.41245 0.85275 0.78268 0.80552 0.76930 1.18222 1.22740 1.22371 1.20956 0.96103 0.87749 0.92969 1.23212 0.92152 0.91316 0.95839 1.88022 1.67268 1.50095 1.24428 1.22833 0.97805 0.97766 0.84322 1.21448 0.82713 0.99458 0.96562 1.47933 1.12759 1.43965 1.28924 1.21898 1.03174 0.94684 0.86343 1.21046 0.85926 0.78104 0.84231 1.90667 1.82443 1.43844 1.27966 1.23100 0.90169 1.01551 1.01268 0.85816 1.22839 0.94251 0.95797 1.02010 1.21578 0.93590 0.94892 1.00791 0.88161 1.20545 0.97388 1.02383 0.93859 1.21113 1.00025 0.97046 0.96967 1.21728 0.96390 0.98143 0.99746 1.21633 0.95380 1.01812 0.93281 1.22249 0.94161 0.97262 0.96378 0.90317 0.97648 0.97022 0.95354 0.94825 0.91199 0.93277 0.94848 0.92830 0.92690 0.94325 0.89871 0.88672 0.91687 0.91694 0.89616 0.90897 0.89240 0.91055 0.91395 0.93296 0.91072 0.92576 0.91846 0.93521 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 8.98 127.77 1.15 9.95 16 2 N -0.61 -30.60 2.90 -726.95 -2.11 -32.71 16 3 C -0.22 -12.10 9.21 84.03 0.77 -11.32 16 4 H 0.08 3.98 7.27 -2.91 -0.02 3.96 16 5 C -0.07 -3.73 5.10 84.86 0.43 -3.30 16 6 N -0.95 -56.96 10.71 21.65 0.23 -56.73 16 7 Si 0.96 45.05 29.57 68.60 2.03 47.08 16 8 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 C 0.15 5.87 6.07 86.38 0.52 6.40 16 12 C 0.05 1.85 6.28 71.98 0.45 2.31 16 13 O -0.38 -13.73 8.40 -148.98 -1.25 -14.98 16 14 C 0.05 1.54 6.28 71.98 0.45 1.99 16 15 C 0.12 3.40 5.81 86.38 0.50 3.90 16 16 N -0.60 -16.04 2.84 -846.76 -2.40 -18.45 16 17 C 0.08 1.99 10.08 127.77 1.29 3.28 16 18 C 0.52 13.56 6.80 87.65 0.60 14.16 16 19 O -0.57 -17.91 12.13 -3.05 -0.04 -17.95 16 20 C -0.14 -2.72 2.90 -10.79 -0.03 -2.75 16 21 H 0.12 2.10 6.94 -2.39 -0.02 2.08 16 22 C -0.11 -1.76 6.83 31.00 0.21 -1.55 16 23 C -0.09 -1.25 3.63 -11.71 -0.04 -1.29 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.10 -1.29 5.51 29.34 0.16 -1.13 16 26 C -0.11 -1.63 5.78 30.01 0.17 -1.46 16 27 C -0.12 -2.10 5.89 30.90 0.18 -1.91 16 28 C -0.08 -1.84 3.82 31.03 0.12 -1.72 16 29 C -0.08 -1.51 4.15 -10.48 -0.04 -1.55 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.01 0.29 7.34 -2.39 -0.02 0.27 16 32 H 0.01 0.61 7.34 -2.39 -0.02 0.59 16 33 H 0.03 1.18 8.03 -2.39 -0.02 1.17 16 34 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.07 2.48 8.07 -2.38 -0.02 2.46 16 36 H 0.05 1.98 8.04 -2.38 -0.02 1.96 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.10 2.56 7.42 -2.39 -0.02 2.54 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 2.02 6.80 -2.39 -0.02 2.01 16 45 H 0.09 1.72 6.21 -2.39 -0.01 1.71 16 46 H 0.07 1.35 7.43 -2.39 -0.02 1.33 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.05 0.79 7.94 -2.38 -0.02 0.77 16 51 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 54 H 0.05 1.21 7.63 -2.39 -0.02 1.19 16 55 H 0.06 1.57 5.29 -2.39 -0.01 1.55 16 Total: -1.00 -67.16 414.96 4.19 -62.97 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.83 Total: 16.76 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.90 Total: 14.01 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.28 Total: -107.89 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.29 Total: -32.93 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.16 4.19 -62.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479679306.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.338 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds