Wall clock time and date at job start Tue Mar 31 2020 22:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00058 * 2 1 4 4 H 1.08000 * 119.99938 * 174.46863 * 3 2 1 5 5 C 1.38812 * 119.99890 * 354.47633 * 3 2 1 6 6 N 1.31616 * 120.00479 * 5.07715 * 5 3 2 7 7 Si 1.86808 * 119.99811 * 185.07454 * 5 3 2 8 8 H 1.48499 * 109.46668 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.46836 * 119.99792 * 7 5 3 10 10 H 1.48499 * 109.46861 * 240.00152 * 7 5 3 11 11 C 1.46496 * 119.99558 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47268 * 275.27723 * 11 2 1 13 13 H 1.09000 * 109.70086 * 61.49086 * 12 11 2 14 14 C 1.53195 * 109.58866 * 301.13643 * 12 11 2 15 15 C 1.53039 * 109.34015 * 185.59160 * 14 12 11 16 16 C 1.53043 * 109.54030 * 61.31895 * 15 14 12 17 17 C 1.53198 * 109.33616 * 298.68466 * 16 15 14 18 18 N 1.46924 * 109.58923 * 181.84704 * 12 11 2 19 19 C 1.34777 * 120.62828 * 353.41920 * 18 12 11 20 20 O 1.21281 * 120.00147 * 354.35861 * 19 18 12 21 21 C 1.50709 * 120.00005 * 174.36262 * 19 18 12 22 22 C 1.53003 * 109.46954 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.46843 * 180.02562 * 22 21 19 24 24 C 1.53177 * 109.54125 * 294.55633 * 23 22 21 25 25 C 1.53092 * 109.16240 * 183.15427 * 24 23 22 26 26 O 1.42903 * 109.41660 * 57.60926 * 25 24 23 27 27 C 1.42911 * 114.09293 * 298.84141 * 26 25 24 28 28 C 1.53087 * 109.41253 * 61.15995 * 27 26 25 29 29 H 1.08998 * 109.47379 * 184.72686 * 1 2 3 30 30 H 1.09000 * 109.46923 * 304.72705 * 1 2 3 31 31 H 1.09005 * 109.47147 * 64.72480 * 1 2 3 32 32 H 0.96993 * 120.00530 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.46826 * 155.28257 * 11 2 1 34 34 H 1.09000 * 109.47263 * 35.28282 * 11 2 1 35 35 H 1.08997 * 109.49560 * 305.52607 * 14 12 11 36 36 H 1.09003 * 109.49878 * 65.62299 * 14 12 11 37 37 H 1.08993 * 109.43727 * 301.30964 * 15 14 12 38 38 H 1.09004 * 109.48550 * 181.35216 * 15 14 12 39 39 H 1.08990 * 109.50085 * 178.71450 * 16 15 14 40 40 H 1.09004 * 109.49739 * 58.64932 * 16 15 14 41 41 H 1.09000 * 109.58100 * 174.40765 * 17 16 15 42 42 H 1.08998 * 109.58133 * 294.68749 * 17 16 15 43 43 H 1.08999 * 109.46973 * 299.99706 * 21 19 18 44 44 H 1.08997 * 109.46945 * 59.99889 * 21 19 18 45 45 H 1.08999 * 109.47129 * 299.99719 * 22 21 19 46 46 H 1.09001 * 109.46842 * 60.00083 * 22 21 19 47 47 H 1.08998 * 109.54440 * 54.82324 * 23 22 21 48 48 H 1.08998 * 109.52413 * 303.05713 * 24 23 22 49 49 H 1.09002 * 109.52576 * 63.24997 * 24 23 22 50 50 H 1.08999 * 109.48320 * 297.62708 * 25 24 23 51 51 H 1.09002 * 109.48314 * 177.58910 * 25 24 23 52 52 H 1.08999 * 109.48386 * 301.17220 * 27 26 25 53 53 H 1.09008 * 109.48788 * 181.14494 * 27 26 25 54 54 H 1.09005 * 109.52089 * 182.48185 * 28 27 26 55 55 H 1.09000 * 109.52708 * 62.29555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2260 1.1881 0.0902 5 6 1.4605 2.3853 -0.1157 6 7 0.1444 2.3898 -0.1248 7 14 2.4010 3.9930 -0.2585 8 1 3.8599 3.7176 -0.2239 9 1 2.0535 4.6576 -1.5401 10 1 2.0374 4.8814 0.8746 11 6 2.1974 -1.2687 -0.0006 12 6 2.3375 -1.7774 1.4355 13 1 1.3496 -1.9561 1.8600 14 6 3.0783 -0.7354 2.2795 15 6 3.3385 -1.3060 3.6755 16 6 4.2195 -2.5524 3.5631 17 6 3.4916 -3.6149 2.7336 18 7 3.1099 -3.0272 1.4423 19 6 3.4620 -3.6231 0.2858 20 8 3.0558 -3.1857 -0.7700 21 6 4.3606 -4.8328 0.3045 22 6 4.6027 -5.3104 -1.1288 23 6 5.5144 -6.5390 -1.1097 24 6 6.8983 -6.1420 -0.5867 25 6 7.8257 -7.3586 -0.6453 26 8 7.8899 -7.8427 -1.9883 27 6 6.6327 -8.2730 -2.5141 28 6 5.6574 -7.0930 -2.5306 29 1 -0.3634 -1.0241 0.0847 30 1 -0.3633 0.5854 0.8446 31 1 -0.3634 0.4388 -0.9293 32 1 -0.3372 3.2279 -0.2053 33 1 3.1876 -1.1165 -0.4302 34 1 1.6525 -2.0026 -0.5945 35 1 4.0282 -0.4909 1.8041 36 1 2.4698 0.1652 2.3622 37 1 2.3897 -1.5728 4.1409 38 1 3.8443 -0.5577 4.2857 39 1 4.4232 -2.9450 4.5592 40 1 5.1589 -2.2911 3.0759 41 1 4.1533 -4.4649 2.5671 42 1 2.5992 -3.9453 3.2652 43 1 5.3126 -4.5712 0.7664 44 1 3.8856 -5.6294 0.8771 45 1 3.6506 -5.5722 -1.5903 46 1 5.0776 -4.5139 -1.7018 47 1 5.0837 -7.3027 -0.4622 48 1 7.3062 -5.3429 -1.2057 49 1 6.8133 -5.7981 0.4442 50 1 7.4385 -8.1426 0.0055 51 1 8.8238 -7.0712 -0.3145 52 1 6.2298 -9.0689 -1.8877 53 1 6.7711 -8.6444 -3.5295 54 1 4.6848 -7.4293 -2.8900 55 1 6.0402 -6.3131 -3.1889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479737436.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:16 Heat of formation + Delta-G solvation = -78.873993 kcal Electronic energy + Delta-G solvation = -31295.503391 eV Core-core repulsion = 27332.265472 eV Total energy + Delta-G solvation = -3963.237919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.54781 -40.29753 -38.53890 -37.35258 -36.34755 -34.01768 -33.70909 -32.24543 -31.88886 -31.30879 -28.09824 -28.02709 -26.85773 -25.44368 -24.44319 -24.08503 -23.05848 -22.00059 -21.51533 -20.85969 -19.79408 -18.79908 -17.83060 -17.20238 -16.95151 -16.90168 -16.65445 -16.48156 -15.76971 -15.54969 -15.37484 -15.28536 -15.22836 -14.91537 -14.88597 -14.57544 -14.31712 -14.17204 -13.90454 -13.62628 -13.23540 -13.14580 -13.02853 -12.95969 -12.79323 -12.73987 -12.60100 -12.22766 -12.16746 -12.10382 -12.08375 -11.97706 -11.86763 -11.71276 -11.68761 -11.51859 -11.34098 -11.20312 -11.11082 -10.66533 -10.39505 -10.11770 -9.44762 -8.88262 -7.72683 -5.16475 1.42357 1.44376 1.53949 1.75766 2.08998 2.51688 3.04630 3.33704 3.55737 3.73724 3.80624 3.82624 3.91597 4.00636 4.01552 4.10840 4.13355 4.20459 4.29321 4.30994 4.39719 4.43251 4.50868 4.54207 4.63936 4.65567 4.70915 4.72695 4.80103 4.83882 4.85475 4.89519 4.93207 4.97659 5.05429 5.06913 5.11675 5.16538 5.18576 5.22240 5.25108 5.31897 5.36272 5.38174 5.52397 5.53727 5.54004 5.58653 5.78995 5.82707 6.30896 6.34174 6.62424 7.18649 7.35602 7.92462 8.32218 9.25729 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.002642 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.199793 B =10594.102868 C =11310.617953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.628 5.628 3 C -0.234 4.234 4 H 0.070 0.930 5 C -0.066 4.066 6 N -0.948 5.948 7 Si 0.968 3.032 8 H -0.270 1.270 9 H -0.295 1.295 10 H -0.289 1.289 11 C 0.177 3.823 12 C 0.135 3.865 13 H 0.051 0.949 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.101 3.899 18 N -0.608 5.608 19 C 0.496 3.504 20 O -0.579 6.579 21 C -0.126 4.126 22 C -0.092 4.092 23 C -0.081 4.081 24 C -0.152 4.152 25 C 0.056 3.944 26 O -0.411 6.411 27 C 0.060 3.940 28 C -0.154 4.154 29 H 0.010 0.990 30 H 0.027 0.973 31 H 0.004 0.996 32 H 0.243 0.757 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.095 0.905 50 H 0.066 0.934 51 H 0.099 0.901 52 H 0.065 0.935 53 H 0.097 0.903 54 H 0.080 0.920 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.766 -24.726 7.976 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.353 5.353 3 C -0.364 4.364 4 H 0.087 0.913 5 C -0.258 4.258 6 N -0.599 5.599 7 Si 0.797 3.203 8 H -0.195 1.195 9 H -0.222 1.222 10 H -0.216 1.216 11 C 0.051 3.949 12 C 0.029 3.971 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.164 4.164 17 C -0.020 4.020 18 N -0.342 5.342 19 C 0.286 3.714 20 O -0.459 6.459 21 C -0.165 4.165 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.190 4.190 25 C -0.020 4.020 26 O -0.331 6.331 27 C -0.016 4.016 28 C -0.191 4.191 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.111 0.889 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.084 0.916 51 H 0.117 0.883 52 H 0.083 0.917 53 H 0.115 0.885 54 H 0.098 0.902 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.638 -24.392 7.303 28.884 hybrid contribution -0.428 1.817 -0.411 1.911 sum 13.210 -22.575 6.892 27.049 Atomic orbital electron populations 1.20635 0.82360 0.93253 0.99159 1.44563 1.02462 1.01960 1.86304 1.19545 0.91022 0.84754 1.41114 0.91250 1.25623 0.96606 1.00842 1.02778 1.70417 1.06121 1.24696 1.58657 0.85157 0.78152 0.80154 0.76813 1.19480 1.22193 1.21564 1.21236 0.95098 0.85488 0.93035 1.21844 0.93151 0.83538 0.98574 0.93101 1.21667 0.99058 0.97840 0.96135 1.21542 1.00501 0.98344 0.95092 1.21901 0.98154 0.94825 1.01563 1.22076 1.00765 0.96774 0.82381 1.48466 1.54356 1.24090 1.07269 1.21630 0.81091 0.85825 0.82860 1.90761 1.56282 1.66016 1.32804 1.21787 0.99929 0.94890 0.99939 1.21284 0.99481 0.97079 0.95219 1.21181 0.95076 0.96943 0.96774 1.22317 0.95121 0.98605 1.02930 1.22740 1.00974 0.95256 0.83008 1.87903 1.31472 1.83284 1.30394 1.22670 0.83641 0.95278 1.00051 1.22247 1.00592 0.98867 0.97431 0.97136 0.95491 0.97721 0.94702 0.95370 0.93034 0.94206 0.92994 0.91835 0.91489 0.87653 0.91968 0.86288 0.90370 0.86745 0.85983 0.92642 0.93848 0.88901 0.92824 0.88667 0.91566 0.88273 0.91692 0.88513 0.90158 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.51 8.99 127.77 1.15 11.66 16 2 N -0.63 -34.48 2.60 -726.94 -1.89 -36.37 16 3 C -0.23 -13.62 8.22 84.03 0.69 -12.93 16 4 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 5 C -0.07 -3.90 5.46 84.86 0.46 -3.44 16 6 N -0.95 -58.55 9.44 21.65 0.20 -58.35 16 7 Si 0.97 47.54 29.56 68.60 2.03 49.57 16 8 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 C 0.18 8.41 3.55 86.38 0.31 8.72 16 12 C 0.13 5.04 3.21 44.97 0.14 5.19 16 13 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -3.93 4.61 30.67 0.14 -3.79 16 15 C -0.12 -2.92 5.89 30.62 0.18 -2.74 16 16 C -0.13 -2.13 6.08 30.67 0.19 -1.95 16 17 C 0.10 1.67 6.35 86.36 0.55 2.22 16 18 N -0.61 -16.88 2.97 -795.02 -2.36 -19.24 16 19 C 0.50 14.41 7.53 87.66 0.66 15.07 16 20 O -0.58 -23.14 11.54 -3.03 -0.03 -23.17 16 21 C -0.13 -2.12 3.82 29.85 0.11 -2.01 16 22 C -0.09 -1.80 3.98 30.59 0.12 -1.68 16 23 C -0.08 -1.10 2.27 -10.68 -0.02 -1.13 16 24 C -0.15 -1.91 5.10 30.68 0.16 -1.76 16 25 C 0.06 0.68 6.84 72.01 0.49 1.18 16 26 O -0.41 -7.26 10.77 -148.98 -1.60 -8.86 16 27 C 0.06 0.81 6.84 72.01 0.49 1.30 16 28 C -0.15 -2.31 5.42 30.68 0.17 -2.14 16 29 H 0.01 0.50 7.90 -2.39 -0.02 0.48 16 30 H 0.03 1.57 6.92 -2.39 -0.02 1.55 16 31 H 0.00 0.26 7.16 -2.38 -0.02 0.24 16 32 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.03 1.44 7.09 -2.38 -0.02 1.42 16 34 H 0.05 2.60 6.17 -2.39 -0.01 2.58 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 2.31 6.97 -2.39 -0.02 2.29 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.12 1.06 5.93 -2.39 -0.01 1.04 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.11 1.42 6.44 -2.39 -0.02 1.40 16 44 H 0.12 1.27 7.71 -2.39 -0.02 1.25 16 45 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 46 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.09 0.80 6.75 -2.39 -0.02 0.78 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 54 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 55 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.63 405.87 3.16 -73.47 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.83 Total: 11.17 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.99 Total: 11.79 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.05 Total: -113.96 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.64 Total: -32.03 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -76.63 3.16 -73.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479737436.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.403 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds