Wall clock time and date at job start Tue Mar 31 2020 22:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00225 * 2 1 4 4 C 1.53001 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46939 * 28.72643 * 4 3 2 6 6 O 1.21276 * 120.00152 * 115.28226 * 5 4 3 7 7 N 1.34778 * 119.99943 * 295.27487 * 5 4 3 8 8 C 1.46928 * 120.62863 * 6.83458 * 7 5 4 9 9 C 1.52759 * 109.00798 * 233.58145 * 8 7 5 10 10 C 1.53040 * 109.38283 * 305.58839 * 9 8 7 11 11 C 1.53039 * 109.53970 * 61.23965 * 10 9 8 12 12 C 1.46927 * 120.63178 * 187.10941 * 7 5 4 13 13 H 1.09005 * 109.58397 * 246.15851 * 12 7 5 14 14 C 1.52995 * 109.58552 * 6.58517 * 12 7 5 15 15 N 1.46503 * 109.47123 * 286.03446 * 14 12 7 16 16 C 1.36934 * 120.00097 * 185.57440 * 15 14 12 17 17 H 1.08006 * 120.00188 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99970 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47501 * 59.99976 * 20 18 16 22 22 H 1.48501 * 109.47018 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46814 * 299.99678 * 20 18 16 24 24 C 1.53001 * 109.47178 * 268.72358 * 4 3 2 25 25 C 1.53001 * 109.46944 * 180.02562 * 24 4 3 26 26 C 1.52999 * 109.47518 * 59.99635 * 25 24 4 27 27 C 1.53001 * 109.47218 * 300.00525 * 26 25 24 28 28 C 1.52988 * 109.47153 * 59.99462 * 27 26 25 29 29 H 1.08996 * 109.47514 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46905 * 59.99245 * 1 2 3 31 31 H 1.09007 * 109.46841 * 300.00115 * 1 2 3 32 32 H 1.08998 * 109.47138 * 300.00226 * 3 2 1 33 33 H 1.09001 * 109.47070 * 59.99947 * 3 2 1 34 34 H 1.09001 * 109.58801 * 353.41456 * 8 7 5 35 35 H 1.08997 * 109.58538 * 113.84143 * 8 7 5 36 36 H 1.08999 * 109.56826 * 185.55097 * 9 8 7 37 37 H 1.09000 * 109.36344 * 65.49639 * 9 8 7 38 38 H 1.09002 * 109.46457 * 301.21851 * 10 9 8 39 39 H 1.08998 * 109.46410 * 181.26138 * 10 9 8 40 40 H 1.08998 * 109.50398 * 178.68327 * 11 10 9 41 41 H 1.08999 * 109.50073 * 58.58435 * 11 10 9 42 42 H 1.09003 * 109.47333 * 46.03149 * 14 12 7 43 43 H 1.09001 * 109.47151 * 166.03672 * 14 12 7 44 44 H 0.97000 * 120.00016 * 5.57319 * 15 14 12 45 45 H 0.96994 * 119.99607 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.47033 * 299.99879 * 24 4 3 47 47 H 1.08996 * 109.47004 * 60.00207 * 24 4 3 48 48 H 1.09003 * 109.46904 * 299.99648 * 25 24 4 49 49 H 1.09003 * 109.47179 * 180.02562 * 25 24 4 50 50 H 1.09002 * 109.47020 * 180.02562 * 26 25 24 51 51 H 1.08999 * 109.46563 * 60.00279 * 26 25 24 52 52 H 1.09003 * 109.46765 * 299.99719 * 27 26 25 53 53 H 1.08998 * 109.46862 * 180.02562 * 27 26 25 54 54 H 1.09003 * 109.47027 * 179.97438 * 28 27 26 55 55 H 1.08996 * 109.47427 * 60.00636 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9380 -0.0974 -0.6818 6 8 4.5683 -0.0611 -1.7173 7 7 3.5977 -1.2843 -0.1414 8 6 2.7100 -1.3474 1.0277 9 6 3.3875 -2.1686 2.1232 10 6 3.7853 -3.5353 1.5609 11 6 4.7785 -3.3467 0.4120 12 6 4.1122 -2.5392 -0.7064 13 1 3.2887 -3.1134 -1.1310 14 6 5.1397 -2.2277 -1.7963 15 7 4.4495 -1.7424 -2.9939 16 6 5.1557 -1.5070 -4.1432 17 1 6.2217 -1.6796 -4.1669 18 6 4.5016 -1.0476 -5.2780 19 7 3.2024 -0.8388 -5.2496 20 14 5.4650 -0.7272 -6.8461 21 1 6.1171 -1.9846 -7.2921 22 1 4.5417 -0.2454 -7.9046 23 1 6.5022 0.3037 -6.5878 24 6 4.0459 1.1765 1.4430 25 6 5.5712 1.0562 1.4436 26 6 6.1769 2.2451 0.6948 27 6 5.6664 2.2531 -0.7475 28 6 4.1412 2.3734 -0.7480 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 2.5171 -0.3394 1.3949 35 1 1.7699 -1.8225 0.7473 36 1 2.6983 -2.3046 2.9566 37 1 4.2784 -1.6443 2.4691 38 1 2.8972 -4.0489 1.1926 39 1 4.2487 -4.1307 2.3475 40 1 5.0793 -4.3213 0.0274 41 1 5.6562 -2.8113 0.7739 42 1 5.8283 -1.4621 -1.4385 43 1 5.6969 -3.1324 -2.0396 44 1 3.4921 -1.5877 -2.9727 45 1 2.7453 -0.5181 -6.0428 46 1 3.7547 2.1037 1.9366 47 1 3.6141 0.3297 1.9765 48 1 5.8627 0.1291 0.9499 49 1 5.9348 1.0500 2.4711 50 1 7.2635 2.1591 0.6949 51 1 5.8853 3.1720 1.1886 52 1 5.9579 1.3260 -1.2412 53 1 6.0983 3.0998 -1.2810 54 1 3.7776 2.3796 -1.7756 55 1 3.8497 3.3004 -0.2544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480350214.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:43 Heat of formation + Delta-G solvation = -29.540909 kcal Electronic energy + Delta-G solvation = -34630.058166 eV Core-core repulsion = 30668.959490 eV Total energy + Delta-G solvation = -3961.098676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.28422 -39.36817 -38.62434 -37.47013 -36.08971 -34.00458 -33.50285 -32.61503 -31.70561 -31.16365 -27.98321 -27.66163 -26.07027 -25.66441 -24.31650 -24.11762 -23.46350 -22.19091 -21.72984 -20.82830 -19.52599 -18.67058 -17.66595 -17.34996 -17.01373 -16.62689 -16.43985 -16.31974 -16.00763 -15.43728 -15.26885 -15.17322 -15.02152 -14.69162 -14.59438 -14.23655 -14.20317 -13.99497 -13.70267 -13.58686 -13.41283 -13.04394 -12.96684 -12.79147 -12.76617 -12.68877 -12.57675 -12.47920 -12.22838 -12.04453 -11.92882 -11.86078 -11.71924 -11.54094 -11.39669 -11.38126 -11.23510 -11.01440 -10.79285 -10.73056 -10.23061 -9.50885 -9.05877 -8.54761 -7.80247 -4.97398 1.39893 1.45060 1.50168 2.25241 2.42646 2.62173 2.81062 3.51079 3.68241 3.74255 3.83387 3.93444 3.96415 4.09244 4.20118 4.26787 4.28171 4.33219 4.42396 4.46926 4.49987 4.51504 4.54343 4.60489 4.62532 4.66710 4.71747 4.74034 4.76987 4.82842 4.91789 4.94442 4.96969 5.04276 5.07153 5.09095 5.14683 5.19263 5.22056 5.29329 5.30794 5.35930 5.36618 5.37959 5.47590 5.49458 5.52502 5.64880 5.71684 6.13221 6.23857 6.39824 7.01644 7.46335 7.91932 8.30404 8.53542 9.44444 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.005382 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.379646 B = 5201.116909 C = 5739.147731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.383 6.383 3 C 0.061 3.939 4 C -0.071 4.071 5 C 0.496 3.504 6 O -0.510 6.510 7 N -0.594 5.594 8 C 0.122 3.878 9 C -0.141 4.141 10 C -0.110 4.110 11 C -0.117 4.117 12 C 0.148 3.852 13 H 0.043 0.957 14 C 0.171 3.829 15 N -0.696 5.696 16 C -0.204 4.204 17 H 0.057 0.943 18 C -0.086 4.086 19 N -0.973 5.973 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.290 1.290 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.109 4.109 27 C -0.129 4.129 28 C -0.084 4.084 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.005 0.995 44 H 0.367 0.633 45 H 0.242 0.758 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.032 0.968 49 H 0.088 0.912 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.046 0.954 53 H 0.051 0.949 54 H 0.025 0.975 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 3.328 25.303 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.075 4.075 5 C 0.283 3.717 6 O -0.384 6.384 7 N -0.329 5.329 8 C 0.001 3.999 9 C -0.179 4.179 10 C -0.148 4.148 11 C -0.156 4.156 12 C 0.043 3.957 13 H 0.061 0.939 14 C 0.044 3.956 15 N -0.336 5.336 16 C -0.338 4.338 17 H 0.075 0.925 18 C -0.277 4.277 19 N -0.627 5.627 20 Si 0.794 3.206 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.217 1.217 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.146 4.146 27 C -0.166 4.166 28 C -0.122 4.122 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.023 0.977 44 H 0.198 0.802 45 H 0.050 0.950 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.051 0.949 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.101 0.899 52 H 0.065 0.935 53 H 0.069 0.931 54 H 0.044 0.956 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.956 3.184 24.629 25.009 hybrid contribution -0.073 0.437 -2.151 2.196 sum -3.028 3.621 22.478 22.969 Atomic orbital electron populations 1.22833 0.81260 1.03255 1.00497 1.88679 1.20352 1.26231 1.95017 1.22665 0.91226 0.86118 1.01555 1.20947 0.94768 0.93453 0.98308 1.20695 0.80857 0.85530 0.84631 1.91144 1.39280 1.86174 1.21782 1.47757 1.49138 1.03880 1.32155 1.22186 0.90931 1.02662 0.84117 1.22122 1.01568 0.95768 0.98425 1.21456 0.98497 0.97869 0.96959 1.21828 0.98873 0.99355 0.95505 1.21196 0.95125 0.85957 0.93385 0.93853 1.20784 0.94205 0.93813 0.86800 1.42214 1.06641 1.77511 1.07270 1.19423 0.91652 1.32918 0.89767 0.92495 1.25309 0.96701 1.04761 1.00933 1.69842 1.08529 1.55711 1.28587 0.85324 0.77238 0.77829 0.80161 1.20511 1.22159 1.21676 1.22079 0.95841 1.05010 0.92084 1.21490 0.95500 0.97397 1.00831 1.21491 0.99598 0.99381 0.94142 1.21623 0.95416 1.01498 0.98092 1.21249 0.95790 0.96805 0.98356 0.89365 0.95718 0.91076 0.94970 0.88512 0.85941 0.92538 0.88588 0.91584 0.92182 0.90052 0.90963 0.92003 0.96759 0.97747 0.80175 0.94976 0.88396 0.88358 0.94947 0.89323 0.92582 0.89913 0.93492 0.93066 0.95581 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.75 113.37 1.22 1.57 16 2 O -0.38 -10.00 4.21 -148.98 -0.63 -10.63 16 3 C 0.06 1.50 4.96 71.98 0.36 1.86 16 4 C -0.07 -2.01 0.50 -52.93 -0.03 -2.03 16 5 C 0.50 18.89 4.15 87.66 0.36 19.25 16 6 O -0.51 -25.75 7.63 -3.02 -0.02 -25.77 16 7 N -0.59 -19.50 2.73 -795.85 -2.17 -21.67 16 8 C 0.12 2.80 3.21 86.22 0.28 3.07 16 9 C -0.14 -2.41 5.70 30.53 0.17 -2.23 16 10 C -0.11 -2.14 5.89 30.62 0.18 -1.96 16 11 C -0.12 -3.12 5.33 30.67 0.16 -2.96 16 12 C 0.15 5.40 2.91 44.97 0.13 5.53 16 13 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 14 C 0.17 8.09 4.90 86.38 0.42 8.51 16 15 N -0.70 -40.58 3.20 -343.45 -1.10 -41.68 16 16 C -0.20 -13.03 9.76 84.03 0.82 -12.21 16 17 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 18 C -0.09 -5.57 5.50 84.86 0.47 -5.11 16 19 N -0.97 -66.05 13.06 21.65 0.28 -65.77 16 20 Si 0.96 51.94 29.55 68.60 2.03 53.96 16 21 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 23 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 24 C -0.11 -2.18 4.21 30.60 0.13 -2.06 16 25 C -0.11 -2.50 5.70 30.59 0.17 -2.32 16 26 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 27 C -0.13 -4.21 5.63 30.59 0.17 -4.04 16 28 C -0.08 -2.62 4.18 30.59 0.13 -2.49 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.03 0.94 7.80 -2.39 -0.02 0.92 16 33 H 0.10 1.54 7.80 -2.39 -0.02 1.52 16 34 H 0.12 2.43 2.62 -2.89 -0.01 2.43 16 35 H 0.06 1.38 6.94 -2.39 -0.02 1.36 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.12 7.64 -2.39 -0.02 1.10 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.01 0.75 6.36 -2.39 -0.02 0.74 16 43 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 44 H 0.37 23.17 7.24 -92.71 -0.67 22.50 16 45 H 0.24 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.10 1.32 8.11 -2.39 -0.02 1.30 16 47 H 0.10 1.66 3.79 -2.39 -0.01 1.65 16 48 H 0.03 0.92 7.22 -2.39 -0.02 0.91 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.05 2.02 5.69 -2.39 -0.01 2.01 16 53 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 55 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -82.62 388.34 3.91 -78.71 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.19 Total: 32.85 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.33 Total: 0.01 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -2.99 Total: -129.13 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.65 Total: -36.40 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.03 Total: 53.96 kcal Total: -82.62 3.91 -78.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480350214.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.165 kcal (2) G-P(sol) polarization free energy of solvation -82.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds