Wall clock time and date at job start Tue Mar 31 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00070 * 2 1 4 4 C 1.52996 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47290 * 50.87651 * 4 3 2 6 6 O 1.21286 * 120.00046 * 107.20982 * 5 4 3 7 7 N 1.34775 * 120.00129 * 287.22128 * 5 4 3 8 8 C 1.46922 * 120.62855 * 7.63971 * 7 5 4 9 9 C 1.53620 * 108.54231 * 126.37584 * 8 7 5 10 10 C 1.53043 * 109.24467 * 54.85618 * 9 8 7 11 11 C 1.53050 * 109.53633 * 298.51109 * 10 9 8 12 12 C 1.46927 * 120.63317 * 187.92779 * 7 5 4 13 13 H 1.09004 * 109.59130 * 113.79066 * 12 7 5 14 14 C 1.53008 * 109.58320 * 353.36617 * 12 7 5 15 15 N 1.46498 * 109.47108 * 71.63512 * 14 12 7 16 16 C 1.36937 * 120.00141 * 184.80244 * 15 14 12 17 17 H 1.08004 * 119.99571 * 4.81863 * 16 15 14 18 18 C 1.38808 * 120.00313 * 184.81022 * 16 15 14 19 19 N 1.31617 * 120.00444 * 184.80145 * 18 16 15 20 20 Si 1.86801 * 119.99820 * 4.80015 * 18 16 15 21 21 H 1.48507 * 109.47178 * 94.78985 * 20 18 16 22 22 H 1.48505 * 109.47363 * 214.78690 * 20 18 16 23 23 H 1.48494 * 109.47225 * 334.79087 * 20 18 16 24 24 C 1.53004 * 109.47300 * 170.87694 * 4 3 2 25 25 C 1.53003 * 109.46844 * 180.02562 * 24 4 3 26 26 C 1.52999 * 109.47312 * 299.99795 * 25 24 4 27 27 C 1.53004 * 109.46999 * 60.00299 * 26 25 24 28 28 C 1.52999 * 109.47160 * 290.87676 * 4 3 2 29 29 H 1.09005 * 109.47135 * 300.00540 * 1 2 3 30 30 H 1.08999 * 109.46743 * 60.00401 * 1 2 3 31 31 H 1.08999 * 109.47350 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47286 * 59.99674 * 3 2 1 33 33 H 1.09006 * 109.46860 * 299.99733 * 3 2 1 34 34 H 1.09000 * 109.58715 * 246.20357 * 8 7 5 35 35 H 1.08996 * 109.59065 * 6.63420 * 8 7 5 36 36 H 1.09001 * 109.63629 * 294.86689 * 9 8 7 37 37 H 1.09000 * 109.45951 * 174.73918 * 9 8 7 38 38 H 1.09004 * 109.46256 * 178.49111 * 10 9 8 39 39 H 1.08995 * 109.45104 * 58.52554 * 10 9 8 40 40 H 1.08996 * 109.49657 * 301.41479 * 11 10 9 41 41 H 1.08999 * 109.52263 * 181.33181 * 11 10 9 42 42 H 1.08998 * 109.46770 * 191.63106 * 14 12 7 43 43 H 1.08997 * 109.47466 * 311.63225 * 14 12 7 44 44 H 0.97003 * 120.00019 * 4.80424 * 15 14 12 45 45 H 0.96997 * 120.00275 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.47062 * 299.99935 * 24 4 3 47 47 H 1.09001 * 109.46956 * 60.00018 * 24 4 3 48 48 H 1.09000 * 109.47115 * 60.00664 * 25 24 4 49 49 H 1.09000 * 109.46727 * 180.02562 * 25 24 4 50 50 H 1.09001 * 109.47215 * 300.00521 * 26 25 24 51 51 H 1.08997 * 109.46860 * 180.02562 * 26 25 24 52 52 H 1.08993 * 109.46664 * 179.97438 * 27 26 25 53 53 H 1.09001 * 109.46956 * 60.00063 * 27 26 25 54 54 H 1.09001 * 109.47215 * 300.00056 * 28 4 3 55 55 H 1.09000 * 109.46993 * 59.99981 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9659 0.2511 -1.1012 6 8 4.4980 0.6933 -2.0974 7 7 3.7594 -1.0752 -0.9799 8 6 2.9700 -1.6107 0.1376 9 6 1.8532 -2.4973 -0.4338 10 6 2.4709 -3.5678 -1.3363 11 6 3.1972 -2.8960 -2.5040 12 6 4.3246 -2.0136 -1.9591 13 1 5.0760 -2.6378 -1.4755 14 6 4.9650 -1.2319 -3.1080 15 7 6.1974 -0.5946 -2.6378 16 6 6.8949 0.2425 -3.4672 17 1 6.4969 0.4943 -4.4391 18 6 8.1133 0.7674 -3.0588 19 7 8.7383 1.6451 -3.8146 20 14 8.8658 0.2281 -1.4364 21 1 9.8226 -0.8815 -1.6790 22 1 9.5820 1.3727 -0.8181 23 1 7.7914 -0.2357 -0.5223 24 6 4.1564 2.5642 -0.2281 25 6 5.6817 2.4432 -0.2280 26 6 6.1494 1.8904 1.1198 27 6 5.5284 0.5109 1.3485 28 6 4.0027 0.6322 1.3487 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.6132 -2.2028 0.7886 35 1 2.5322 -0.7881 0.7030 36 1 1.1618 -1.8867 -1.0146 37 1 1.3159 -2.9770 0.3843 38 1 1.6839 -4.2156 -1.7225 39 1 3.1807 -4.1622 -0.7609 40 1 2.4932 -2.2816 -3.0652 41 1 3.6169 -3.6592 -3.1594 42 1 5.1978 -1.9138 -3.9259 43 1 4.2715 -0.4675 -3.4584 44 1 6.5194 -0.7656 -1.7388 45 1 9.5899 2.0116 -3.5294 46 1 3.8236 2.9577 -1.1884 47 1 3.8451 3.2394 0.5689 48 1 5.9926 1.7681 -1.0254 49 1 6.1240 3.4260 -0.3905 50 1 5.8384 2.5656 1.9170 51 1 7.2360 1.8047 1.1199 52 1 5.8621 0.1170 2.3084 53 1 5.8394 -0.1642 0.5512 54 1 3.6914 1.3074 2.1457 55 1 3.5603 -0.3506 1.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480350213.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:39 Heat of formation + Delta-G solvation = -20.745987 kcal Electronic energy + Delta-G solvation = -35084.169916 eV Core-core repulsion = 31123.452617 eV Total energy + Delta-G solvation = -3960.717299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.36912 -39.42438 -38.75129 -37.41243 -36.31010 -34.07968 -33.66056 -32.71410 -31.92363 -31.28561 -28.00793 -27.84354 -26.30032 -25.59278 -24.24549 -23.93109 -23.39037 -22.42701 -21.62910 -20.99651 -19.80841 -18.88364 -17.82725 -17.36966 -17.05697 -16.68661 -16.55742 -16.31036 -15.98856 -15.80627 -15.59117 -15.05643 -15.01783 -14.85038 -14.74189 -14.41816 -14.09934 -13.84178 -13.70320 -13.63184 -13.42840 -13.27601 -13.12663 -12.92385 -12.80222 -12.68485 -12.62780 -12.42548 -12.33102 -12.08332 -11.91246 -11.81477 -11.74479 -11.57225 -11.40172 -11.29412 -11.19980 -10.99754 -10.90150 -10.67731 -10.14258 -9.48957 -9.29039 -8.83173 -7.91814 -5.14588 1.27640 1.32270 1.39007 2.13418 2.33891 2.51588 2.76869 3.39112 3.59462 3.67734 3.75298 3.81747 3.90795 4.09503 4.16002 4.21171 4.26780 4.29473 4.39881 4.42324 4.46397 4.49349 4.51306 4.60128 4.62285 4.64157 4.70593 4.71566 4.74584 4.77820 4.90868 4.94879 4.99834 5.02206 5.03880 5.09857 5.11723 5.22756 5.24315 5.25948 5.29057 5.33245 5.39603 5.40401 5.44663 5.57204 5.71404 5.75022 5.85424 6.05107 6.26868 6.30515 6.91388 7.20345 7.79291 7.99061 8.20083 9.32425 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.006310 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.271540 B = 4436.387283 C = 5561.501063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.364 6.364 3 C 0.067 3.933 4 C -0.072 4.072 5 C 0.501 3.499 6 O -0.518 6.518 7 N -0.601 5.601 8 C 0.077 3.923 9 C -0.120 4.120 10 C -0.115 4.115 11 C -0.117 4.117 12 C 0.143 3.857 13 H 0.057 0.943 14 C 0.163 3.837 15 N -0.723 5.723 16 C -0.173 4.173 17 H 0.038 0.962 18 C -0.070 4.070 19 N -0.995 5.995 20 Si 0.945 3.055 21 H -0.292 1.292 22 H -0.301 1.301 23 H -0.252 1.252 24 C -0.078 4.078 25 C -0.139 4.139 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.169 0.831 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.003 0.997 43 H 0.038 0.962 44 H 0.357 0.643 45 H 0.249 0.751 46 H 0.044 0.956 47 H 0.096 0.904 48 H 0.055 0.945 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.030 0.970 52 H 0.082 0.918 53 H 0.028 0.972 54 H 0.099 0.901 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 -7.437 18.407 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.284 6.284 3 C -0.010 4.010 4 C -0.075 4.075 5 C 0.288 3.712 6 O -0.392 6.392 7 N -0.336 5.336 8 C -0.042 4.042 9 C -0.158 4.158 10 C -0.153 4.153 11 C -0.155 4.155 12 C 0.039 3.961 13 H 0.075 0.925 14 C 0.037 3.963 15 N -0.367 5.367 16 C -0.305 4.305 17 H 0.056 0.944 18 C -0.260 4.260 19 N -0.650 5.650 20 Si 0.776 3.224 21 H -0.220 1.220 22 H -0.228 1.228 23 H -0.177 1.177 24 C -0.116 4.116 25 C -0.177 4.177 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.184 0.816 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.190 0.810 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.049 0.951 52 H 0.101 0.899 53 H 0.047 0.953 54 H 0.118 0.882 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.999 -7.276 17.669 29.139 hybrid contribution 1.388 0.455 -0.240 1.480 sum -20.612 -6.821 17.429 27.841 Atomic orbital electron populations 1.23068 0.81502 1.03859 1.00566 1.88516 1.20169 1.25186 1.94526 1.22505 0.89951 0.86486 1.02033 1.20922 0.95586 0.95366 0.95648 1.20782 0.78842 0.83186 0.88405 1.91020 1.40678 1.76482 1.31055 1.47856 1.53369 1.04808 1.27612 1.23304 0.91882 1.00573 0.88483 1.22038 0.97710 0.96358 0.99656 1.21544 0.99769 0.97963 0.96015 1.21798 0.96680 0.98186 0.98884 1.21314 0.94974 0.90502 0.89279 0.92458 1.20963 0.87906 0.93113 0.94297 1.42480 1.26190 1.54692 1.13311 1.18793 0.98051 1.16758 0.96854 0.94372 1.25185 0.98691 1.00738 1.01344 1.69893 1.18173 1.36031 1.40864 0.85547 0.78438 0.76660 0.81775 1.21986 1.22846 1.17702 1.21167 0.94113 0.94684 1.01621 1.21676 0.96820 1.00561 0.98653 1.21523 0.98602 0.97856 0.97213 1.21574 0.96770 0.96252 1.01287 1.22240 0.94611 1.04326 0.94513 0.92239 0.94863 0.88134 0.88854 0.93992 0.93285 0.81586 0.91157 0.89215 0.90497 0.91938 0.92608 0.90939 0.97963 0.94405 0.80987 0.94168 0.93739 0.88520 0.92607 0.94016 0.89275 0.95070 0.89926 0.95298 0.88241 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.14 113.37 1.15 1.20 16 2 O -0.36 -5.87 3.71 -148.98 -0.55 -6.42 16 3 C 0.07 1.24 4.83 71.98 0.35 1.59 16 4 C -0.07 -1.86 0.50 -52.93 -0.03 -1.89 16 5 C 0.50 17.51 4.22 87.66 0.37 17.88 16 6 O -0.52 -24.40 7.95 -3.05 -0.02 -24.42 16 7 N -0.60 -17.86 2.90 -794.20 -2.30 -20.16 16 8 C 0.08 1.54 3.53 86.51 0.31 1.84 16 9 C -0.12 -1.90 4.99 30.82 0.15 -1.75 16 10 C -0.12 -2.07 5.88 30.63 0.18 -1.89 16 11 C -0.12 -2.95 5.35 30.67 0.16 -2.78 16 12 C 0.14 4.75 2.91 44.98 0.13 4.88 16 13 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 14 C 0.16 7.32 4.88 86.38 0.42 7.74 16 15 N -0.72 -38.10 3.26 -343.45 -1.12 -39.22 16 16 C -0.17 -10.98 9.77 84.03 0.82 -10.16 16 17 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 18 C -0.07 -4.57 5.50 84.86 0.47 -4.10 16 19 N -1.00 -69.66 13.97 21.65 0.30 -69.36 16 20 Si 0.95 51.04 27.95 68.60 1.92 52.96 16 21 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 22 H -0.30 -16.41 7.11 99.48 0.71 -15.70 16 23 H -0.25 -12.38 5.50 99.48 0.55 -11.84 16 24 C -0.08 -2.34 4.34 30.60 0.13 -2.21 16 25 C -0.14 -5.36 5.64 30.59 0.17 -5.19 16 26 C -0.11 -3.60 5.92 30.60 0.18 -3.41 16 27 C -0.12 -3.37 5.70 30.61 0.17 -3.19 16 28 C -0.12 -2.47 4.25 30.61 0.13 -2.34 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.77 7.15 -2.39 -0.02 0.75 16 32 H 0.09 1.13 8.12 -2.38 -0.02 1.11 16 33 H 0.04 0.92 8.12 -2.38 -0.02 0.90 16 34 H 0.05 0.95 7.98 -2.39 -0.02 0.93 16 35 H 0.17 2.88 1.88 -98.63 -0.18 2.69 16 36 H 0.07 1.21 5.55 -2.39 -0.01 1.20 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.00 0.12 8.11 -2.39 -0.02 0.11 16 43 H 0.04 1.91 6.06 -2.79 -0.02 1.89 16 44 H 0.36 18.41 5.35 -92.71 -0.50 17.91 16 45 H 0.25 16.72 8.31 -92.71 -0.77 15.95 16 46 H 0.04 1.55 7.96 -2.39 -0.02 1.53 16 47 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.06 2.78 5.92 -2.39 -0.01 2.76 16 49 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.03 1.03 6.57 -2.39 -0.02 1.01 16 54 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 55 H 0.11 1.88 3.94 -2.39 -0.01 1.87 16 Total: -1.00 -83.77 380.86 3.53 -80.24 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.03 Total: 30.16 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.28 Total: -3.77 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -3.12 Total: -128.74 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.58 Total: -30.84 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.92 Total: 52.96 kcal Total: -83.77 3.53 -80.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480350213.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.495 kcal (2) G-P(sol) polarization free energy of solvation -83.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds